mRNA_E_fasciculatus_S2_contig8684.16794.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8684.16794.1
Unique NamemRNA_E_fasciculatus_S2_contig8684.16794.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8684.16794.1 vs.
Match: V-type (h-atpase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPL3_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 1.220e-59
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 1 
Query:    1 MTSSSEVFCTNDYCNAGWPEVLTHMSPWGWANLGIGFALGLSVLGAGWGIFLTGSSIMGAAVKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKI 288
            MTSS+EVFCTND CNAGWPEVLTHMSPWGWANLGIGFALGLSVLGAGWGIFLTGSSIMGAAVKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKI
Sbjct:    1 MTSSTEVFCTNDLCNAGWPEVLTHMSPWGWANLGIGFALGLSVLGAGWGIFLTGSSIMGAAVKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKI 96
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BLAST of mRNA_E_fasciculatus_S2_contig8684.16794.1 vs.
Match: V-type (h-atpase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTX8_9STRA)

HSP 1 Score: 159 bits (402), Expect = 9.970e-48
Identity = 77/95 (81.05%), Postives = 87/95 (91.58%), Query Frame = 1 
Query:    4 TSSSEVFCTNDYCNAGWPEVLTHMSPWGWANLGIGFALGLSVLGAGWGIFLTGSSIMGAAVKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKI 288
            TS SEV C++D+CN GWP+VLTHMSP+GWA +GI FALG S++GA WGIF+TGSSIMGAA+KAPRIRSKNLVSVIFCEATAIYGVIMAIIL NKI
Sbjct:    4 TSPSEVLCSSDHCNQGWPDVLTHMSPFGWAYMGIAFALGFSIVGAAWGIFVTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILLNKI 98
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BLAST of mRNA_E_fasciculatus_S2_contig8684.16794.1 vs.
Match: V-type (H+-transporting ATPase 21kDa proteolipid subunit n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5KNU3_FISSO)

HSP 1 Score: 149 bits (376), Expect = 9.080e-44
Identity = 73/96 (76.04%), Postives = 86/96 (89.58%), Query Frame = 1 
Query:    1 MTSSSEVFCTNDYCNAGWPEVLTHMSPWGWANLGIGFALGLSVLGAGWGIFLTGSSIMGAAVKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKI 288
            M  +S + C +D+CNAGW EVLTHMSP+G+AN G+ F LGLS++GA WGI+LTGSS++GAAVKAPRIRSKNL+SVIFCEATAIYGVIMAIILTNKI
Sbjct:    1 MADASSI-CKSDFCNAGWAEVLTHMSPYGFANFGVAFGLGLSIVGAAWGIWLTGSSLVGAAVKAPRIRSKNLISVIFCEATAIYGVIMAIILTNKI 95
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BLAST of mRNA_E_fasciculatus_S2_contig8684.16794.1 vs.
Match: Hypothetical (protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCH4_CYCTE)

HSP 1 Score: 149 bits (375), Expect = 1.250e-43
Identity = 71/93 (76.34%), Postives = 85/93 (91.40%), Query Frame = 1 
Query:   10 SSEVFCTNDYCNAGWPEVLTHMSPWGWANLGIGFALGLSVLGAGWGIFLTGSSIMGAAVKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKI 288
            SS   C++++CNAGW EVLTH+SP+G+AN G+ F LGLSV+GA WGI+LTGSS++GAAVKAPRIRSKNL+SVIFCEATAIYGVIMAIILTNK+
Sbjct:    2 SSTATCSSEFCNAGWSEVLTHLSPYGYANFGVAFGLGLSVVGAAWGIWLTGSSLVGAAVKAPRIRSKNLISVIFCEATAIYGVIMAIILTNKV 94
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BLAST of mRNA_E_fasciculatus_S2_contig8684.16794.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PCT9_9STRA)

