mRNA_E_fasciculatus_S2_contig8526.16659.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig8526.16659.1
Unique Name	mRNA_E_fasciculatus_S2_contig8526.16659.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8526.16659.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT7_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 7.430e-66
Identity = 140/197 (71.07%), Postives = 155/197 (78.68%), Query Frame = 3

Query:  381 QSAEGSRAKSRRASTGDNGSEKSLASSSSHSGGATXXXXXXXXXXXXXXXXTTFRTLGKRSVQARHNSEERHETGVGGVSTFNSEMSAQDLFDAMDTALVPNGAKAELLGLLLQAISPDVANMLGERSTKK--FGPGEKSARGVCANVMAVFAYGFIGPARMKFSNGGPTNPATNPFTALGYHAWPGGRQDLKKFPS 965
            QSA   +AKSRR STG NG+E S AS +SH     XXXXXXXXXXXXXXXX  FRTLGKRSVQ RHNSEE HETG+G  ST N EMS Q+LFD +DTALVP  AKA LLGLLLQ ISPDVA MLG  S+KK   GPGEK+ARGV ANVM+V+AYGF+GPARM+FS GGPT+  TNPF ALG HAWPG RQ+L  FP+
Sbjct:   11 QSAGRHQAKSRRVSTGINGNESS-ASGTSHXXXXXXXXXXXXXXXXXXXXXXXFRTLGKRSVQERHNSEECHETGIGRESTINMEMSGQNLFDTLDTALVPKAAKAALLGLLLQLISPDVATMLGGESSKKTTVGPGEKTARGVAANVMSVYAYGFVGPARMQFSGGGPTSALTNPFLALGSHAWPGARQNLNTFPA 206

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BLAST of mRNA_E_fasciculatus_S2_contig8526.16659.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2D5_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 5.630e-64
Identity = 107/155 (69.03%), Postives = 119/155 (76.77%), Query Frame = 3

Query:  561 SVQARHNSEERHETGVGGVSTFNSEMSAQDLFDAMDTALVPNGAKAELLGLLLQAISPDVANMLGERSTKK-FGPGEKSARGVCANVMAVFAYGFIGPARMKFSNGGPTNPATNPFTALGYHAWPGGRQDLKKFPSDAGFPCCWCANLSVSNPVS 1022
            S   RH+ EE HETG+GGVST N EMS ++LFDA+DTALVP  AK  LLGLLLQ ISPDVANMLG  S+KK  G  EK+ARGV ANVM+V+AYGF+GPARMKFS GGPTN  TNPF ALG HAWPG RQ+L  FP D GF  CWC  L  SNPV+
Sbjct:  253 STSERHHREECHETGIGGVSTINMEMSGRNLFDALDTALVPKAAKTALLGLLLQLISPDVANMLGGESSKKTVGSDEKTARGVAANVMSVYAYGFVGPARMKFSGGGPTNALTNPFLALGSHAWPGARQNLNTFPGDPGFRSCWCTTLRFSNPVA 407

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BLAST of mRNA_E_fasciculatus_S2_contig8526.16659.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R4_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 7.010e-64
Identity = 139/189 (73.54%), Postives = 152/189 (80.42%), Query Frame = 3

Query:  402 AKSRRASTGDNGSEKSLASSSSHSGGATXXXXXXXXXXXXXXXXTTFRTLGKRSVQARHNSEERHETGVGGVSTFNSEMSAQDLFDAMDTALVPNGAKAELLGLLLQAISPDVANMLGERSTKK-FGPGEKSARGVCANVMAVFAYGFIGPARMKFSNGGPTNPATNPFTALGYHAWPGGRQDLKKFPS 965
            AKSRR STG NG+E S A  +SHSG   XXXXXXXXXXXXXXXX   RTLGKRSVQ RHNSEE HETG+G  ST N EMS Q+LFDA+DTALVP  AKA LLGLLLQ ISPDVANMLG  S+KK  GPGEK+ARGV A VM+V+AYGF+GPARM+FS GGPTN  TNPF ALG HAWPG RQ+L  FP+
Sbjct:   83 AKSRRVSTGINGNESS-AFGTSHSGXXXXXXXXXXXXXXXXXXXXXXRTLGKRSVQERHNSEECHETGIGRESTINMEMSGQNLFDALDTALVPKAAKAALLGLLLQLISPDVANMLGGESSKKTVGPGEKTARGVTAKVMSVYAYGFVGPARMQFSGGGPTNALTNPFLALGSHAWPGARQNLNTFPA 270

