mRNA_E_fasciculatus_S2_contig8586.16706.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8586.16706.1
Unique NamemRNA_E_fasciculatus_S2_contig8586.16706.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8586.16706.1 vs.
Match: Tr-type (G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFF2_9PHAE)

HSP 1 Score: 633 bits (1632), Expect = 1.580e-226
Identity = 334/350 (95.43%), Postives = 338/350 (96.57%), Query Frame = 1 
Query:    4 MALRLAANRASVRARSKCAESFKLSSALRATQRVGPAEPRLSGASAAATAELSTFERSKPHVNIGTIGHVDHGKTTLTAAITKVLSDKGLCKARTYTDIDNAPEEKARKITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSVTDGPMPQTREHILLAHQASQSLVGVPELVVFLNKVDLLSEGDAELQELVEMEIRELLSFYKFDGDDIPLVAGSALAAVEGRDKEVGEDAIMELMEAVDAHIPTPERALDKPFLMPVEDVFSIAGRGTVVTGRVEQGIVKVGDELEISGIGSVVKTTCTGVEMFKKLLSQGQAGDNIGALLRGLKREDVQRGQV 1053
            MALRLA NRASVRARSKC ESFKLSSALRAT+  GPAEPRLSGASAAA  ELSTFERSKPHVNIGTIGHVDHGKTTLTAAITKVLSD+GLCKARTYTDIDNAPEEKARKITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDG ILVVSVTDGPMPQTREHILLAHQAS+  VGVPELVVFLNKVDLLSEGDAELQELVEMEIRELLSFYKFDGDDIPLVAGSALAAVEGRDKEVGEDAIMELMEAVD HIPTP RALDKPFLMPVEDVFSIAGRGTVVTGRVEQG+VKVGDELEISGIGSVVKTTCTGVEMFKKLL QGQAGDNIGALLRGLKREDVQRGQV
Sbjct:    1 MALRLAVNRASVRARSKCVESFKLSSALRATRVAGPAEPRLSGASAAA--ELSTFERSKPHVNIGTIGHVDHGKTTLTAAITKVLSDRGLCKARTYTDIDNAPEEKARKITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSVTDGPMPQTREHILLAHQASRLFVGVPELVVFLNKVDLLSEGDAELQELVEMEIRELLSFYKFDGDDIPLVAGSALAAVEGRDKEVGEDAIMELMEAVDEHIPTPARALDKPFLMPVEDVFSIAGRGTVVTGRVEQGVVKVGDELEISGIGSVVKTTCTGVEMFKKLLDQGQAGDNIGALLRGLKREDVQRGQV 348
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BLAST of mRNA_E_fasciculatus_S2_contig8586.16706.1 vs.
Match: Tuf1, (mitochondrial translation elongation factor EF-Tu n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB89_9STRA)

HSP 1 Score: 468 bits (1204), Expect = 8.850e-162
Identity = 237/298 (79.53%), Postives = 264/298 (88.59%), Query Frame = 1 
Query:  160 STFERSKPHVNIGTIGHVDHGKTTLTAAITKVLSDKGLCKARTYTDIDNAPEEKARKITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSVTDGPMPQTREHILLAHQASQSLVGVPELVVFLNKVDLLSEGDAELQELVEMEIRELLSFYKFDGDDIPLVAGSALAAVEGRDKEVGEDAIMELMEAVDAHIPTPERALDKPFLMPVEDVFSIAGRGTVVTGRVEQGIVKVGDELEISGIGSVVKTTCTGVEMFKKLLSQGQAGDNIGALLRGLKREDVQRGQV 1053
            + FER+KPHVNIGTIGHVDHGKTTLTAAIT+VLS++G+ KA +Y +ID APEEKARKITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDG ILVVS TDGPMPQTREHILLA Q     VG+P +VVF+NKVD++   D ELQELVEMEIRELLSFY+F GDD+P++ GSALAAVEGRD+ +G+  I+ELM AVD HIP PERALDK FLMPVEDVFSIAGRGTV TGRVE GI+KVGD+LE+SG+ +  KTTCTGVEMFKKLL QGQAGDNIGALLRGLKR+DV RGQV
Sbjct:   37 TVFERTKPHVNIGTIGHVDHGKTTLTAAITRVLSEQGMAKAFSYEEIDKAPEEKARKITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQ-----VGIPNIVVFMNKVDMVD--DEELQELVEMEIRELLSFYEFKGDDVPIIRGSALAAVEGRDEAIGKQKILELMTAVDEHIPIPERALDKDFLMPVEDVFSIAGRGTVATGRVESGILKVGDDLELSGLKTPTKTTCTGVEMFKKLLDQGQAGDNIGALLRGLKRDDVLRGQV 327
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BLAST of mRNA_E_fasciculatus_S2_contig8586.16706.1 vs.
