mRNA_E_fasciculatus_S2_contig8689.16797.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8689.16797.1
Unique NamemRNA_E_fasciculatus_S2_contig8689.16797.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8689.16797.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8689contigE_fasciculatus_S2_contig8689:4630..5934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size255
Hectar predicted targeting categoryother localisation
Exons2
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842525.3154504-CDS-E_fasciculatus_S2_contig8689:4630..48251696842525.3154504-CDS-E_fasciculatus_S2_contig8689:4630..4825Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8689 4631..4825 -
1696842525.3299975-CDS-E_fasciculatus_S2_contig8689:5877..59341696842525.3299975-CDS-E_fasciculatus_S2_contig8689:5877..5934Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8689 5878..5934 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8689.16797.1prot_E_fasciculatus_S2_contig8689.16797.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8689 4631..5934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8689.16797.1

>prot_E_fasciculatus_S2_contig8689.16797.1 ID=prot_E_fasciculatus_S2_contig8689.16797.1|Name=mRNA_E_fasciculatus_S2_contig8689.16797.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=84bp
TAVAAAGGEVLSSSAGDSASVAATPAQALVTGLVGSPVEAVGSGADVVVE
AASSGSDGGGVVDGSVADTTSTPNEEPPPQQQQQ
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mRNA from alignment at E_fasciculatus_S2_contig8689:4630..5934-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8689.16797.1 ID=mRNA_E_fasciculatus_S2_contig8689.16797.1|Name=mRNA_E_fasciculatus_S2_contig8689.16797.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1305bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8689:4630..5934- (Ectocarpus fasciculatus EfasUO2)
ACTGCCGTTGCTGCCGCTGGCGGGGAAGTGTTGAGCTCATCGGCCGGAGA
TAGCGCGGTGAGCAAAGCGGGGCATCTTTCGGTATCACCCATTCTATCGG
GGTGAGGCGGACGGGGGGCTCGCAGGCATACGTCCGGACGAAATATCCCC
CCGGAGTGTGTTTTGGAGACGTGCATCACTTCCGAGGACCTCCTGCGGAG
TTTTTTGCTATCTCTCTGTTGCAGGCTTGCTCCTTTTGTCTCTGGTCTGA
TTTGCTGTTGTAGAAACGGCACGTTATCGGACGGTGGAGCCCAGGATTTT
GCCCAACCGCTACTGCTGTACGTGACGATAGCGCGCCGTTCGTCGTCTGG
CTTTCGGCCGCAAGCATGCGTAAAAGACGCGCGTCGTATTTGAACAATCC
TCATCCAGCACAAGAATAGGGCCGGCAAAACCTTCTCCAAGCTTTCGCGC
CAAGTCACGCACGTCATCACGACATACGCTTGTCCATGACACGTTTTTCA
AAGCTCGTTTCCGGGCACCCCGCTCTCCGCCCCCCCCCCCCCCACGGGCT
TCACTTTTTGTACATCGCACCCCCTGTCCCCCGATCTATGTATCCCTGTT
TTTCACGGTTTCTTGCGCGCACGCGTGTTGTGCGTTATCTGTGTATGGGC
ATACATAGACCACGATGATCGGCTGACCCATGGAACGGGGTTACCCTTGA
GCGGATGTAAACTCGAAAATATTCGAGGTTCCCAGAAGGCAGACCCGGTT
TTGAAGTGGGAGATGGTGTTTATTCCGCTACCAAGATGGTAATTCTTTCG
TCGTGTGTGTTTGTGTCTCTGTTGTTTCGCATCGACCGAGCTAACCGACT
TGGACCAGTGGAATTACGTCAGTCTCTCACTGCAGCTACAAACGGAAGGG
AGTCCTTTGTAGAGGCCATGGTCTGGGGTTCCGTGAATGGAGACGTGTGT
TTTTTTACGTTTGCATCGACCAAGTTAGCCGAATCACCAACGGCATTCTC
GTCAGTGTCATCGCTGAACTGGGAACAAAAATCACGTCGTGTTTTCCCCC
AGCCCCTGCTAACCCCACAACCCCCGGACCCATTTGTTCGACCTGCCACG
GGCTCCCAGAGTGTAGCAGCCACGCCCGCGCAAGCGTTAGTGACCGGCTT
GGTGGGGTCACCCGTCGAAGCGGTGGGGAGCGGCGCCGACGTTGTCGTTG
AGGCCGCAAGCAGTGGTAGCGACGGCGGTGGCGTCGTCGACGGATCGGTG
GCGGACACGACGAGCACGCCCAACGAGGAACCGCCTCCGCAGCAGCAGCA
GCAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8689:4630..5934-

>mRNA_E_fasciculatus_S2_contig8689.16797.1 ID=mRNA_E_fasciculatus_S2_contig8689.16797.1|Name=mRNA_E_fasciculatus_S2_contig8689.16797.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=252bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8689:4630..5934- (Ectocarpus fasciculatus EfasUO2)
ACTGCCGTTGCTGCCGCTGGCGGGGAAGTGTTGAGCTCATCGGCCGGAGA
TAGCGCGAGTGTAGCAGCCACGCCCGCGCAAGCGTTAGTGACCGGCTTGG
TGGGGTCACCCGTCGAAGCGGTGGGGAGCGGCGCCGACGTTGTCGTTGAG
GCCGCAAGCAGTGGTAGCGACGGCGGTGGCGTCGTCGACGGATCGGTGGC
GGACACGACGAGCACGCCCAACGAGGAACCGCCTCCGCAGCAGCAGCAGC
AG
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