mRNA_E_fasciculatus_S2_contig8450.16581.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8450.16581.1
Unique NamemRNA_E_fasciculatus_S2_contig8450.16581.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8450.16581.1 vs.
Match: Amine (oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG87_ECTSI)

HSP 1 Score: 458 bits (1179), Expect = 7.360e-159
Identity = 223/227 (98.24%), Postives = 224/227 (98.68%), Query Frame = 1 
Query:    1 QVISPIFQNMPRLPSPMGTFLYPSFLRLPWFDRLTALGLLASVVDWDNTPEAWRKYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGALGMLYFFILAHQADFDVKWCRGTTGEMIFKPWVQRIEENGAKVLVEKRVSDVEVCPDTGSVVSVSCGDESFPCDAVVSAVGINGVKGIVRAAPELSKLPFFSKMMNLRSVDALAVRLYLDRRVRIPYQ 681
            +VISPIFQNMPRLPSPMGTFLYPSFLRLPWFDRLTALGLLASVVDWDNTPEAWRKYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGALGMLYFFILAHQADFDVKWCRGTTGEMIFKPWVQRIEENGAKVLVEKRVSDVEVCPDTG VVSVSCG ESFPCDAVVSAVGINGVKGIVRAAP LSKLPFFSKMMNLRSVDALAVRLYLDRRVRIPYQ
Sbjct:  115 EVISPIFQNMPRLPSPMGTFLYPSFLRLPWFDRLTALGLLASVVDWDNTPEAWRKYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGALGMLYFFILAHQADFDVKWCRGTTGEMIFKPWVQRIEENGAKVLVEKRVSDVEVCPDTGRVVSVSCGGESFPCDAVVSAVGINGVKGIVRAAPGLSKLPFFSKMMNLRSVDALAVRLYLDRRVRIPYQ 341
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8450.16581.1 vs.
Match: Amino_oxidase (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI6_9PHAE)

HSP 1 Score: 450 bits (1158), Expect = 1.280e-154
Identity = 218/227 (96.04%), Postives = 223/227 (98.24%), Query Frame = 1 
Query:    1 QVISPIFQNMPRLPSPMGTFLYPSFLRLPWFDRLTALGLLASVVDWDNTPEAWRKYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGALGMLYFFILAHQADFDVKWCRGTTGEMIFKPWVQRIEENGAKVLVEKRVSDVEVCPDTGSVVSVSCGDESFPCDAVVSAVGINGVKGIVRAAPELSKLPFFSKMMNLRSVDALAVRLYLDRRVRIPYQ 681
            +VISPIFQNMPRLPSP+GTFLYPSFLRLPWFDRLTALGLLASVVDWDNTPEAWRKYDKYTARELFRMMGCS+RLYRDAFEPMLLVGLFAPGEQCSAAGALGMLYFFILAHQADFDVKWCRGTTGEMIFKPWVQRIEENGAKVLVEKRVSDVEVCPDTG VVSV+CG ESFPCDAVVSAVGINGVKGIVRAA  LS+LPFFSKMMNLRSVDALAVRLYLDRRVRIPYQ
Sbjct:  179 EVISPIFQNMPRLPSPLGTFLYPSFLRLPWFDRLTALGLLASVVDWDNTPEAWRKYDKYTARELFRMMGCSDRLYRDAFEPMLLVGLFAPGEQCSAAGALGMLYFFILAHQADFDVKWCRGTTGEMIFKPWVQRIEENGAKVLVEKRVSDVEVCPDTGRVVSVTCGGESFPCDAVVSAVGINGVKGIVRAARGLSRLPFFSKMMNLRSVDALAVRLYLDRRVRIPYQ 405
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8450.16581.1 vs.
Match: FAD-dependent (oxidoreductase n=1 Tax=Geminocystis herdmanii TaxID=669359 RepID=UPI000349D2CD)