Match: Elongation (factor Tu n=44 Tax=root TaxID=1 RepID=A0A059FV41_9PROT)

HSP 1 Score: 451 bits (1160), Expect = 1.400e-155
Identity = 232/296 (78.38%), Postives = 259/296 (87.50%), Query Frame = 1 
Query:  166 FERSKPHVNIGTIGHVDHGKTTLTAAITKVLSDKGLCKARTYTDIDNAPEEKARKITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSVTDGPMPQTREHILLAHQASQSLVGVPELVVFLNKVDLLSEGDAELQELVEMEIRELLSFYKFDGDDIPLVAGSALAAVEGRDKEVGEDAIMELMEAVDAHIPTPERALDKPFLMPVEDVFSIAGRGTVVTGRVEQGIVKVGDELEISGIGSVVKTTCTGVEMFKKLLSQGQAGDNIGALLRGLKREDVQRGQV 1053
            FER+KPHVNIGTIGHVDHGKTTLTAAI+ VLS+    +A++Y DID+APEEKAR ITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDG ILVV+  DGPMPQTREHILLA Q     VGVP +VVFLNKVD +   DAEL ELVEME+RELL+ Y F GDDIP++AGSALAAVEGR+ E+G D ++ELM+AVD +IPTPER LDKPFLMPVEDVFSI+GRGTVVTGRVEQGI+KVGDE+EI GI   VK+TCTGVEMF+KLL QGQAGDNIGALLRG+ RE V+RGQV
Sbjct:    6 FERNKPHVNIGTIGHVDHGKTTLTAAISMVLSEASGGEAKSYADIDSAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMPQTREHILLAKQ-----VGVPAMVVFLNKVDQVD--DAELLELVEMEVRELLTSYDFPGDDIPIIAGSALAAVEGRNPEIGRDKVLELMQAVDDYIPTPERPLDKPFLMPVEDVFSISGRGTVVTGRVEQGILKVGDEVEIVGIRDTVKSTCTGVEMFRKLLDQGQAGDNIGALLRGIDREGVERGQV 294
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BLAST of mRNA_E_fasciculatus_S2_contig8586.16706.1 vs.
Match: Elongation (factor Tu n=6 Tax=Proteobacteria TaxID=1224 RepID=A0A1B1AML8_9PROT)

HSP 1 Score: 449 bits (1156), Expect = 5.690e-155
Identity = 234/296 (79.05%), Postives = 253/296 (85.47%), Query Frame = 1 
Query:  166 FERSKPHVNIGTIGHVDHGKTTLTAAITKVLSDKGLCKARTYTDIDNAPEEKARKITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSVTDGPMPQTREHILLAHQASQSLVGVPELVVFLNKVDLLSEGDAELQELVEMEIRELLSFYKFDGDDIPLVAGSALAAVEGRDKEVGEDAIMELMEAVDAHIPTPERALDKPFLMPVEDVFSIAGRGTVVTGRVEQGIVKVGDELEISGIGSVVKTTCTGVEMFKKLLSQGQAGDNIGALLRGLKREDVQRGQV 1053
            FER+KPH NIGTIGHVDHGKTTLTAAIT VL+ KG  KA  Y DID APEEKAR ITINTAHVEYETA+RHYAHVDCPGHADYVKNMITGAAQMDGGILVVS  DGPMPQTREHILLA Q     VGVP LVVF+NKVD++   DAEL +LVEME+RELLS Y F GDDIP+V GSALAAVEGRD  +GEDAIM LM AVD +IP P R LD PFLMPVEDVFSI+GRGTVVTGRVE+G+VKVG+E+EI GI   VKTTCTGVEMF+KLL QGQAGDNIGALLRG+ RE V+RGQV
Sbjct:    6 FERTKPHCNIGTIGHVDHGKTTLTAAITMVLAKKGGAKAMAYADIDAAPEEKARGITINTAHVEYETADRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMPQTREHILLARQ-----VGVPALVVFMNKVDMVD--DAELLDLVEMEVRELLSSYDFPGDDIPIVKGSALAAVEGRDAPIGEDAIMSLMTAVDTYIPQPARPLDMPFLMPVEDVFSISGRGTVVTGRVEKGVVKVGEEIEIIGIRPTVKTTCTGVEMFRKLLDQGQAGDNIGALLRGVDREGVERGQV 294
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BLAST of mRNA_E_fasciculatus_S2_contig8586.16706.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P7T5_9STRA)

HSP 1 Score: 449 bits (1156), Expect = 1.770e-154
Identity = 226/296 (76.35%), Postives = 254/296 (85.81%), Query Frame = 1 
Query:  166 FERSKPHVNIGTIGHVDHGKTTLTAAITKVLSDKGLCKARTYTDIDNAPEEKARKITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSVTDGPMPQTREHILLAHQASQSLVGVPELVVFLNKVDLLSEGDAELQELVEMEIRELLSFYKFDGDDIPLVAGSALAAVEGRDKEVGEDAIMELMEAVDAHIPTPERALDKPFLMPVEDVFSIAGRGTVVTGRVEQGIVKVGDELEISGIGSVVKTTCTGVEMFKKLLSQGQAGDNIGALLRGLKREDVQRGQV 1053
            F R KPHVNIGTIGHVDHGKTTLT AITKVLS+KG  KA TY DID APEEK+RKITINT+H+EYETA RHY H+DCPGHADYVKNMITGAAQMDGGILVV+ TDGPMPQTREHILLA Q     VG+P+LVVFLNK D++   D EL ELVEMEIRELL FY+FDGD+ P++ GSALAA EGRD E+G +A++ELM+AVD +IP PER +DKPFLMPVEDVFSIAGRGTVVTGR+EQG + VGD+LE+ G  +  KTTCTGVEMFKKLL  G AGDN+GALLRGLKREDV+RGQV
Sbjct:   39 FNRDKPHVNIGTIGHVDHGKTTLTQAITKVLSEKGWSKAMTYEDIDRAPEEKSRKITINTSHIEYETATRHYGHIDCPGHADYVKNMITGAAQMDGGILVVAATDGPMPQTREHILLAKQ-----VGIPKLVVFLNKCDMVD--DEELLELVEMEIRELLDFYEFDGDETPIIRGSALAAAEGRDPELGANAVLELMQAVDDNIPEPERDMDKPFLMPVEDVFSIAGRGTVVTGRIEQGKINVGDDLEVIGFNNNQKTTCTGVEMFKKLLDYGMAGDNVGALLRGLKREDVRRGQV 327
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BLAST of mRNA_E_fasciculatus_S2_contig8586.16706.1 vs.
