mRNA_E_fasciculatus_S2_contig8542.16670.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8542.16670.1
Unique NamemRNA_E_fasciculatus_S2_contig8542.16670.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8542.16670.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.800e-23
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = -2 
Query:  234 EGRVLGSLRADVWFVLDGDDSGAWYWTREELSDLLNSARLRLIEGDGD 377
            EGRVLGSLRADVWFVLDGDDSGAWYWTREELSDLLNSARLRLIEGDGD
Sbjct: 7777 EGRVLGSLRADVWFVLDGDDSGAWYWTREELSDLLNSARLRLIEGDGD 7824
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8542.16670.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 4.690e-16
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = -2 
Query:  267 EGRVLGSLRADVWFVLDGDDSGAWYWTREELSDLLNS 377
            EGRVLGSLRADVWFVLDGDDSGAWYWTREELSDLLNS
Sbjct: 7175 EGRVLGSLRADVWFVLDGDDSGAWYWTREELSDLLNS 7211
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8542.16670.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.800e-23100.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.690e-16100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8542contigE_fasciculatus_S2_contig8542:4003..4382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size382
Hectar predicted targeting categoryother localisation
Exons1
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842512.5536196-CDS-E_fasciculatus_S2_contig8542:4002..43801696842512.5536196-CDS-E_fasciculatus_S2_contig8542:4002..4380Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8542 4003..4380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8542.16670.1prot_E_fasciculatus_S2_contig8542.16670.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8542 4003..4380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8542.16670.1

>prot_E_fasciculatus_S2_contig8542.16670.1 ID=prot_E_fasciculatus_S2_contig8542.16670.1|Name=mRNA_E_fasciculatus_S2_contig8542.16670.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=126bp
TSTVGAAAAVESSAVPAAPVDATFSSSCDSLVDTGGVATSAAAAAAAVPS
SPCEGAAGAPAAAAVSSEDPAPAAAAAVSPSPSINLRRALLSRSDSSSRV
QYHAPESSPSSTNQTSARRDPSTLPS
back to top

mRNA from alignment at E_fasciculatus_S2_contig8542:4003..4382+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8542.16670.1 ID=mRNA_E_fasciculatus_S2_contig8542.16670.1|Name=mRNA_E_fasciculatus_S2_contig8542.16670.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=380bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8542:4003..4382+ (Ectocarpus fasciculatus EfasUO2)
ACCTCCACTGTTGGTGCCGCTGCCGCGGTGGAATCGTCTGCCGTACCAGC
GGCGCCGGTTGATGCGACCTTTTCTTCTTCGTGCGACTCACTCGTAGATA
CCGGTGGCGTCGCCACATCAGCAGCTGCTGCAGCGGCAGCAGTGCCGTCG
TCTCCTTGCGAAGGCGCGGCGGGGGCACCGGCGGCGGCGGCGGTCTCGTC
CGAAGACCCAGCACCAGCAGCGGCGGCGGCGGTGTCTCCGTCCCCCTCGA
TCAACCTCAGGCGGGCGCTGTTGAGCAGGTCGGACAGCTCCTCCCGTGTC
CAGTACCACGCACCGGAGTCATCCCCATCCAGCACGAACCAAACGTCCGC
CCGCAGGGACCCCAGCACCCTCCCCTCCCC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8542:4003..4382+

>mRNA_E_fasciculatus_S2_contig8542.16670.1 ID=mRNA_E_fasciculatus_S2_contig8542.16670.1|Name=mRNA_E_fasciculatus_S2_contig8542.16670.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=378bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8542:4003..4382+ (Ectocarpus fasciculatus EfasUO2)
ACCTCCACTGTTGGTGCCGCTGCCGCGGTGGAATCGTCTGCCGTACCAGC
GGCGCCGGTTGATGCGACCTTTTCTTCTTCGTGCGACTCACTCGTAGATA
CCGGTGGCGTCGCCACATCAGCAGCTGCTGCAGCGGCAGCAGTGCCGTCG
TCTCCTTGCGAAGGCGCGGCGGGGGCACCGGCGGCGGCGGCGGTCTCGTC
CGAAGACCCAGCACCAGCAGCGGCGGCGGCGGTGTCTCCGTCCCCCTCGA
TCAACCTCAGGCGGGCGCTGTTGAGCAGGTCGGACAGCTCCTCCCGTGTC
CAGTACCACGCACCGGAGTCATCCCCATCCAGCACGAACCAAACGTCCGC
CCGCAGGGACCCCAGCACCCTCCCCTCC
back to top