mRNA_E_fasciculatus_S2_contig8670.16783.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8670.16783.1 vs.
Match: Transmembrane (protein 18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI97_ECTSI) HSP 1 Score: 378 bits (971), Expect = 2.740e-132 Identity = 194/203 (95.57%), Postives = 201/203 (99.01%), Query Frame = 1
Query: 1 MATVEEKVDQAIAEGLGEEALAEKFEQHGEAFNGFLGDVQANVLSQLNAHSVGPEGFVENFEAFRSAVDWTEPWIQGILVFHLLLWLFFIVTRRSFGAQVGLFAVILTGTRLSEFINTCLRDRWQDFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFKREIAAKKDGGKSKAKRGAKDKKASKQA 609
MATV EKVDQAIAEGLGEEALAEKFEQHG+AF GFLGDVQAN+LSQLNAHSVGPEGFVENF+AFRSAVDW+EPWIQGILVFHLLLW+FFIVTRRSFGAQVGLFAV+LTGTRLSEFINTCLRDRWQ+FSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFKREIAAKKDGGKSKAKRGAKDKKASKQA
Sbjct: 1 MATVAEKVDQAIAEGLGEEALAEKFEQHGDAFTGFLGDVQANLLSQLNAHSVGPEGFVENFQAFRSAVDWSEPWIQGILVFHLLLWVFFIVTRRSFGAQVGLFAVVLTGTRLSEFINTCLRDRWQNFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFKREIAAKKDGGKSKAKRGAKDKKASKQA 203
BLAST of mRNA_E_fasciculatus_S2_contig8670.16783.1 vs.
Match: Transmembrane (protein 18 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0G5_9STRA) HSP 1 Score: 135 bits (341), Expect = 2.150e-36 Identity = 68/152 (44.74%), Postives = 99/152 (65.13%), Query Frame = 1
Query: 97 NGFLGDVQANVLSQLNAHSVGPEGFVENFEAFRSAVDWTEPWIQGILVFHLLLWLFFIVTRRSFGAQVGLFAVILTGTRLSEFINTCLRDRWQDFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFKREIAAKKD 552
N + ++ VL GPEGF EN EAF++AV+W E WIQGIL FH+++++ +V R++F QV +F +I+ SE INT ++ WQ+FS Q+YFD +G+FM VM+AGPLL++GF L + L +A LLV VK + K+ + K D
Sbjct: 50 NEMIASLEDQVLQMARESGAGPEGFWENVEAFKAAVNWEERWIQGILAFHVIVFVLMLVFRKNFNVQVCIFLLIVGLVSCSETINTLGQNHWQEFSTQDYFDPNGLFMMVMFAGPLLLIGFLQLFNFLLISADLLVKVKRAELKKHMREKND 201
BLAST of mRNA_E_fasciculatus_S2_contig8670.16783.1 vs.
Match: Transmembrane (protein 18 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFQ2_9STRA) HSP 1 Score: 134 bits (336), Expect = 2.200e-36 Identity = 68/149 (45.64%), Postives = 98/149 (65.77%), Query Frame = 1
Query: 103 FLGDVQANVLSQLNAHSVGPEGFVENFEAFRSAVDWTEPWIQGILVFHLLLWLFFIVTRRSFGAQVGLFAVILTGTRLSEFINTCLRDRWQDFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFKREIAAKK 549
F+ ++AN+L Q GP+GF+EN +AF +AVDW+E WIQ IL FH+ + +++R Q+ LF I R +E+ N RW+DF+RQNYFDE G+F+GV+W PLL++ ML+ + ++A LLVTVK Q +REIAA+K
Sbjct: 12 FIASLEANML-QAAKSGPGPQGFIENCQAFCAAVDWSETWIQAILCFHVAVAAAALLSRNRLNCQIALFLSICALVRGAEWANAYAARRWRDFARQNYFDERGVFVGVVWCAPLLLVLLGMLLGFVVRSARLLVTVKRAQLRREIAARK 159
BLAST of mRNA_E_fasciculatus_S2_contig8670.16783.1 vs.