Match: Elongation (factor Tu (Fragment) n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A4Q5WAH8_9PROT)

HSP 1 Score: 446 bits (1146), Expect = 7.860e-154
Identity = 232/296 (78.38%), Postives = 254/296 (85.81%), Query Frame = 1 
Query:  166 FERSKPHVNIGTIGHVDHGKTTLTAAITKVLSDKGLCKARTYTDIDNAPEEKARKITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSVTDGPMPQTREHILLAHQASQSLVGVPELVVFLNKVDLLSEGDAELQELVEMEIRELLSFYKFDGDDIPLVAGSALAAVEGRDKEVGEDAIMELMEAVDAHIPTPERALDKPFLMPVEDVFSIAGRGTVVTGRVEQGIVKVGDELEISGIGSVVKTTCTGVEMFKKLLSQGQAGDNIGALLRGLKREDVQRGQV 1053
            FER+KPH NIGTIGHVDHGKTTLTAAIT  L+  G   A+ Y DID APEEKAR ITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDG ILV S  DGPMPQTREHILLA Q     VGVP LVVFLNKVD++   DAEL ELVEME+RELLS Y+F GDDIP+V GSALAAVEGR+ E+GE+AI+ELM AVD++IP PER +D PFLMPVEDVFSI+GRGTVVTGRVE+GIVKVG+E+EI GI  V KTTCTGVEMF+KLL QGQAGDN+G LLRG KREDV+RGQV
Sbjct:    6 FERNKPHCNIGTIGHVDHGKTTLTAAITITLAKSGGATAKNYADIDAAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQ-----VGVPALVVFLNKVDMVD--DAELLELVEMEVRELLSSYQFPGDDIPVVKGSALAAVEGRNPEIGENAIIELMAAVDSYIPQPERPVDLPFLMPVEDVFSISGRGTVVTGRVERGIVKVGEEVEIVGIRPVQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQV 294
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BLAST of mRNA_E_fasciculatus_S2_contig8586.16706.1 vs.
Match: Elongation (factor Tu n=6 Tax=Proteobacteria TaxID=1224 RepID=A0A1V1PNS9_9PROT)

HSP 1 Score: 445 bits (1145), Expect = 2.660e-153
Identity = 234/296 (79.05%), Postives = 252/296 (85.14%), Query Frame = 1 
Query:  166 FERSKPHVNIGTIGHVDHGKTTLTAAITKVLSDKGLCKARTYTDIDNAPEEKARKITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSVTDGPMPQTREHILLAHQASQSLVGVPELVVFLNKVDLLSEGDAELQELVEMEIRELLSFYKFDGDDIPLVAGSALAAVEGRDKEVGEDAIMELMEAVDAHIPTPERALDKPFLMPVEDVFSIAGRGTVVTGRVEQGIVKVGDELEISGIGSVVKTTCTGVEMFKKLLSQGQAGDNIGALLRGLKREDVQRGQV 1053
            FER+KPH NIGTIGHVDHGKTTLTAAIT VL+ KG  KA +Y DID APEEKAR ITINTAHVEYETA+RHYAHVDCPGHADYVKNMITGAAQMDG ILVVS  DGPMPQTREHILLA Q     VGVP LVVFLNKVD++   DAEL ELVEME+RELLS Y F GDDIP+V GSALAAVEGRD  +GEDAIM LM AVD +IP P R LD PFLMPVEDVFSI+GRGTVVTGRVE+GIVKVG+E+EI GI   VK+T TGVEMF+KLL QGQAGDNIGALLRG+ RE V+RGQV
Sbjct:    6 FERTKPHCNIGTIGHVDHGKTTLTAAITMVLAKKGGAKAMSYADIDAAPEEKARGITINTAHVEYETADRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-----VGVPALVVFLNKVDMVD--DAELLELVEMEVRELLSAYSFPGDDIPIVKGSALAAVEGRDAPIGEDAIMNLMTAVDTYIPQPARPLDMPFLMPVEDVFSISGRGTVVTGRVEKGIVKVGEEIEIIGIRPTVKSTVTGVEMFRKLLDQGQAGDNIGALLRGIDREGVERGQV 294
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BLAST of mRNA_E_fasciculatus_S2_contig8586.16706.1 vs.