HSP 1 Score: 298 bits (764), Expect = 3.180e-96
Identity = 140/222 (63.06%), Postives = 172/222 (77.48%), Query Frame = 1 
Query:   10 SPIFQNMPRLPSPMGTFLYPSFLRLPWFDRLTALGLLASVVDWDNTPEAWRKYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGALGMLYFFILAHQADFDVKWCRGTTGEMIFKPWVQRIEENGAKVLVEKRVSDVEVCPDTGSVVSVSCGDESFPCDAVVSAVGINGVKGIVRAAPELSKLPFFSKMMNLRSVDALAVRLYLDRRVRIP 675
            SPIFQ  P LP+P+GTFLYP F RLPW DR +AL L+ +++D+DN+ EAW +YDK TARELF+  G SERLY+D+FEPMLLVGLFAPGEQCSAA ALGMLY+FILAHQ +FDV WCRGT GEMIF+PW+++IEE G KVL  KRV+D+ V    G   +V CG+E F  +AV+S V I+G+K IV  +P LSK   F  + NLRS+D LAVRL+ DRR+ IP
Sbjct:   98 SPIFQEKPLLPTPLGTFLYPDFYRLPWLDRASALPLMYALIDFDNSEEAWERYDKVTARELFKQYGVSERLYKDSFEPMLLVGLFAPGEQCSAAAALGMLYYFILAHQPNFDVMWCRGTVGEMIFQPWIEKIEELGGKVLTNKRVTDI-VIDTEGKATAVVCGEEVFEAEAVISGVSISGIKKIVSNSPNLSKYQEFRNLQNLRSIDVLAVRLWFDRRINIP 318
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8450.16581.1 vs.
Match: Amine (oxidase n=2 Tax=Pseudanabaena TaxID=1152 RepID=A0A2W4VRS4_9CYAN)

HSP 1 Score: 298 bits (763), Expect = 4.500e-96
Identity = 146/225 (64.89%), Postives = 177/225 (78.67%), Query Frame = 1 
Query:    1 QVISPIFQNMPRLPSPMGTFLYPSFLRLPWFDRLTALGLLASVVDWDNTPEAWRKYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGALGMLYFFILAHQADFDVKWCRGTTGEMIFKPWVQRIEENGAKVLVEKRVSDVEVCPDTGSVVSVSCGDESFPCDAVVSAVGINGVKGIVRAAPELSKLPFFSKMMNLRSVDALAVRLYLDRRVRIP 675
            +V SPIFQ++PRLPSP+GTF Y  F RLP  DRL+AL L+ +V+D+DN+ EAW++YD  TARELFR  G SERLYR++FEPMLLVGLFAPGEQCSAA ALGMLY+FILAHQADFDV WCRGT GE IFKPW  RI + G K+L  +RVSDV V  +TG V SV CGDESF  DAV+ AVGI+G++ IV  +P L K   F  +MNL ++D LAVRL+ DR+++IP
Sbjct:   95 EVESPIFQDLPRLPSPLGTFAYTQFKRLPLSDRLSALPLMYAVIDFDNSDEAWKRYDGMTARELFRQYGVSERLYRESFEPMLLVGLFAPGEQCSAAAALGMLYYFILAHQADFDVVWCRGTVGEKIFKPWCDRITDLGGKILTNRRVSDVCV-DETGKVTSVVCGDESFDADAVIFAVGISGMQKIVANSPTLQKRREFRNLMNLGAIDVLAVRLWFDRKIQIP 318
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8450.16581.1 vs.
Match: FAD-dependent (oxidoreductase n=1 Tax=Synechococcales cyanobacterium C42_A2020_086 TaxID=2774344 RepID=UPI0019DDC8A4)