Match: Transmembrane (protein 18 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3H0_9STRA) HSP 1 Score: 120 bits (302), Expect = 1.160e-30 Identity = 66/151 (43.71%), Postives = 91/151 (60.26%), Query Frame = 1
Query: 106 LGDVQANVLSQLNAHSV--GPEGFVENFEAFRSAVDWTEPWIQGILVFHLLLWLFFIVTRRSFGAQVGLFAVILTGTRLSEFINTCLRDRWQDFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFK---REIAA 543
L DV + Q+ A V P+ F E AF +AVDW E WI+ +L++HL LW+ F+ TR++F Q GLF I L+E +N RW+ F+ QNYFDE G+F G+M PLL L F ML++ L +S+LVTVK +F+ RE+ A
Sbjct: 31 LNDVVEGLKDQIFADHVKGAPQTFREECAAFIAAVDWRENWIRCLLLWHLSLWVLFVFTRKNFPVQCGLFFGIAACVALAETLNGLCAKRWEKFATQNYFDERGVFAGIMLCAPLLALAFAMLLNFLVMASSMLVTVKRAEFRGKARELGA 181
BLAST of mRNA_E_fasciculatus_S2_contig8670.16783.1 vs.
Match: Transmembrane (protein 18 n=4 Tax=Salix TaxID=40685 RepID=A0A837A383_9ROSI) HSP 1 Score: 114 bits (284), Expect = 1.620e-28 Identity = 55/140 (39.29%), Postives = 86/140 (61.43%), Query Frame = 1
Query: 112 DVQANVLSQLNAH-SVGPEGFVENFEAFRSAVDWTEPWIQGILVFHLLLWLFFIVTRRSFGAQVGLFAVILTGTRLSEFINTCLRDRWQDFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFK 528
D A+++ +L++ G + ++NF F A+DW EPWI G+ FHLLL + IV+R+ Q+ LF + L G LSE +N L D W+ F+ QNYFD HG+F+ V+W+GPLLI+ +L++ L ++V K + +
Sbjct: 13 DQMADLVQKLSSELRSGIKPSIDNFVGFFHAIDWKEPWIMGLTGFHLLLLILTIVSRKHINFQMSLFLLALAGVYLSERLNRVLSDNWRSFASQNYFDPHGVFLSVLWSGPLLIIAIIILINTLFSLCYMIVRWKRAELR 152
BLAST of mRNA_E_fasciculatus_S2_contig8670.16783.1 vs.
Match: Transmembrane (protein 18 n=2 Tax=Asteraceae TaxID=4210 RepID=A0A5N6P3C3_9ASTR) HSP 1 Score: 113 bits (283), Expect = 2.160e-28 Identity = 55/146 (37.67%), Postives = 87/146 (59.59%), Query Frame = 1
Query: 91 AFNGFLGDVQANVLSQLNAHSVGPEGFVENFEAFRSAVDWTEPWIQGILVFHLLLWLFFIVTRRSFGAQVGLFAVILTGTRLSEFINTCLRDRWQDFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFK 528
A N L +Q V + +G + ++NF F A+DW EPW+ G++VFHL++ + I +R++ Q+ LF + L G L+E +NT L + W+ F+ QNYFD HG+F+ V+W+GPLL+ +LV+ L L+V K + K
Sbjct: 7 AMNDHLDQMQEIVEKFSSELRIGMQPAMDNFIGFFHAIDWKEPWLVGLMVFHLVVLIIIITSRKNINFQMYLFLLSLAGVYLAERLNTVLSNNWKSFAGQNYFDRHGVFLSVLWSGPLLVFATIILVNTLFSLCHLIVKWKRAELK 152
BLAST of mRNA_E_fasciculatus_S2_contig8670.16783.1 vs.
Match: Transmembrane (protein 18 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGF8_9STRA) HSP 1 Score: 113 bits (283), Expect = 3.630e-28 Identity = 57/146 (39.04%), Postives = 85/146 (58.22%), Query Frame = 1
Query: 97 NGFLGDVQANVLSQLNAHSVGPEGFVENFEAFRSAVDWTEPWIQGILVFHLLLWLFFIVTRRSFGAQVGLFAVILTGTRLSEFINTCLRDRWQDFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFKRE 534
N + +Q V + P G +++ +AF +AVDW+E WIQ +L FH+ LW+ + TRR Q G F + +E +NT WQDFS+Q+YF +G F+GVM+A PLL L +++ LC A+LLV VK K+ +R+
Sbjct: 28 NDIIESLQEQVYTMAREAGNAPSGLLDDIQAFTAAVDWSERWIQALLGFHVALWMITLWTRRYIWWQCGTFFAVCGLVWSAEPMNTWAAAHWQDFSKQDYFQPNGFFVGVMYAAPLLALAMFQMINFLCIAANLLVEVKRKELRRK 173
BLAST of mRNA_E_fasciculatus_S2_contig8670.16783.1 vs.