Match: Elongation (factor Tu n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KD55_FISSO)

HSP 1 Score: 446 bits (1147), Expect = 3.240e-153
Identity = 228/296 (77.03%), Postives = 251/296 (84.80%), Query Frame = 1 
Query:  166 FERSKPHVNIGTIGHVDHGKTTLTAAITKVLSDKGLCKARTYTDIDNAPEEKARKITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSVTDGPMPQTREHILLAHQASQSLVGVPELVVFLNKVDLLSEGDAELQELVEMEIRELLSFYKFDGDDIPLVAGSALAAVEGRDKEVGEDAIMELMEAVDAHIPTPERALDKPFLMPVEDVFSIAGRGTVVTGRVEQGIVKVGDELEISGIGSVVKTTCTGVEMFKKLLSQGQAGDNIGALLRGLKREDVQRGQV 1053
            F R KPHVNIGTIGHVDHGKTTLT AITKVLS+KG  K+ +Y DID APEEKARKITINT+H+EYETANRHY H+DCPGHADYVKNMITGAAQMDG ILVV  TDGPMPQTREHILLA Q     VG+P LVVFLNK DL+   D EL ELVEMEIRELLSFYKFDGD I +V GSALAA  G + E+G+DAI++LM+AVD HIP P R  DKPFLMP+ED FSIAGRGTVVTGRVEQGIV V DELE+ G+G+  KT CTGVEMF+KLL QG+AGDNIGALLRGLKR+DV+RGQV
Sbjct:   33 FNRDKPHVNIGTIGHVDHGKTTLTQAITKVLSEKGWSKSMSYEDIDRAPEEKARKITINTSHIEYETANRHYGHIDCPGHADYVKNMITGAAQMDGAILVVGATDGPMPQTREHILLAKQ-----VGIPNLVVFLNKCDLVD--DEELLELVEMEIRELLSFYKFDGDAIEIVRGSALAAANGTNDELGKDAILKLMDAVDQHIPEPVRETDKPFLMPIEDTFSIAGRGTVVTGRVEQGIVNVNDELEVIGLGNNKKTVCTGVEMFRKLLDQGRAGDNIGALLRGLKRDDVRRGQV 321
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BLAST of mRNA_E_fasciculatus_S2_contig8586.16706.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XV42_9STRA)

HSP 1 Score: 444 bits (1143), Expect = 3.920e-153
Identity = 226/292 (77.40%), Postives = 247/292 (84.59%), Query Frame = 1 
Query:  178 KPHVNIGTIGHVDHGKTTLTAAITKVLSDKGLCKARTYTDIDNAPEEKARKITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSVTDGPMPQTREHILLAHQASQSLVGVPELVVFLNKVDLLSEGDAELQELVEMEIRELLSFYKFDGDDIPLVAGSALAAVEGRDKEVGEDAIMELMEAVDAHIPTPERALDKPFLMPVEDVFSIAGRGTVVTGRVEQGIVKVGDELEISGIGSVVKTTCTGVEMFKKLLSQGQAGDNIGALLRGLKREDVQRGQV 1053
            KPHVNIGTIGHVDHGKTTLTAAITKVLSDKG  +A +Y DID APEE+ RKITINT+HVEYET NRHYAHVDCPGHADYVKNMITGAAQMDG ILVVS TDG MPQTREHILLA Q     VGVP LVVF+NK+D +   D EL EL+EMEIRELL  Y+F GDD+ +V GSALAAVEGRD E+G+DAI+ LM+AVD HIPTP R LDKPFLMPVEDVFSI GRGTV TGRVEQG+V VGDE+EI GI    KTT TGVEMFKKLL QGQAGDN+G LLRG+KR++V RGQV
Sbjct:    1 KPHVNIGTIGHVDHGKTTLTAAITKVLSDKGFAQASSYEDIDKAPEERERKITINTSHVEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGAMPQTREHILLARQ-----VGVPNLVVFINKLDAIGSEDEELLELIEMEIRELLDMYEFAGDDVEIVRGSALAAVEGRDDEIGKDAILALMDAVDEHIPTPTRVLDKPFLMPVEDVFSIGGRGTVATGRVEQGVVTVGDEVEIIGIRETNKTTVTGVEMFKKLLDQGQAGDNVGCLLRGVKRDEVTRGQV 287
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BLAST of mRNA_E_fasciculatus_S2_contig8586.16706.1 vs.