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BLAST of mRNA_E_fasciculatus_S2_contig8526.16659.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH35_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 5.790e-45
Identity = 83/112 (74.11%), Postives = 93/112 (83.04%), Query Frame = 3

Query:  633 EMSAQDLFDAMDTALVPNGAKAELLGLLLQAISPDVANMLGERSTKK-FGPGEKSARGVCANVMAVFAYGFIGPARMKFSNGGPTNPATNPFTALGYHAWPGGRQDLKKFPS 965
            EMS Q+LFDA+DTALVP  AKA LLGLLLQ ISPDVANMLG  S+KK  GPGEK+ARGV ANVM+V+AYGF+GPARM+FS GGPTN  TNPF ALG HAWP  RQ+L  FP+
Sbjct:    2 EMSGQNLFDALDTALVPKAAKAALLGLLLQLISPDVANMLGGESSKKTVGPGEKTARGVAANVMSVYAYGFVGPARMQFSGGGPTNALTNPFLALGPHAWPRARQNLNTFPA 113

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8526.16659.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW98_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 8.160e-26
Identity = 55/68 (80.88%), Postives = 58/68 (85.29%), Query Frame = 3

Query:  537 TFRTLGKRSVQARHNSEERHETGVGGVSTFNSEMSAQDLFDAMDTALVPNGAKAELLGLLLQAISPDV 740
            TFRTLGKRSVQ RHNSEE HETG+GG ST N EMS Q+LFDA+DTALVP  AKA LLGLLLQ ISPDV
Sbjct:   27 TFRTLGKRSVQERHNSEECHETGIGGKSTINMEMSGQNLFDALDTALVPKAAKAALLGLLLQLISPDV 94

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8526.16659.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR20_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.090e-24
Identity = 54/76 (71.05%), Postives = 63/76 (82.89%), Query Frame = 3

Query:  741 ANMLGERSTKK-FGPGEKSARGVCANVMAVFAYGFIGPARMKFSNGGPTNPATNPFTALGYHAWPGGRQDLKKFPS 965
            ANMLG  S+KK  GPGEK+ARGV ANVM+V+AYGF+GPARM+FS GGPT+  TNPF ALG HAWPG RQ+L  FP+
Sbjct:   45 ANMLGGESSKKTVGPGEKTARGVAANVMSVYAYGFVGPARMQFSGGGPTSALTNPFLALGSHAWPGARQNLNTFPA 120

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8526.16659.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W4_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 9.710e-21
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 1

Query:    1 MRTTLDVRVPRSAIGGG-VRQSDFSRRNSTGGPGRGASSARGRSSSVGGRTGQPSLLAGRGYGR 189
            MRT LDVRVPRSAIGGG VR+SDF+RRNSTGGPGRGASSARGR SSVGGRTGQPSLLAGRG+ R
Sbjct:  129 MRTILDVRVPRSAIGGGGVRRSDFARRNSTGGPGRGASSARGRPSSVGGRTGQPSLLAGRGHSR 192

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8526.16659.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ7_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 6.450e-20
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 1

Query:    1 MRTTLDVRVPRSAIGGG-VRQSDFSRRNSTGGPGRGASSARGRSSSVGGRTGQPSLLAGRGYGR 189
            MRTTLDVRVPRSAIGGG +R+SDF+RRNSTGGPGRGASSARGR SSVGGRTGQPSLLAGRG+ R
Sbjct:  129 MRTTLDVRVPRSAIGGGGIRRSDFARRNSTGGPGRGASSARGRPSSVGGRTGQPSLLAGRGHSR 192

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8526.16659.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNE2_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.020e-18
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 3

Query:  741 ANMLGERSTKK--FGPGEKSARGVCANVMAVFAYGFIGPARMKFSNGGPTN-PATNPFTALG 917
            ANMLG  S+KK   GPGEK+ARGV ANVM+V+AYGF+GPARM+FS GGP N P TNPF ALG
Sbjct:   25 ANMLGGESSKKTAVGPGEKTARGVAANVMSVYAYGFVGPARMQFSGGGPANAPLTNPFLALG 86

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8526.16659.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF69_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.950e-13
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 3