HSP 1 Score: 147 bits (371), Expect = 5.520e-43
Identity = 71/88 (80.68%), Postives = 80/88 (90.91%), Query Frame = 1 
Query:   25 CTNDYCNAGWPEVLTHMSPWGWANLGIGFALGLSVLGAGWGIFLTGSSIMGAAVKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKI 288
            C + YCN GW EVLTHMSP+GWA+ G+ F LGLSV+GA WGI+LTGSS++GAAVKAPRIRSKNL+SVIFCEATAIYGVIMAIILTNKI
Sbjct:    8 CQSAYCNQGWSEVLTHMSPYGWASFGVAFGLGLSVVGAAWGIWLTGSSLVGAAVKAPRIRSKNLISVIFCEATAIYGVIMAIILTNKI 95
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BLAST of mRNA_E_fasciculatus_S2_contig8684.16794.1 vs.
Match: Uncharacterized (protein n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FVY4_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.530e-42
Identity = 71/92 (77.17%), Postives = 83/92 (90.22%), Query Frame = 1 
Query:   13 SEVFCTNDYCNAGWPEVLTHMSPWGWANLGIGFALGLSVLGAGWGIFLTGSSIMGAAVKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKI 288
            S + CT++YCN GW EVLTHMSP+G+AN G+ F LGLSV+GA WGI+LTGSS++GAAVKAPRI+SKNLVSVIFCEATAIYG+IMAIIL NKI
Sbjct:    2 SSLTCTSEYCNQGWSEVLTHMSPYGFANFGVAFGLGLSVIGAAWGIWLTGSSLVGAAVKAPRIKSKNLVSVIFCEATAIYGLIMAIILGNKI 93
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BLAST of mRNA_E_fasciculatus_S2_contig8684.16794.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W489_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.990e-42
Identity = 70/93 (75.27%), Postives = 85/93 (91.40%), Query Frame = 1 
Query:   10 SSEVFCTNDYCNAGWPEVLTHMSPWGWANLGIGFALGLSVLGAGWGIFLTGSSIMGAAVKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKI 288
            S++ +C++ YCN GW EVL+HMSP+G+AN G+ F LGLSV+GA WGI+LTGSS++GAAVKAPRIRSKNL+SVIFCEATAIYGVIMAIIL+NKI
Sbjct:    2 SNQDYCSSKYCNEGWLEVLSHMSPYGYANFGVAFGLGLSVVGAAWGIWLTGSSLVGAAVKAPRIRSKNLISVIFCEATAIYGVIMAIILSNKI 94
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8684.16794.1 vs.
Match: V-type (h-atpase subunit n=5 Tax=Bacillariophyta TaxID=2836 RepID=B8BS55_THAPS)

HSP 1 Score: 145 bits (367), Expect = 2.040e-42
Identity = 71/88 (80.68%), Postives = 80/88 (90.91%), Query Frame = 1 
Query:   25 CTNDYCNAGWPEVLTHMSPWGWANLGIGFALGLSVLGAGWGIFLTGSSIMGAAVKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKI 288
            C + YCNAGW EVLTHMSP+G+AN GI F LGLSV+GA WGI+LTGSS++GAAVKAPRIRSKNL+SVIFCEATAIYGVIMAIIL NK+
Sbjct:    6 CYSTYCNAGWSEVLTHMSPYGYANFGIAFGLGLSVVGAAWGIWLTGSSLVGAAVKAPRIRSKNLISVIFCEATAIYGVIMAIILANKV 93
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8684.16794.1 vs.
Match: Hypothetical (protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8NET8_9STRA)

HSP 1 Score: 145 bits (366), Expect = 3.450e-42
Identity = 73/94 (77.66%), Postives = 82/94 (87.23%), Query Frame = 1 
Query:    7 SSSEVFCTNDYCNAGWPEVLTHMSPWGWANLGIGFALGLSVLGAGWGIFLTGSSIMGAAVKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKI 288
            SSS   C+  YCNAGW EVL  MSP+G+ANLGI F LGLSV+GA WGI+LTGSS++GAAVKAPRIRSKNL+SVIFCEATAIYGVIMAIIL NK+
Sbjct:    2 SSSASICSTKYCNAGWSEVLMSMSPYGFANLGIAFGLGLSVVGAAWGIWLTGSSLVGAAVKAPRIRSKNLISVIFCEATAIYGVIMAIILANKV 95
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8684.16794.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6T7QKL8_9STRA)