Match: Translation (factor elongation factor ef-tu n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CA96_THAPS)

HSP 1 Score: 445 bits (1144), Expect = 1.220e-152
Identity = 226/296 (76.35%), Postives = 250/296 (84.46%), Query Frame = 1 
Query:  166 FERSKPHVNIGTIGHVDHGKTTLTAAITKVLSDKGLCKARTYTDIDNAPEEKARKITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSVTDGPMPQTREHILLAHQASQSLVGVPELVVFLNKVDLLSEGDAELQELVEMEIRELLSFYKFDGDDIPLVAGSALAAVEGRDKEVGEDAIMELMEAVDAHIPTPERALDKPFLMPVEDVFSIAGRGTVVTGRVEQGIVKVGDELEISGIGSVVKTTCTGVEMFKKLLSQGQAGDNIGALLRGLKREDVQRGQV 1053
            F R KPHVNIGTIGHVDHGKTTLT AITKVLS+KG  KA +Y DID APEEKARKITINT+H+EYETANRHY H+DCPGHADYVKNMITGAAQMDGGILVV+ TDGPMPQTREHILLA Q     VG+P+LVVFLNK D++   D EL ELVEMEIRELL FY F+GD+ P++ GSALAA EGRD E+G +A++ELM AVD  IP P R LDKPFLMP+EDVFSIAGRGTVVTGR+EQG V VGD+LE+ G     KTTCTGVEMFKKLL  G AGDN+GALLRGLKREDV+RGQV
Sbjct:   40 FNRDKPHVNIGTIGHVDHGKTTLTQAITKVLSEKGWSKAMSYEDIDRAPEEKARKITINTSHIEYETANRHYGHIDCPGHADYVKNMITGAAQMDGGILVVAATDGPMPQTREHILLAKQ-----VGMPKLVVFLNKCDMVD--DEELLELVEMEIRELLDFYDFNGDETPIIRGSALAAAEGRDPELGANAVLELMAAVDETIPEPTRDLDKPFLMPIEDVFSIAGRGTVVTGRIEQGKVNVGDDLEVVGFNHNAKTTCTGVEMFKKLLDYGMAGDNVGALLRGLKREDVERGQV 328
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8586.16706.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Tr-type1.580e-22695.43G domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
Tuf1,8.850e-16279.53mitochondrial translation elongation factor EF-Tu ... [more]
Elongation1.400e-15578.38factor Tu n=44 Tax=root TaxID=1 RepID=A0A059FV41_9... [more]
Elongation5.690e-15579.05factor Tu n=6 Tax=Proteobacteria TaxID=1224 RepID=... [more]
Hypothetical1.770e-15476.35protein n=1 Tax=Skeletonema marinoi TaxID=267567 R... [more]
Elongation7.860e-15478.38factor Tu (Fragment) n=2 Tax=Alphaproteobacteria T... [more]
Elongation2.660e-15379.05factor Tu n=6 Tax=Proteobacteria TaxID=1224 RepID=... [more]
Elongation3.240e-15377.03factor Tu n=2 Tax=Fistulifera solaris TaxID=151956... [more]
Hypothetical3.920e-15377.40protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Translation1.220e-15276.35factor elongation factor ef-tu n=1 Tax=Thalassiosi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8586contigE_fasciculatus_S2_contig8586:447..6253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score633.3
Seed ortholog evalue6.9e-179
Seed eggNOG ortholog2880.D8LDT2
Model size1053
KEGG koko:K02358
Hectar predicted targeting categorymitochondrion
Exons8
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG0050@1,KOG0460@2759
Ec32 ortholog descriptionTuf1, mitochondrial translation elongation factor EF-Tu
Ec32 orthologEc-08_003230.1
Cds size1050
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8586.16706.1prot_E_fasciculatus_S2_contig8586.16706.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8586 447..6250 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842516.266783-CDS-E_fasciculatus_S2_contig8586:446..5961696842516.266783-CDS-E_fasciculatus_S2_contig8586:446..596Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8586 447..596 -
1696842516.2802835-CDS-E_fasciculatus_S2_contig8586:1678..17881696842516.2802835-CDS-E_fasciculatus_S2_contig8586:1678..1788Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8586 1679..1788 -