HSP 1 Score: 295 bits (754), Expect = 1.080e-94
Identity = 137/225 (60.89%), Postives = 181/225 (80.44%), Query Frame = 1 
Query:    1 QVISPIFQNMPRLPSPMGTFLYPSFLRLPWFDRLTALGLLASVVDWDNTPEAWRKYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGALGMLYFFILAHQADFDVKWCRGTTGEMIFKPWVQRIEENGAKVLVEKRVSDVEVCPDTGSVVSVSCGDESFPCDAVVSAVGINGVKGIVRAAPELSKLPFFSKMMNLRSVDALAVRLYLDRRVRIP 675
            +V SPIFQ+ PRLP+P+GTFLYP+F RLP  DRL+AL LL +VVD+DN+ EAWR+YD  TARELF+  G S RLYR++FEPMLLVGLFAPGEQCSAA ALGMLY+FILAHQ +FDV WCRGT GE IF+PW+++IE+ G KV  ++R++DV+V  ++G+  +V CG+E+F  DAV+ AVG+ G++ IV ++PEL + P F  +MNL +VD +A RL+ DR+V +P
Sbjct:   97 EVESPIFQDQPRLPTPLGTFLYPNFRRLPLIDRLSALPLLYAVVDFDNSDEAWRRYDSVTARELFKQFGVSARLYRESFEPMLLVGLFAPGEQCSAAAALGMLYYFILAHQPNFDVVWCRGTVGERIFRPWLEQIEQAGGKVFTQRRMTDVQV-DESGTATAVLCGEEAFAADAVILAVGVTGMQKIVSSSPELHRRPEFCNLMNLGAVDVVATRLWFDRKVSVP 320
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8450.16581.1 vs.
Match: FAD-dependent (oxidoreductase n=1 Tax=Myxosarcina sp. GI1 TaxID=1541065 RepID=UPI00055A958E)

HSP 1 Score: 291 bits (746), Expect = 1.540e-93
Identity = 139/225 (61.78%), Postives = 170/225 (75.56%), Query Frame = 1 
Query:    1 QVISPIFQNMPRLPSPMGTFLYPSFLRLPWFDRLTALGLLASVVDWDNTPEAWRKYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGALGMLYFFILAHQADFDVKWCRGTTGEMIFKPWVQRIEENGAKVLVEKRVSDVEVCPDTGSVVSVSCGDESFPCDAVVSAVGINGVKGIVRAAPELSKLPFFSKMMNLRSVDALAVRLYLDRRVRIP 675
            +V SPIFQN PRLPSP+GTFLY  F RLP  DRL+AL LL +V+D+DN+ EAW++YDK TARELF+  G S RLYR+AFEPMLLVGLFAPGEQCSAA ALGMLY+FILAHQ DFDV WCRGT GE IFKPW++ IE++G KVL +KRVSD+ V  D G    V C  E F  DAV+SAV ++G+K IV ++  L   P F  +  L+ +D LA RL+ DR++ +P
Sbjct:   94 EVESPIFQNEPRLPSPLGTFLYTRFKRLPLSDRLSALPLLYAVIDFDNSDEAWQRYDKVTARELFKQFGVSARLYREAFEPMLLVGLFAPGEQCSAAAALGMLYYFILAHQPDFDVVWCRGTVGEQIFKPWIESIEKSGGKVLTDKRVSDI-VIDDVGKATGVKCDSEFFAADAVISAVSVSGIKKIVASSTSLKNHPQFRNLAELKGIDVLATRLWFDRQIEVP 317
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8450.16581.1 vs.
Match: Amine (oxidase n=1 Tax=Aliterella atlantica CENA595 TaxID=1618023 RepID=A0A0D9A0U5_9CYAN)

