mRNA_E_fasciculatus_S2_contig8691.16800.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8691.16800.1
Unique NamemRNA_E_fasciculatus_S2_contig8691.16800.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8691.16800.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJP4_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 7.770e-57
Identity = 175/307 (57.00%), Postives = 194/307 (63.19%), Query Frame = 1 
Query:    1 RSSPRADRVGGQKKRRGAGAATPASTVFGPTA---PASGKPPIAPPPMRRPQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVXXXXXXXXXXXXXXXXXXMPPTAASLXAAVAVMPAAVPSG-RLSYGSLAVAVNAAVAXXXXXXXXPP------PTPPGQLFGAPTSLPFLFQSQALARDEMDVDPSKSERVSTAKAMMANALASVAQVKLNLAGR-AVTKAEEEARVLQSVIADADLARAVAAMEELREAEWAANRMDVDDEDDFEGPWPMEVDG 888
            R SPRADRVGGQKKRRGAGA TPASTV GPT    PAS KPPIAPPP+RRP H                                     XXXXXXXXXXXX       A          XXXXXXXX  MPP A S  A             + S GS+A A  AA  XXXXXXXX        P PPGQLFGA +S    FQ+Q LARD+MDVDPSK ER+STA A+MA ALASV Q KL+LAGR +++KAEEEA + QSVIADADLARA AAMEELREAEWA+N+MDVDD++++EGPWPMEVDG
Sbjct:   42 RCSPRADRVGGQKKRRGAGAGTPASTVVGPTTMPVPASTKPPIAPPPVRRPLHARKSAFIGFPAHPSPVTTAGPAVRLSILSSPSMPRVGXXXXXXXXXXXXTA-----ASRSTVGPAAVXXXXXXXXAVMPPAAPSFQAXXXXXXXXXXXXXQPSQGSMAAARYAAAVXXXXXXXXXXXXXMSSPAPPGQLFGAASSWSSAFQTQQLARDDMDVDPSKLERISTATAVMARALASVLQAKLSLAGRPSMSKAEEEALLWQSVIADADLARAQAAMEELREAEWASNQMDVDDDEEYEGPWPMEVDG 343
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BLAST of mRNA_E_fasciculatus_S2_contig8691.16800.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB7_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 9.600e-46
Identity = 95/156 (60.90%), Postives = 116/156 (74.36%), Query Frame = 1 
Query:  424 MPAAVPSGRLSYGSLAVAVNAAVAXXXXXXXXPPPTPPGQLFGAPTSLPFLFQSQALARDEMDVDPSKSERVSTAKAMMANALASVAQVKLNLAGRA-VTKAEEEARVLQSVIADADLARAVAAMEELREAEWAANRMDVDDEDDFEGPWPMEVDG 888
            MP+AVPSG+ SYGS+A A   A A          P PPGQL GA +S   +FQ+Q LARD+MDVDPSK ER+  A AM+ +ALASV Q KL+LA R  +TK EE A +LQSVI DADLA A AAM+ELR AEWA+N+M+VDD++++EGPWPMEVDG
Sbjct:    1 MPSAVPSGQSSYGSMA-ATRYAAAAVSNAAAMSAPAPPGQLLGAASSWSSVFQTQHLARDDMDVDPSKRERMCRATAMIPSALASVVQAKLSLASRPFLTKVEEAALLLQSVIGDADLASAQAAMKELRAAEWASNQMEVDDDEEYEGPWPMEVDG 155
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8691.16800.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized7.770e-5757.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.600e-4660.90protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8691contigE_fasciculatus_S2_contig8691:1558..3069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size891
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_002820.1
Cds size891
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842525.6925025-CDS-E_fasciculatus_S2_contig8691:1557..16351696842525.6925025-CDS-E_fasciculatus_S2_contig8691:1557..1635Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8691 1558..1635 +
1696842525.707578-CDS-E_fasciculatus_S2_contig8691:2256..30691696842525.707578-CDS-E_fasciculatus_S2_contig8691:2256..3069Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8691 2257..3069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8691.16800.1prot_E_fasciculatus_S2_contig8691.16800.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8691 1558..3069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8691.16800.1

>prot_E_fasciculatus_S2_contig8691.16800.1 ID=prot_E_fasciculatus_S2_contig8691.16800.1|Name=mRNA_E_fasciculatus_S2_contig8691.16800.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=297bp
RSSPRADRVGGQKKRRGAGAATPASTVFGPTAPASGKPPIAPPPMRRPQH