1696842516.2923865-CDS-E_fasciculatus_S2_contig8586:2170..23331696842516.2923865-CDS-E_fasciculatus_S2_contig8586:2170..2333Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8586 2171..2333 -
1696842516.310121-CDS-E_fasciculatus_S2_contig8586:2845..29351696842516.310121-CDS-E_fasciculatus_S2_contig8586:2845..2935Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8586 2846..2935 -
1696842516.3233926-CDS-E_fasciculatus_S2_contig8586:3318..34061696842516.3233926-CDS-E_fasciculatus_S2_contig8586:3318..3406Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8586 3319..3406 -
1696842516.3320417-CDS-E_fasciculatus_S2_contig8586:4015..41471696842516.3320417-CDS-E_fasciculatus_S2_contig8586:4015..4147Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8586 4016..4147 -
1696842516.3399608-CDS-E_fasciculatus_S2_contig8586:4794..48741696842516.3399608-CDS-E_fasciculatus_S2_contig8586:4794..4874Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8586 4795..4874 -
1696842516.3510735-CDS-E_fasciculatus_S2_contig8586:6013..62501696842516.3510735-CDS-E_fasciculatus_S2_contig8586:6013..6250Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8586 6014..6250 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842516.3588731-UTR-E_fasciculatus_S2_contig8586:6250..62531696842516.3588731-UTR-E_fasciculatus_S2_contig8586:6250..6253Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8586 6251..6253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8586.16706.1

>prot_E_fasciculatus_S2_contig8586.16706.1 ID=prot_E_fasciculatus_S2_contig8586.16706.1|Name=mRNA_E_fasciculatus_S2_contig8586.16706.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=350bp
MALRLAANRASVRARSKCAESFKLSSALRATQRVGPAEPRLSGASAAATA
ELSTFERSKPHVNIGTIGHVDHGKTTLTAAITKVLSDKGLCKARTYTDID
NAPEEKARKITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDG
GILVVSVTDGPMPQTREHILLAHQASQSLVGVPELVVFLNKVDLLSEGDA
ELQELVEMEIRELLSFYKFDGDDIPLVAGSALAAVEGRDKEVGEDAIMEL
MEAVDAHIPTPERALDKPFLMPVEDVFSIAGRGTVVTGRVEQGIVKVGDE
LEISGIGSVVKTTCTGVEMFKKLLSQGQAGDNIGALLRGLKREDVQRGQV
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mRNA from alignment at E_fasciculatus_S2_contig8586:447..6253-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8586.16706.1 ID=mRNA_E_fasciculatus_S2_contig8586.16706.1|Name=mRNA_E_fasciculatus_S2_contig8586.16706.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5807bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8586:447..6253- (Ectocarpus fasciculatus EfasUO2)
AATATGGCGCTACGCCTCGCTGCCAACCGTGCGTCTGTCCGCGCCCGCTC
GAAGTGCGCGGAGTCGTTCAAGCTGAGCAGCGCCCTGCGCGCCACGCAAC
GCGTAGGCCCCGCGGAACCACGATTGTCGGGGGCTTCGGCTGCTGCAACT
GCTGAGCTTTCGACCTTCGAGCGCTCCAAGCCGCACGTGAACATCGGCAC
CATTGGGCACGTTGATCATGGCAAGACTACGCTGACGGCGGTGAGTGCAG
TGCGATGATGGTCCACCGTGTGTCGCAAGTGGGCTTCGGAGTTGGGTTGC
ACCTACCGCCGTGTGGAGCGAACGCGGCGTTGTTGCTGACGAAGCGAGAT
CCCAGGGCCGCTCCCGCAGGCCTGGCCTGGCTGCGTGCTGTGTAAGGCTG
GCCACCTCGTGCCTACTAAGCTCCGATATTAGATGTTTCGAAAAAGCGCC
AAATGGTCATGATCTGTGCCCCTCTTTGCAGCGGCTGTCTTCTTGGTGGG
TTGCACACAACTGCTGTAACTCTGCTTTGCCTCCTGCTGCTGTATGGCCT
TCGACTCGACAGCAGCGCTGAAGGGAAGTCTATGTAGTGAACACCCTCTC
GTCCCGCACGAGGAACATTTGTAGGGAAAGTGGCCAGGAAAACAGCTAAA
ATATGAGAGCCACAGGGGTGGTGTGGTGCTTCTGTGTAGCAGTTAGGGAT
GGGGTTCGTTTCGAACGTGCATGCACCTCGATGTCTCCCTTGCTGCTTTG
TGGTTACTAAAGCGGGTTGGGGTGAGGTGTGTGCCCCGCTGTTATTCGGC
GGGGCATTTTGAACCCTTTGTTGAAACCAAGTTAATCGGCCTACTCCTGC