HSP 1 Score: 291 bits (746), Expect = 1.720e-93
Identity = 140/225 (62.22%), Postives = 175/225 (77.78%), Query Frame = 1 
Query:    1 QVISPIFQNMPRLPSPMGTFLYPSFLRLPWFDRLTALGLLASVVDWDNTPEAWRKYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGALGMLYFFILAHQADFDVKWCRGTTGEMIFKPWVQRIEENGAKVLVEKRVSDVEVCPDTGSVVSVSCGDESFPCDAVVSAVGINGVKGIVRAAPELSKLPFFSKMMNLRSVDALAVRLYLDRRVRIP 675
            +V SPIFQ++P+LP+P+GTFLY  F RLP  DRL+AL LL +++D+DN+ EAWR+YD  TARELF+  G S RLYRD+FEPMLLVGLFAPGEQCSAA ALGMLY+FILAHQ +FDV WCRGT GE IF+PWVQRIE+ G K+L  +RVSDV +  DTG V  V CGD +F  DAV+ AVG++G++ IV  +P L K   F  +MNL +VD +A RL+ DR++ IP
Sbjct:   98 EVESPIFQDLPQLPTPLGTFLYTQFKRLPLIDRLSALPLLYALLDFDNSDEAWRRYDSVTARELFKDFGVSARLYRDSFEPMLLVGLFAPGEQCSAAAALGMLYYFILAHQPNFDVVWCRGTVGETIFRPWVQRIEQAGGKLLANQRVSDV-IVSDTGKVTGVVCGDRTFEADAVIFAVGVSGMQKIVSNSPNLQKHQQFRDLMNLNAVDVVATRLWCDRKINIP 321
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8450.16581.1 vs.
Match: Amine (oxidase (Fragment) n=1 Tax=filamentous cyanobacterium Phorm 46 TaxID=2107705 RepID=A0A2T1CAM5_9CYAN)

HSP 1 Score: 286 bits (733), Expect = 1.880e-93
Identity = 138/225 (61.33%), Postives = 172/225 (76.44%), Query Frame = 1 
Query:    1 QVISPIFQNMPRLPSPMGTFLYPSFLRLPWFDRLTALGLLASVVDWDNTPEAWRKYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGALGMLYFFILAHQADFDVKWCRGTTGEMIFKPWVQRIEENGAKVLVEKRVSDVEVCPDTGSVVSVSCGDESFPCDAVVSAVGINGVKGIVRAAPELSKLPFFSKMMNLRSVDALAVRLYLDRRVRIP 675
            +V SPIFQ+ PRLP+P+GTFLY  F RLP  DRL+AL LL +V+D+DN+ EAWR+YD+ TARELF+  G S RLYRDAFEPMLLVGLFAPGEQCSAA ALGMLY+FILAHQ DFDV WCRGT GE IF+PWV R+E+ GAKVL  +RV+D+ +         V CGD++F  DAV+ AVG+ G++ I+ ++P L     F  +MNL +VD LAVRL+ DR++ IP
Sbjct:   98 EVESPIFQDEPRLPTPLGTFLYTKFKRLPLVDRLSALPLLYAVLDFDNSDEAWRRYDRVTARELFKQFGVSARLYRDAFEPMLLVGLFAPGEQCSAAAALGMLYYFILAHQPDFDVVWCRGTVGEKIFRPWVDRLEKIGAKVLTNQRVTDL-IVDSNNRATGVVCGDKTFEADAVIFAVGVTGMQKIISSSPALQSRQEFRDVMNLGAVDVLAVRLWFDRKINIP 321
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8450.16581.1 vs.
Match: FAD-dependent (oxidoreductase n=1 Tax=Coleofasciculus sp. FACHB-712 TaxID=2692789 RepID=UPI00168492CE)