ARKPAFGGFPATPSPATTAGPTTRPSVLNSPSVRRAGGARGAAAAGASAS
TSAVGPAVVVAATGATGATGVTGVTAVMPPTAASLPAAVAVMPAAVPSGR
LSYGSLAVAVNAAVAAAAATAVRPPPTPPGQLFGAPTSLPFLFQSQALAR
DEMDVDPSKSERVSTAKAMMANALASVAQVKLNLAGRAVTKAEEEARVLQ
SVIADADLARAVAAMEELREAEWAANRMDVDDEDDFEGPWPMEVDG*
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mRNA from alignment at E_fasciculatus_S2_contig8691:1558..3069+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8691.16800.1 ID=mRNA_E_fasciculatus_S2_contig8691.16800.1|Name=mRNA_E_fasciculatus_S2_contig8691.16800.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1512bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8691:1558..3069+ (Ectocarpus fasciculatus EfasUO2)
AGGTCTTCACCTCGCGCGGACAGGGTCGGCGGTCAGAAGAAGAGGAGGGG
CGCCGGTGCCGCAACTCCTGCTAGCACGGTACGACCGACGGTATTGTGTC
GATACCACGACAGTACATTGTCTGGTTTCCTCTCCTTGACATGTTTCGAT
CAATATTGTGGCTTGGTGTCTACGTATTCTATCCTCCAGAAAGCTGACCA
AGCTGAGAGAAGCGCTTGCTTCAGACTGAGCAGTACCCGTGAGATATGCC
ACCCTCCCGCCTATAGCTGCTGCACGTTTCGTAACAGGAACTGAATACAT
CCAAAAGCTTCTTTTCGTAGATTACGCCATCTGTCTGCTTAGTCTGAAAG
CAGACAGCAAGCAGTAGCGGCCCTTTCTTGTGTCCTTGGGGCGGGAACCA
GACGTACGGAGGCCGCTGCTGCGTGCTTTTCACCAAACAATTTGTAAACA
AGATGCCATATCGCTCGGTTCCATGCCTCTCTTCGAGTAGTTGCTGTCGT
GAGTACACGCACCTGAACCGATGTGACAAAATATTGAGAGGGCGCGTCTG
TGCGGACGAAGACCAGCTACAGCTGCTGCTATACGACATGCAACCCCTCT
TCACGCCCAAACGTCCTACCCAGAAAATATGCGCTACATGCTCTACTACA
TGATACAACAAATGATAAAAGGTCCCGATCGACCCTTTCCTAACCTCAGG
TCTTCGGTCCTACGGCCCCGGCAAGCGGAAAGCCTCCGATTGCTCCGCCG
CCTATGCGTCGCCCCCAGCACGCCAGGAAGCCGGCGTTCGGTGGGTTCCC
GGCCACCCCCAGCCCGGCCACCACGGCCGGCCCAACGACCCGCCCGTCGG
TACTCAACTCGCCGAGCGTGCGTAGAGCGGGCGGGGCCAGAGGGGCGGCA
GCGGCGGGTGCGTCAGCGTCGACGTCGGCCGTGGGGCCGGCGGTGGTGGT
GGCGGCGACGGGGGCGACGGGGGCGACGGGGGTGACGGGGGTGACGGCAG
TGATGCCCCCCACAGCGGCCTCGCTCCCAGCGGCGGTGGCAGTGATGCCC
GCCGCGGTGCCCTCGGGGCGCCTCTCGTACGGATCGCTGGCAGTGGCGGT
GAATGCGGCGGTGGCGGCGGCGGCGGCGACGGCGGTGAGGCCTCCCCCCA
CGCCTCCCGGGCAGCTTTTCGGAGCCCCCACCTCGCTGCCCTTCCTGTTC
CAGAGTCAGGCACTCGCCCGCGACGAGATGGACGTCGACCCGTCCAAGTC
CGAGCGGGTTTCCACTGCCAAGGCGATGATGGCTAACGCCTTGGCCTCGG
TCGCCCAGGTTAAGCTTAACCTCGCGGGCAGGGCCGTGACAAAGGCGGAG
GAAGAGGCGCGAGTGCTGCAAAGTGTCATTGCGGATGCGGACCTTGCGCG
TGCCGTGGCGGCGATGGAGGAGCTCCGCGAGGCGGAGTGGGCGGCGAACC
GCATGGACGTCGATGACGAGGACGACTTCGAAGGGCCGTGGCCGATGGAG
GTGGACGGCTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8691:1558..3069+

>mRNA_E_fasciculatus_S2_contig8691.16800.1 ID=mRNA_E_fasciculatus_S2_contig8691.16800.1|Name=mRNA_E_fasciculatus_S2_contig8691.16800.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=891bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8691:1558..3069+ (Ectocarpus fasciculatus EfasUO2)
AGGTCTTCACCTCGCGCGGACAGGGTCGGCGGTCAGAAGAAGAGGAGGGG
CGCCGGTGCCGCAACTCCTGCTAGCACGGTCTTCGGTCCTACGGCCCCGG
CAAGCGGAAAGCCTCCGATTGCTCCGCCGCCTATGCGTCGCCCCCAGCAC
GCCAGGAAGCCGGCGTTCGGTGGGTTCCCGGCCACCCCCAGCCCGGCCAC
CACGGCCGGCCCAACGACCCGCCCGTCGGTACTCAACTCGCCGAGCGTGC
GTAGAGCGGGCGGGGCCAGAGGGGCGGCAGCGGCGGGTGCGTCAGCGTCG
ACGTCGGCCGTGGGGCCGGCGGTGGTGGTGGCGGCGACGGGGGCGACGGG
GGCGACGGGGGTGACGGGGGTGACGGCAGTGATGCCCCCCACAGCGGCCT
CGCTCCCAGCGGCGGTGGCAGTGATGCCCGCCGCGGTGCCCTCGGGGCGC
CTCTCGTACGGATCGCTGGCAGTGGCGGTGAATGCGGCGGTGGCGGCGGC
GGCGGCGACGGCGGTGAGGCCTCCCCCCACGCCTCCCGGGCAGCTTTTCG
GAGCCCCCACCTCGCTGCCCTTCCTGTTCCAGAGTCAGGCACTCGCCCGC
GACGAGATGGACGTCGACCCGTCCAAGTCCGAGCGGGTTTCCACTGCCAA
GGCGATGATGGCTAACGCCTTGGCCTCGGTCGCCCAGGTTAAGCTTAACC
TCGCGGGCAGGGCCGTGACAAAGGCGGAGGAAGAGGCGCGAGTGCTGCAA
AGTGTCATTGCGGATGCGGACCTTGCGCGTGCCGTGGCGGCGATGGAGGA
GCTCCGCGAGGCGGAGTGGGCGGCGAACCGCATGGACGTCGATGACGAGG
ACGACTTCGAAGGGCCGTGGCCGATGGAGGTGGACGGCTAG
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