TTCACACCAACCAGCGTGTTCGCGGTGTCTGGGTGTTGACTACAGATGGG
CGCACAGAACCCAACCAGCAGCAGGGTACTGCGCTGCACCCCTGGGATTG
GATGCGTACGTCTCAATGCACCATGGAGGACGAATGTACCGTCGACCCAG
GGTTTACATACGTGCTGACAGTCGTAAACGTCGCTGAGCATTCAGTAACT
ACTCCGGAGCTGATAGTGTATGAGAATCAACCCTCTAGAGCTGACGGGCT
GGGTGTGACAGCCGTCGCTGAATTAGGTTCCCTCTCCTTGAAGAAGGCGC
CAACGAGAGTCGGCCCTCAAATCGCTTGTGGAACTTCGACTTCATACGTG
GTGCAAATCAGTGAAACGGTTGCTGTAGCGGCCGAATCGAATGAGATGTC
GGAGAGGGAGTCAAAATGTAACACCCGGAGCCTCGTCTTCTTTCGCGCGC
CCGAATCGCCTTCCCTTGTGCGCGTTGCAACGTGGGGGGCGTTGACACGT
GGGACGGGACTGAACTCGTCGATCCGAAGGCAATCACCAAGGTCTTGTCC
GACAAGGGCCTGTGCAAGGCGAGGACCTACACCGACATCGACAACGCCCC
GGAGGAGAAGTGAGTACCCCAGATCGGAAGAGCGTCGTGTAGGGAAAGAG
TGTAGATCTCGGTGGTCGCCGTATCATTAAAAATGNNNNNNNNGCAAGAA
GGGGGTGTAAGAGGGGATGGCGCCCCCCCAAACACAGAAAACCCGGGAGG
AGAAGTGTGACCCCCCCCCCCCCCCCCCAGACTGGACTGGTCGCCCCAAA
GCGATTCGTTCGGCCCAATACGCATGCGGTCTGGTGGATTAAATGTATCA
AGGAGGTCGGGACTTGCTCACCCTCTCTGCGTTGTTTCACCGCTTTTGAT
CCGATGGAAGTACTCCGGTTAGGACTACAACCTTGCAAGCTGAACTATTA
GTAACTCCCCGAGACAGGTCCATGGTTTACGTGCGTAGTCACGCAGAGCG
TGGAGGAAACCACTGAGATGGGGGAACCACCGTGTTTGGTGGAGTATTCA
GATGTTTTTTTGGTTCAGAGAGTTGTCATCATTTGATCATTTGAATTGTT
TTGAAGGTACAAAACAACAAAGTGAGCGGCTCGCCTGCAAAGGCTTGAGC
GCGGCGTCCAGGTAAATTCGGCAATCATTCTGTGAAACATGACACCTTTT
TTTCCCGTCTGGCTGTTCTCCTTTCGTGCCTCTCGTCCCCTCCCCCTCCT
TCCCAGGGCACGCAAAATCACCATCAACACGGCCCACGTAGAGTACGAGA
CCGCGAACCGACACTACGCGCACGTCGACTGCCCCGGGCACGCCGACTAT
GTGAAGAACATGATTACTGGGGCCGCGCAGATGGACGGGTGAGTTCGGCG
CCCCCGGGCTAGAGCTCGTCGATCGCGGTTGTCGACTGGTTGTGGTGGCT
AGTGAAGGGATTGGGTTGCGTGCCTCTGCTGTTATTGTCGGATGGCTCGC
GGCGGGGCCTGGAGGCTGTGCGTACTCGTGGGAAGGTTCGTCGGGGAGCA
GGAAAGTAGTGCTGCGCTTTACCTCTGGTCCCTGCCATGGCATCGGCGCC
GCCTCGTGGTCATGGGGCACGGCTCACCACGCGCGTCACAACGCGTGTCT
GTGTGCCCTGAATGTATGTTGTCGCTGCGTCTGTCTGCTACCGTTCTTAC
CGTTGCCGGCACCATGTTTGCCCTCCTCTCCTGCTGATCATGCAACCCCT
CTGCTGATGGCGTTCGTGCGCTCGCCCCCCCTTTTTTGTTGCGTGTGGAC
GTCGATCCCTTGCTGTCCGACTGTATTCTTCCGAATTCCCGTATTTTGTT
TTCGTAGCCCCCACTTTAAGAAACGGATTTCGGGTGTTGCGTTTTTTTTT
TGCCGCTCTGCCGCTGCTCGTTACAGCTGCCACTATCAACACCACCATGG
GCCATTTCTCCCTTTCCCTTGTCCGCTACTTTCCTCGTACTGTTCAGGGG
CATCTTGGTGGTATCGGTGACGGACGGGCCAATGCCGCAGACGCGGGAGC
ACATCCTTCTTGCGCACCAGGCGAGTCAGTCGCTTGTTCGTTTTGGGGGT
AGGGCGTCATGGTCCAGATTTTCTTTTCTTTTTGTTTTATGTCCCCATCT
GACGTGCTGTTTTCACGAAAAGGAAAATGGTGGCCCTCCGTCGTGTAGGG
TGGAGCTCTGCAACGCGGACAACCCCTTCCACAGGCGTTGGTATAGCATC
GATCGCGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGTGCTGCA
AGGTGCTTGCTGCCGCGTCTTGACCGAGTCCTTCGTCTTACGTCGTCTAT
CACTTGCGACTGTTGCTGCTCCGCTGTGGGGCTGCTGCGTTTGTTTCGTT
TCGTGTCGGGTGTTCCTTCCTCCCCTTCGATCTTGTGCCATCGTCTCGCG
AAATCAATCCACCGAAAGGTTGGCGTGCCGGAGCTGGTGGTGTTCCTCAA
CAAGGTCGACCTTCTTTCCGAGGGGGACGCTGAGCTCCAGGAGTTGGTAG
AGATGGAGGTGAGACACATGATCGTGTGAGGGGGGGTTGACTAGGACGTG
TGAGTAGAGAAGCGAGAGGGAAGGATGTCGCACGCAGGGGGGGCGGGGGG
GTGTTTGTGGTTCCGAACGAGTGCTGAACGGACGGGGAGAGAGGCGTTTG
GTTGAGCATATAGGCTGGATAGATTCGAAGTTTTGTGTCGATGTCGCGGA
GTGCGTGGTGTGCCCGAACTGGAGCAACGTCACGCTTCCGGGAGGGACGA
TCAAACCAACTTGTCTTCGTATCTCATTGCGGAGGGAGAACGATTATTTT
TGGTGTCGGAATTCAGCCACATACCGCTTAGTTGGTCCGTTTCTCCTCTC
CTCTCCTGTGGGAGACGATCTGCAGCAGAGGTACACAGCACACTACGTTT
CTTTGAAGGTGGTTGGTTCGTCCTGTCGGAGGGTGCTATCATATTGGCTT
GTGTTGTTGTTGAGCTTGCGTGCATACCACGTGTGGTTTCTGCCTCGTGC
GGCGTTTTTTGGCCGAACAGATCCGAGAGCTGCTGTCGTTCTACAAGTTC
GACGGCGATGACATCCCGCTGGTGGCCGGCTCCGCGCTCGCGGCGGTGGA
GGGGAGGGACAAGGAGGTCGGGGAGGATGCCATCATGGAGCTCATGGAGG
