mRNA_E_fasciculatus_S2_contig8593.16715.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8593.16715.1
Unique NamemRNA_E_fasciculatus_S2_contig8593.16715.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8593.16715.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8593contigE_fasciculatus_S2_contig8593:4564..6192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size596
Hectar predicted targeting categoryother localisation
Exons3
Cds size435
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842517.1358426-UTR-E_fasciculatus_S2_contig8593:4563..46521696842517.1358426-UTR-E_fasciculatus_S2_contig8593:4563..4652Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8593 4564..4652 -
1696842517.1476607-UTR-E_fasciculatus_S2_contig8593:5030..51001696842517.1476607-UTR-E_fasciculatus_S2_contig8593:5030..5100Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8593 5031..5100 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842517.157821-CDS-E_fasciculatus_S2_contig8593:5100..51571696842517.157821-CDS-E_fasciculatus_S2_contig8593:5100..5157Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8593 5101..5157 -
1696842517.1736083-CDS-E_fasciculatus_S2_contig8593:5814..61921696842517.1736083-CDS-E_fasciculatus_S2_contig8593:5814..6192Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8593 5815..6192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8593.16715.1prot_E_fasciculatus_S2_contig8593.16715.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8593 5101..6192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8593.16715.1

>prot_E_fasciculatus_S2_contig8593.16715.1 ID=prot_E_fasciculatus_S2_contig8593.16715.1|Name=mRNA_E_fasciculatus_S2_contig8593.16715.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=145bp
SGPLRLRAPPCSPVLCACRQLQSTSPASSSLRHRAVRAPPLGLHLVLPPV
ARVKRAALAGRGPLQQRRVPPDQRPVLPVVPSRSVVKPNCWAIFAGSTAR
AYQIARELSAATELNQISDRVITAVKFYRHHGLSGCSGQRRGGC*
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mRNA from alignment at E_fasciculatus_S2_contig8593:4564..6192-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8593.16715.1 ID=mRNA_E_fasciculatus_S2_contig8593.16715.1|Name=mRNA_E_fasciculatus_S2_contig8593.16715.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1629bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8593:4564..6192- (Ectocarpus fasciculatus EfasUO2)
TCCGGCCCTCTCCGTCTTCGAGCTCCTCCCTGCTCTCCAGTCCTGTGTGC
ATGTCGTCAGCTTCAATCAACGTCTCCAGCATCCTCATCTCTTCGTCATC
GCGCCGTCCGAGCTCCTCCTCTCGGGCTGCATCTGGTTCTTCCTCCGGTC
GCCCGCGTCAAGCGGGCGGCCCTCGCGGGTCGGGGTCCTCTGCAACAGCG
TCGAGTTCCGCCGGATCAGCGCCCAGTTCTGCCGGTGGTGCCTAGCAGGT
CCGTCGTGAAGCCCAACTGTTGGGCTATTTTTGCGGGATCCACCGCTAGA
GCTTACCAGATTGCCAGGGAGCTTTCAGCAGCTACGGAGCTCAACCAGAT
CTCCGACCGCGTGATCACAGCAGTCAAGGTGAGGTGGTCTCGTTGTTTTT
CGGTCGAGCGAGTTCTTCTTCGTGAGTGTTATTTTTGTTCCGTATTTTAA
TGGTTTGATTGTTCGCCAGCTGTCTATGCTTTTATGATGCCTTGTCTCCC
TGAACATCGCGCTATGCTTCGGCTGTTTCTTTCTCGCTTTGCGCAGTATC
CGTTTAGAGGTATTATCCAAGCCCGCTGGTTCTCGGTAACTTGCGGAGTG
TGCTGATATGTATCTTCATCTTGCTTCCCTTCCTGTGTGTATGCTTTTTG
TTAGCAAATTTTTAATTTCACCGAATAGTTCCACGTTGTTCCAGCGATAT
ATTTGTTCAAGCGTGTTTGCTTGTTTTCCTTCACAACGCTTCCCGTTCCT
TAATGCATAGCATTCTGTTTTGTCCTAATGCGGGTCGTGTGTATCCCTGT
TTGCTTTCATTCTGACGCCCTGCGTATCATCTCATACAGACAACGAGGAT
CCTCGTACGTTCGCGATGTCTATTGGCTGTATTTTGTGGCTTCTTCGTCT
CAATCGAAGAGAAGGGAAAGATTTTTACCAATGAATCAATTCTTGTTTTT
CTCTGCGTTTCACATTTCCACTGACTGCTCTTTTGACTTTTGTACTGGTT
GGTGTTCACCTCCTCCCTATTACGTTTTTACCCAGTTCTATCGACATCAT
GGCCTCTCCGGCTGCTCCGGACAACGTCGCGGAGGATGTTGACGAGGACG
GGGACGTGAACATCTCCGACTGTCCTGCTATGCGGCTGCCGTTCAGCCCG
TAATCTCTGCCGGTGTGTTATCGGGTCTTGTATGTCTTTCTATCTCGTTC
TCCGTTCTAGACTTTTTTGTCAAACGCGCACAACACTTGCCCGTTCTGAA
AAGGTCGTGAGAATGGCCCTACTACGTTTTCTCTTTTGCTTCCTGGGTTC
CATGCTGCTATTCCTAGTGAATGTTGCTATCCCCTTTTTTCCCTGCATTT
ATTTTGATTTTTGCAAGATTTTCCATTCATCGCTGGTCCCGCTTTTCTTG
CTGTGACGCTGGCTCTTTCTTTCCTTTTTTGCTGTACCTTTCTATCGCGT
TGATGCTCTACTTCCTGCATGTCCCATTTTTGACATGTGCTTCTTCGCAT
CCTCTTGTTTCTTGTTCTTTTTTTTTTTCATGTTTTCCAGCCTGTGAGGT
GCGGGCGCCGCAACTGGCTTTCCCTGTTCGATGAAAGCGCTGTAGACGCG
ATTGCTCGCTCTGGTGACGATGATGACGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8593:4564..6192-

>mRNA_E_fasciculatus_S2_contig8593.16715.1 ID=mRNA_E_fasciculatus_S2_contig8593.16715.1|Name=mRNA_E_fasciculatus_S2_contig8593.16715.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=435bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8593:4564..6192- (Ectocarpus fasciculatus EfasUO2)
TCCGGCCCTCTCCGTCTTCGAGCTCCTCCCTGCTCTCCAGTCCTGTGTGC
ATGTCGTCAGCTTCAATCAACGTCTCCAGCATCCTCATCTCTTCGTCATC
GCGCCGTCCGAGCTCCTCCTCTCGGGCTGCATCTGGTTCTTCCTCCGGTC
GCCCGCGTCAAGCGGGCGGCCCTCGCGGGTCGGGGTCCTCTGCAACAGCG
TCGAGTTCCGCCGGATCAGCGCCCAGTTCTGCCGGTGGTGCCTAGCAGGT
CCGTCGTGAAGCCCAACTGTTGGGCTATTTTTGCGGGATCCACCGCTAGA
GCTTACCAGATTGCCAGGGAGCTTTCAGCAGCTACGGAGCTCAACCAGAT
CTCCGACCGCGTGATCACAGCAGTCAAGTTCTATCGACATCATGGCCTCT
CCGGCTGCTCCGGACAACGTCGCGGAGGATGTTGA
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