HSP 1 Score: 288 bits (736), Expect = 2.090e-93
Identity = 139/225 (61.78%), Postives = 172/225 (76.44%), Query Frame = 1 
Query:    1 QVISPIFQNMPRLPSPMGTFLYPSFLRLPWFDRLTALGLLASVVDWDNTPEAWRKYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGALGMLYFFILAHQADFDVKWCRGTTGEMIFKPWVQRIEENGAKVLVEKRVSDVEVCPDTGSVVSVSCGDESFPCDAVVSAVGINGVKGIVRAAPELSKLPFFSKMMNLRSVDALAVRLYLDRRVRIP 675
            +V SPIFQ++PRLP+P+GTFLY  F RLP  DRL+AL LL +V+D+DN+ EAWR+YD  TARELF+  G S RLYRD+FEPMLLVGLFAPGEQCSAA ALGMLY+FILAHQ DFDV WCRGT GEMIF+PWV+RIE+ GAK+L  +RVSDV +        +V CGDE F  DA++ AVGI+G+K I+  +P L     F  + NL +VD LA RL+ +R++ IP
Sbjct:   98 EVESPIFQDLPRLPTPLGTFLYTQFKRLPLSDRLSALPLLYAVIDFDNSDEAWRRYDSVTARELFKDFGVSARLYRDSFEPMLLVGLFAPGEQCSAAAALGMLYYFILAHQPDFDVVWCRGTVGEMIFRPWVERIEQTGAKLLPNRRVSDV-IVDSNNQATAVVCGDEVFEADAMIFAVGISGMKKIISGSPSLQNRKEFRDIHNLGAVDVLATRLWFNRKINIP 321
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8450.16581.1 vs.
Match: Amine (oxidase (Fragment) n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A351LB13_9CYAN)

HSP 1 Score: 286 bits (732), Expect = 2.270e-93
Identity = 139/225 (61.78%), Postives = 170/225 (75.56%), Query Frame = 1 
Query:    1 QVISPIFQNMPRLPSPMGTFLYPSFLRLPWFDRLTALGLLASVVDWDNTPEAWRKYDKYTARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGALGMLYFFILAHQADFDVKWCRGTTGEMIFKPWVQRIEENGAKVLVEKRVSDVEVCPDTGSVVSVSCGDESFPCDAVVSAVGINGVKGIVRAAPELSKLPFFSKMMNLRSVDALAVRLYLDRRVRIP 675
            +V SPIFQ++PRLPSP+GTF+Y  F RLP  DRL+AL LL +VVD+DN+  AWR+YD  TARELF+  G S RLYR++FEPMLLVGLFAPGEQCSAA  LGMLYFFILAHQ DFDV WCRGT GE IF+PWV++IE+ G KV   +RVSD+ V  D   V  V CGDE+F  DAV+ AVG+ G++ I+  +P L K   F  +MNL +VD LA RL+ DR++ IP
Sbjct:   98 EVESPIFQDLPRLPSPLGTFIYTQFKRLPLIDRLSALPLLYAVVDFDNSDAAWRRYDGVTARELFKQFGVSARLYRESFEPMLLVGLFAPGEQCSAAATLGMLYFFILAHQPDFDVVWCRGTVGEKIFRPWVEQIEKAGGKVATNRRVSDLIV--DNNRVTGVVCGDETFDADAVIFAVGVTGMQKIISGSPSLQKRQEFRDVMNLGAVDVLATRLWFDRKIDIP 320
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8450.16581.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Amine7.360e-15998.24oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Amino_oxidase1.280e-15496.04domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
FAD-dependent3.180e-9663.06oxidoreductase n=1 Tax=Geminocystis herdmanii TaxI... [more]
Amine4.500e-9664.89oxidase n=2 Tax=Pseudanabaena TaxID=1152 RepID=A0A... [more]
FAD-dependent1.080e-9460.89oxidoreductase n=1 Tax=Synechococcales cyanobacter... [more]
FAD-dependent1.540e-9361.78oxidoreductase n=1 Tax=Myxosarcina sp. GI1 TaxID=1... [more]
Amine1.720e-9362.22oxidase n=1 Tax=Aliterella atlantica CENA595 TaxID... [more]
Amine1.880e-9361.33oxidase (Fragment) n=1 Tax=filamentous cyanobacter... [more]
FAD-dependent2.090e-9361.78oxidoreductase n=1 Tax=Coleofasciculus sp. FACHB-7... [more]
Amine2.270e-9361.78oxidase (Fragment) n=2 Tax=unclassified Cyanobacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8450contigE_fasciculatus_S2_contig8450:1320..6676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score445.3
Seed ortholog evalue1.7e-122
Seed eggNOG ortholog2880.D8LG87
Model size687
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG1231@1,KOG0029@2759
Ec32 ortholog descriptionAmine oxidase
Ec32 orthologEc-17_004150.1
Cds size660
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8450.16581.1prot_E_fasciculatus_S2_contig8450.16581.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8450 1320..6649 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842504.1727352-CDS-E_fasciculatus_S2_contig8450:1319..13861696842504.1727352-CDS-E_fasciculatus_S2_contig8450:1319..1386Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8450 1320..1386 -
1696842504.185964-CDS-E_fasciculatus_S2_contig8450:1519..17021696842504.185964-CDS-E_fasciculatus_S2_contig8450:1519..1702Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8450 1520..1702 -
1696842504.1980455-CDS-E_fasciculatus_S2_contig8450:2688..28331696842504.1980455-CDS-E_fasciculatus_S2_contig8450:2688..2833Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8450 2689..2833 -
1696842504.2200704-CDS-E_fasciculatus_S2_contig8450:3707..38351696842504.2200704-CDS-E_fasciculatus_S2_contig8450:3707..3835Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8450 3708..3835 -
1696842504.2394445-CDS-E_fasciculatus_S2_contig8450:4818..48571696842504.2394445-CDS-E_fasciculatus_S2_contig8450:4818..4857Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8450 4819..4857 -
1696842504.2558417-CDS-E_fasciculatus_S2_contig8450:6551..66491696842504.2558417-CDS-E_fasciculatus_S2_contig8450:6551..6649Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8450 6552..6649 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842504.271998-UTR-E_fasciculatus_S2_contig8450:6649..66761696842504.271998-UTR-E_fasciculatus_S2_contig8450:6649..6676Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8450 6650..6676 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8450.16581.1