HSP 1 Score: 144 bits (364), Expect = 5.830e-42
Identity = 70/88 (79.55%), Postives = 80/88 (90.91%), Query Frame = 1 
Query:   25 CTNDYCNAGWPEVLTHMSPWGWANLGIGFALGLSVLGAGWGIFLTGSSIMGAAVKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKI 288
            C++ YCN GW EVLTHMSP+G+AN GI F LGLSV+GA WGI+LTGSS++GAAVKAPRIRSKNL+SVIFCEATAIYGVIMAIIL NK+
Sbjct:    6 CSSAYCNQGWSEVLTHMSPYGYANFGIAFGLGLSVVGAAWGIWLTGSSLVGAAVKAPRIRSKNLISVIFCEATAIYGVIMAIILANKV 93
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8684.16794.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
V-type1.220e-5997.92h-atpase subunit n=1 Tax=Ectocarpus siliculosus Ta... [more]
V-type9.970e-4881.05h-atpase subunit n=1 Tax=Tribonema minus TaxID=303... [more]
V-type9.080e-4476.04H+-transporting ATPase 21kDa proteolipid subunit n... [more]
Hypothetical1.250e-4376.34protein n=1 Tax=Cyclophora tenuis TaxID=216820 Rep... [more]
Hypothetical5.520e-4380.68protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
Uncharacterized1.530e-4277.17protein n=2 Tax=Bacillariaceae TaxID=33852 RepID=A... [more]
Hypothetical1.990e-4275.27protein n=1 Tax=Pseudictyota dubia TaxID=2749911 R... [more]
V-type2.040e-4280.68h-atpase subunit n=5 Tax=Bacillariophyta TaxID=283... [more]
Hypothetical3.450e-4277.66protein n=1 Tax=Proboscia inermis TaxID=420281 Rep... [more]
Hypothetical5.830e-4279.55protein n=1 Tax=Skeletonema marinoi TaxID=267567 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8684contigE_fasciculatus_S2_contig8684:465..752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score190.7
Seed ortholog evalue3.3e-46
Seed eggNOG ortholog2880.D7FPL3
Preferred nameATP6V0B
Model size288
KEGG rclassRC00002,RC03462
KEGG koko:K03661,ko:K15376
KEGG TC3.A.2.2
KEGG ReactionR09726,R09735
KEGG Pathwayko00190,ko00790,ko01100,ko04142,ko04145,ko04721,ko04727,ko05110,ko05120,ko05152,ko05323,map00190,map00790,map01100,map04142,map04145,map04721,map04727,map05110,map05120,map05152,map05323
KEGG ModuleM00160
Hectar predicted targeting categorysignal anchor
GOsGO:0000041,GO:0000220,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0001763,GO:0002009,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006885,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007424,GO:0007430,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008553,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009888,GO:0009894,GO:0009987,GO:0010008,GO:0010033,GO:0010243,GO:0010506,GO:0012505,GO:0012506,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015682,GO:0015833,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030139,GO:0030641,GO:0030659,GO:0030666,GO:0030670,GO:0031090,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033176,GO:0033177,GO:0033179,GO:0033181,GO:0033572,GO:0034220,GO:0035239,GO:0035295,GO:0036442,GO:0042221,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044769,GO:0045184,GO:0045335,GO:0045851,GO:0046961,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0060429,GO:0060446,GO:0060541,GO:0060562,GO:0061138,GO:0065007,GO:0065008,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071944,GO:0072512,GO:0090662,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
Exons1
EggNOG free text desc.ATP hydrolysis coupled proton transport
EggNOG OGsCOG0636@1,KOG0233@2759
EC2.10.1.1,2.7.7.75
Cds size288
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842525.191503-CDS-E_fasciculatus_S2_contig8684:464..7521696842525.191503-CDS-E_fasciculatus_S2_contig8684:464..752Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8684 465..752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8684.16794.1prot_E_fasciculatus_S2_contig8684.16794.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8684 465..752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8684.16794.1

>prot_E_fasciculatus_S2_contig8684.16794.1 ID=prot_E_fasciculatus_S2_contig8684.16794.1|Name=mRNA_E_fasciculatus_S2_contig8684.16794.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=96bp
MTSSSEVFCTNDYCNAGWPEVLTHMSPWGWANLGIGFALGLSVLGAGWGI
FLTGSSIMGAAVKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKI
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mRNA from alignment at E_fasciculatus_S2_contig8684:465..752-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8684.16794.1 ID=mRNA_E_fasciculatus_S2_contig8684.16794.1|Name=mRNA_E_fasciculatus_S2_contig8684.16794.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=288bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8684:465..752- (Ectocarpus fasciculatus EfasUO2)
ATGACTTCATCATCGGAGGTGTTCTGCACGAACGACTACTGCAATGCGGG
CTGGCCGGAGGTTCTCACGCATATGTCGCCCTGGGGCTGGGCCAACCTTG
GCATTGGCTTTGCCCTGGGTCTCTCCGTGCTGGGGGCGGGGTGGGGCATC
TTCCTGACGGGGTCGAGCATCATGGGGGCAGCCGTGAAGGCTCCCCGTAT
TAGGTCGAAGAACTTGGTTAGCGTGATTTTCTGCGAAGCGACCGCGATTT
ACGGAGTGATCATGGCGATCATCCTCACCAACAAAATT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8684:465..752-

>mRNA_E_fasciculatus_S2_contig8684.16794.1 ID=mRNA_E_fasciculatus_S2_contig8684.16794.1|Name=mRNA_E_fasciculatus_S2_contig8684.16794.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=288bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8684:465..752- (Ectocarpus fasciculatus EfasUO2)
ATGACTTCATCATCGGAGGTGTTCTGCACGAACGACTACTGCAATGCGGG
CTGGCCGGAGGTTCTCACGCATATGTCGCCCTGGGGCTGGGCCAACCTTG
GCATTGGCTTTGCCCTGGGTCTCTCCGTGCTGGGGGCGGGGTGGGGCATC
TTCCTGACGGGGTCGAGCATCATGGGGGCAGCCGTGAAGGCTCCCCGTAT
TAGGTCGAAGAACTTGGTTAGCGTGATTTTCTGCGAAGCGACCGCGATTT
ACGGAGTGATCATGGCGATCATCCTCACCAACAAAATT
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