Match: Transmembrane (protein 18 n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6L7N8_LACSA) HSP 1 Score: 112 bits (281), Expect = 4.300e-28 Identity = 52/146 (35.62%), Postives = 86/146 (58.90%), Query Frame = 1
Query: 91 AFNGFLGDVQANVLSQLNAHSVGPEGFVENFEAFRSAVDWTEPWIQGILVFHLLLWLFFIVTRRSFGAQVGLFAVILTGTRLSEFINTCLRDRWQDFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFK 528
A NG + +Q V + +G + ++NF F A+DW EPW+ G++VFH + + + +R++ Q+ LF + L G L+E +NT L D W+ F+ QNYFD +G+F+ V+W+GPLL+ +LV+ L L+V K + +
Sbjct: 7 AMNGHMDQMQELVEKISSELRIGMQPAMDNFIGFFHAIDWKEPWLVGLMVFHFVTLIIILTSRKNINFQMSLFLLSLAGVYLAERLNTVLSDNWKSFAGQNYFDRNGVFLSVLWSGPLLVFSLIILVNTLFSLCQLMVKWKRAELR 152
BLAST of mRNA_E_fasciculatus_S2_contig8670.16783.1 vs.
Match: Transmembrane (protein 18 n=8 Tax=Populus TaxID=3689 RepID=U5FW19_POPTR) HSP 1 Score: 111 bits (277), Expect = 1.810e-27 Identity = 53/140 (37.86%), Postives = 85/140 (60.71%), Query Frame = 1
Query: 112 DVQANVLSQLNAH-SVGPEGFVENFEAFRSAVDWTEPWIQGILVFHLLLWLFFIVTRRSFGAQVGLFAVILTGTRLSEFINTCLRDRWQDFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFK 528
D A+++ +L++ G ++NF F A+DWTEPW+ G++ FHL L + +V+R+ Q+ F V L G LSE +N L D W+ F+ QNYFD HG+F+ V+W+GPLLI+ +L++ L ++V K + +
Sbjct: 13 DQMADLVQKLSSELRSGFRPAIDNFIGFFHAIDWTEPWLMGLIGFHLALLILTVVSRKHINFQMSFFLVALAGVYLSERLNRVLGDNWRSFASQNYFDPHGLFLSVLWSGPLLIIATIILINTLFSLCFMIVRWKRAELR 152
BLAST of mRNA_E_fasciculatus_S2_contig8670.16783.1 vs.
Match: Transmembrane (protein 18 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5GRS7_9STRA) HSP 1 Score: 112 bits (281), Expect = 3.080e-27 Identity = 62/162 (38.27%), Postives = 99/162 (61.11%), Query Frame = 1
Query: 55 EALAEKFEQHGEAFNGFLGDVQANVLSQLNAHSVGPEGFVENFEAFRSAVDWTEPWIQGILVFHLLLWLFFIVTRRS--FGAQVGLFAVILTGTRLSEFINTCLRDRWQDFSRQNYFDEHGIFMGVMWAGPLLILGFTMLVSLLCQTASLLVTVKTKQFKRE 534
+A AE EQHG + G NVL A SVGP+ F E+ AF SA++W EP+I+ +L H+++ L ++ R FG QV F ++ T +E++NT W+DF+ QNYFD+ G+F+GVM+A PL+++ M++ ++ + + LLV VK + K++
Sbjct: 61 DASAEAAEQHGSSLMG----AADNVLRDAFAGSVGPQTFREHIAAFSSAINWGEPFIRCLLALHVVMILLAVIFSRKKIFGGQVATFGLLATLVWRTEWLNTYGAAHWRDFATQNYFDKGGVFVGVMYAAPLMLICLCMIIDMVHEASGLLVQVKRLEIKKK 218 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8670.16783.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8670.16783.1 >prot_E_fasciculatus_S2_contig8670.16783.1 ID=prot_E_fasciculatus_S2_contig8670.16783.1|Name=mRNA_E_fasciculatus_S2_contig8670.16783.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=204bp MATVEEKVDQAIAEGLGEEALAEKFEQHGEAFNGFLGDVQANVLSQLNAHback to top mRNA from alignment at E_fasciculatus_S2_contig8670:1269..4439- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8670.16783.1 ID=mRNA_E_fasciculatus_S2_contig8670.16783.1|Name=mRNA_E_fasciculatus_S2_contig8670.16783.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3171bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8670:1269..4439- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8670:1269..4439- >mRNA_E_fasciculatus_S2_contig8670.16783.1 ID=mRNA_E_fasciculatus_S2_contig8670.16783.1|Name=mRNA_E_fasciculatus_S2_contig8670.16783.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=612bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8670:1269..4439- (Ectocarpus fasciculatus EfasUO2)back to top |