Query:  753 GERSTKKFGPGEKSARGVCANVMAVFAYGFIGPARMKFSNGGPT 884
            GE S K  GPGEK+ARGV ANVM+V+AYGF+GPARM+FS GGPT
Sbjct:    4 GESSKKTVGPGEKTARGVAANVMSVYAYGFVGPARMQFSGGGPT 47

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8526.16659.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig8526.16659.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 12


Match Name	E-value	Identity	Description
Uncharacterized	7.430e-66	71.07	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	5.630e-64	69.03	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	7.010e-64	73.54	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	5.790e-45	74.11	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	8.160e-26	80.88	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	1.090e-24	71.05	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	9.710e-21	89.06	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	6.450e-20	89.06	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	8.020e-18	72.58	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	4.950e-13	75.00	protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8526	contig	E_fasciculatus_S2_contig8526:4309..5981 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Stop	1
Start	1
Model size	1022
Hectar predicted targeting category	other localisation
Exons	2
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-06_011050.1
Cds size	510

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842511.7011395-UTR-E_fasciculatus_S2_contig8526:4308..4644	1696842511.7011395-UTR-E_fasciculatus_S2_contig8526:4308..4644	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig8526 4309..4644 +
1696842511.7350698-UTR-E_fasciculatus_S2_contig8526:5805..5981	1696842511.7350698-UTR-E_fasciculatus_S2_contig8526:5805..5981	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig8526 5806..5981 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842511.7138338-CDS-E_fasciculatus_S2_contig8526:4644..5048	1696842511.7138338-CDS-E_fasciculatus_S2_contig8526:4644..5048	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8526 4645..5048 +
1696842511.7246-CDS-E_fasciculatus_S2_contig8526:5699..5805	1696842511.7246-CDS-E_fasciculatus_S2_contig8526:5699..5805	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8526 5700..5805 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8526.16659.1	prot_E_fasciculatus_S2_contig8526.16659.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig8526 4645..5805 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig8526:4309..5981+
coding sequence from alignment at E_fasciculatus_S2_contig8526:4309..5981+

protein sequence of mRNA_E_fasciculatus_S2_contig8526.16659.1

>prot_E_fasciculatus_S2_contig8526.16659.1 ID=prot_E_fasciculatus_S2_contig8526.16659.1|Name=mRNA_E_fasciculatus_S2_contig8526.16659.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=170bp
MVMVAVQRPAVRHRVRAPKEAGLNPDVRRLATTAAKSPSPHRHHTVVVRR
PVVRRAVVRLRPGRPRRPSAPWANGLFRRATTARNATKRALAVSPPSTRR
CPHKTSSTRWTLHWCPTARRPSCWAFSCKPSARTWPTCSASAPRRNLDPA
RSLLEAFVLTSWLSLRMDS*