CCGTGGACGCGCACATCCCCACGCCGGAAAGAGGTGAGTGTGTTTTATCT
CTTGGGAAGCGCGCCGCAGCAGCAGCAGCAGCAGCCTCCTGGTGATGATG
GTCGTAATGGTGGTGGTGAAAATTGGCTGCTTCATCATCACGATCATCTA
TCTCGTCTTCCCTTGTTATGCAGTCCTGTTGATGATTATGGTGATGATGG
GTGTCTTGGCTGCTGCTTCATCATCATCATTACGACCATTCCGTCTTCGC
TCGTTCTTTTTCGTTGGTCCGTCGTTCTCTGTGCTGTGTTGGAAGTGCTG
CGGTCCTCTCGATGGTGATGGTAATGGGTGTGTTGACTGCTTCTTCATCA
TCGTCTGTGCATGCTATTTTACGTCGATCTGTTTATGCTGTGTGTGTGTG
TTATTCTTTTGTCAGCCCTGGACAAGCCGTTCCTGATGCCCGTGGAGGAC
GTGTTCTCCATCGCGGGAAGGGGCACCGTGGTTACGGGAAGGGTGGAGCA
GGGGATCGTCAAAGTGGGCGACGAGGTGCGTAGGGTGGTACAGTATACTA
CTATTAATACAGTGGCAGAAGAATAGAGGTTCCTGTATAGTGCCGTCACG
TGCCCTATATAGAAAAGTCATGGGCACTACTATACCGGACCAGCACTTTT
CAAAGTATTGAAAATGACTTGGAAAACCAATGTGTACAGTGCCCGCCGAA
AAGAGCGGCACTATACCGGGCACCGTCACTAAACACTAAACAGGGACCTC
TACTGCTGTATGCCAGCGTTGGTGTGTAAAGTTTTGTCTCCCACTCACTG
CAAATGCAAATACTTGACGCATCCAACACATCCCCTGCGGCTTGTGGCGT
TATCTTTAGTCTCTCTTTGATTGCACATGAACGTTTTCTATAAAAGGAGG
GCGGTGGTCGTTCAGTGTGGTGGGGTGGAGATAGTACCGGTGGCGTCGAT
CGGTGTTGTTTGTTGCTTGTCTTGATCTGCCAAGTCGTTCCGCTCGGGTA
GGGAGCGCAAAATGCGAGGAGCTGTGCAAACGAACGCCCTTCGAAAACTG
ATCATCATCTTATTGTTGGGCGCCGTTCATGGCTCTATGAAGTTGTGACG
TCGCCACTGCCACCACAGCTACCAGTGGTGCATGTTGCAGCAGTTGCTCG
CCTCTCCTCGTACGGGGATGGATACGTCCATCCAGGACGTTTTGCGTGGT
AGCCAGCGCTTGTTTGTGGATGCACGCCTTCCAAGGTAGCTTGGGGTATG
CACTCCAGCAAGACGAAAGGGTCGAGTTGGTTCGGCGTGACGCTCGCGCT
CTGATCGCGCTGTCAAAGCCCCATTTCTGTTGGGGCGTCAAGTATGAACG
AAAGCTAAGCACAAACATGTGCTTGCAGTAAGTAGCCTACGGCGTAGTCA
GCTGGCCAGCTCTACCGATGCCTACAGAGTAGCATGGGGATCCCCTTTCT
CGAGGGTACAATCTCCCCCACGCCTGCCAAGGACGATAGATTCCCTCTTT
TCACACCAGACGAGAAGCGAGAAGGATTGCAAGCTCCTCGCACACACACC
CACGTCCCACCCACCCCACACCCTCCCTGCCGTCAAAACGCCACCACCAA
CAAACAGCTGGAAATCTCGGGCATCGGCTCTGTGGTGAAGACCACCTGTA
CGGGGGTGGAGATGTTCAAGAAGTTGTTGTCCCAAGGGCAGGCGGGGGAC
AACATCGGGGCGCTGCTGCGAGGGTTGAAGAGAGAAGACGTGCAGCGGGG
GCAGGTA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8586:447..6253-

>mRNA_E_fasciculatus_S2_contig8586.16706.1 ID=mRNA_E_fasciculatus_S2_contig8586.16706.1|Name=mRNA_E_fasciculatus_S2_contig8586.16706.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1050bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8586:447..6253- (Ectocarpus fasciculatus EfasUO2)
ATGGCGCTACGCCTCGCTGCCAACCGTGCGTCTGTCCGCGCCCGCTCGAA
GTGCGCGGAGTCGTTCAAGCTGAGCAGCGCCCTGCGCGCCACGCAACGCG
TAGGCCCCGCGGAACCACGATTGTCGGGGGCTTCGGCTGCTGCAACTGCT
GAGCTTTCGACCTTCGAGCGCTCCAAGCCGCACGTGAACATCGGCACCAT
TGGGCACGTTGATCATGGCAAGACTACGCTGACGGCGGCAATCACCAAGG
TCTTGTCCGACAAGGGCCTGTGCAAGGCGAGGACCTACACCGACATCGAC
AACGCCCCGGAGGAGAAGGCACGCAAAATCACCATCAACACGGCCCACGT
AGAGTACGAGACCGCGAACCGACACTACGCGCACGTCGACTGCCCCGGGC
ACGCCGACTATGTGAAGAACATGATTACTGGGGCCGCGCAGATGGACGGG
GGCATCTTGGTGGTATCGGTGACGGACGGGCCAATGCCGCAGACGCGGGA
GCACATCCTTCTTGCGCACCAGGCGAGTCAGTCGCTTGTTGGCGTGCCGG
AGCTGGTGGTGTTCCTCAACAAGGTCGACCTTCTTTCCGAGGGGGACGCT
GAGCTCCAGGAGTTGGTAGAGATGGAGATCCGAGAGCTGCTGTCGTTCTA
CAAGTTCGACGGCGATGACATCCCGCTGGTGGCCGGCTCCGCGCTCGCGG
CGGTGGAGGGGAGGGACAAGGAGGTCGGGGAGGATGCCATCATGGAGCTC
ATGGAGGCCGTGGACGCGCACATCCCCACGCCGGAAAGAGCCCTGGACAA
GCCGTTCCTGATGCCCGTGGAGGACGTGTTCTCCATCGCGGGAAGGGGCA
CCGTGGTTACGGGAAGGGTGGAGCAGGGGATCGTCAAAGTGGGCGACGAG
CTGGAAATCTCGGGCATCGGCTCTGTGGTGAAGACCACCTGTACGGGGGT
GGAGATGTTCAAGAAGTTGTTGTCCCAAGGGCAGGCGGGGGACAACATCG
GGGCGCTGCTGCGAGGGTTGAAGAGAGAAGACGTGCAGCGGGGGCAGGTA
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