mRNA from alignment at E_fasciculatus_S2_contig8526:4309..5981+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig8526.16659.1 ID=mRNA_E_fasciculatus_S2_contig8526.16659.1|Name=mRNA_E_fasciculatus_S2_contig8526.16659.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1673bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8526:4309..5981+ (Ectocarpus fasciculatus EfasUO2)
ATGCGCACAACCCTTGACGTTCGCGTCCCGCGCTCGGCGATCGGCGGAGG
TGTCCGCCAGTCCGATTTTTCTCGCCGCAATTCCACCGGTGGCCCTGGCC
GCGGAGCTTCGTCCGCACGCGGCCGCTCATCATCCGTTGGCGGCCGCACT
GGTCAACCCAGTCTTCTAGCCGGCCGCGGATACGGCAGGGACGGTGGCGC
AGTCGGAAGGTCTGGGGCTGGTGCTTCAGACGGTCCGAAGGTGACCGCCC
TGCTCAATCCGGTGTAGTCCGCGGGCGCGGCTCTGGCAGTGCCTCGGGCG
GTACCACCTACGGCCGGTCTTCATCTGGTTCTTCGGATGGTGATGGTGGC
GGTTCAACGACCAGCGGTGCGTCATCGGGTCAGAGCGCCGAAGGAAGCCG
GGCTAAATCCAGACGTGCGTCGACTGGCGACAACGGCAGCGAAAAGTCCC
TCGCCTCATCGTCATCACACAGTGGTGGTGCGACGTCCGGTGGTGCGGCG
GGCGGTGGTTCGGCTTCGACCGGGGCGACCTCGACGACCTTCCGCACCCT
GGGCAAACGGTCTGTTCAGGCGCGCCACAACAGCGAGGAACGCCACGAAA
CGGGCGTTGGCGGTGTCTCCACCTTCAACTCGGAGATGTCCGCACAAGAC
CTCTTCGACGCGATGGACACTGCACTGGTGCCCAACGGCGCGAAGGCCGA
GCTGTTGGGCCTTCTCCTGCAAGCCATCAGCCCGGACGTGGTGAGTTGTT
TGTGTATCATGGGACGAAGAGTAGTGAAACGTCCTCTCTTGTTTTCTTGT
TTTGTTTCTTGTTGGAGTGGAAGTGGACCATGCAGGTGTCGCTGGTGGAA
GCACCACCCAAATACTTTTTGCGTATCTGTGAGGAATGCGTGGTGTTTTT
TGTCACCGGCGGCAAGCCTAGTGGCAGTGGTTTGGATCGGGCGACTCTTT
AATAGTTGCGTTGCCTTTGCATCGGATTTAGAGCAGGAGGCACGGGCTCT
GTGTCCATTGTTTGACGGGGCTTTTTTTCTCTCTCTCTAGGATTTTTTTC
CCGGTAAGTGCCGATTTTTCATTTCGCCGTTTCCTCTCGCGTTTGATGTC
CATCCTGGCTTCTCGATATGTGTGTACGCCTTCTGGGGGTGGTTGGCCTG
TGCCCACGGAAGGCGTCTACGTTACTCGCACCGGTACAGACAAAACAAGA
AGGCGATCCCCGCGTTTGCCCATGCTTCCTCGGCAACGACTCATCACATG
CCAGCCAAACTTCAAACTGTATTCGAGAACCACTTTCGGTTCGTTCATGT
TCCTGTGTTTTTTCTTGTCCACCTACAACACAGTTTGCGCATCGCCTGTA
ACATCCGGAGGCATTCGCGCGCTGCCTTTGCTCGAAAACAGGCCAACATG
CTCGGCGAGCGCTCCACGAAGAAATTTGGACCCGGCGAGAAGTCTGCTCG
AGGCGTTTGTGCTAACGTCATGGCTGTCTTTGCGTATGGATTCATAGGAC
CCGCCCGGATGAAGTTCTCTAACGGGGGGCCCACAAACCCTGCAACGAAC
CCTTTCACAGCGTTGGGTTACCACGCGTGGCCGGGAGGGAGGCAAGACCT
GAAGAAGTTCCCCAGTGATGCTGGTTTCCCCTGTTGTTGGTGTGCTAACC
TGAGCGTTAGCAATCCTGTTAGC

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8526:4309..5981+

>mRNA_E_fasciculatus_S2_contig8526.16659.1 ID=mRNA_E_fasciculatus_S2_contig8526.16659.1|Name=mRNA_E_fasciculatus_S2_contig8526.16659.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=510bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8526:4309..5981+ (Ectocarpus fasciculatus EfasUO2)
ATGGTGATGGTGGCGGTTCAACGACCAGCGGTGCGTCATCGGGTCAGAGC
GCCGAAGGAAGCCGGGCTAAATCCAGACGTGCGTCGACTGGCGACAACGG
CAGCGAAAAGTCCCTCGCCTCATCGTCATCACACAGTGGTGGTGCGACGT
CCGGTGGTGCGGCGGGCGGTGGTTCGGCTTCGACCGGGGCGACCTCGACG
ACCTTCCGCACCCTGGGCAAACGGTCTGTTCAGGCGCGCCACAACAGCGA
GGAACGCCACGAAACGGGCGTTGGCGGTGTCTCCACCTTCAACTCGGAGA
TGTCCGCACAAGACCTCTTCGACGCGATGGACACTGCACTGGTGCCCAAC
GGCGCGAAGGCCGAGCTGTTGGGCCTTCTCCTGCAAGCCATCAGCCCGGA
CGTGGCCAACATGCTCGGCGAGCGCTCCACGAAGAAATTTGGACCCGGCG
AGAAGTCTGCTCGAGGCGTTTGTGCTAACGTCATGGCTGTCTTTGCGTAT
GGATTCATAG