>prot_E_fasciculatus_S2_contig8450.16581.1 ID=prot_E_fasciculatus_S2_contig8450.16581.1|Name=mRNA_E_fasciculatus_S2_contig8450.16581.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=220bp
MPRLPSPMGTFLYPSFLRLPWFDRLTALGLLASVVDWDNTPEAWRKYDKY
TARELFRMMGCSERLYRDAFEPMLLVGLFAPGEQCSAAGALGMLYFFILA
HQADFDVKWCRGTTGEMIFKPWVQRIEENGAKVLVEKRVSDVEVCPDTGS
VVSVSCGDESFPCDAVVSAVGINGVKGIVRAAPELSKLPFFSKMMNLRSV
DALAVRLYLDRRVRIPYQR*
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mRNA from alignment at E_fasciculatus_S2_contig8450:1320..6676-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8450.16581.1 ID=mRNA_E_fasciculatus_S2_contig8450.16581.1|Name=mRNA_E_fasciculatus_S2_contig8450.16581.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5357bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8450:1320..6676- (Ectocarpus fasciculatus EfasUO2)
CAGGTAATATCTCCGATCTTCCAGAACATGCCACGGCTGCCCTCCCCCAT
GGGCACGTTCCTGTACCCCAGTTTTCTCAGGCTTCCCTGGTTCGACCGCC
TCACAGCCCTGGGTTTGCTCGCGAGGTAGGCAACAGGTCGGCGTGCTGTA
GTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTT
GTTGGTGGTGGTGGTGGTGTTGGTGTTGGTGTTGGTGTTGTTGTTGTTGT
TGTTTTTGTTGGTGTTGTTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTG
TTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGGTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGTGGTGGTG
GTGGTGGTGGTGGTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGGT
GGCGGTGGCGGTGGCGGTGCGGTGGTGTTGGTGTTGGTGTTGGTGTTGGT
GTTGGTGGTGGCGGTGGCGGTGGCGGTGCGGTGGTGTTGGTTTTATTGTT
GTCGGTGATAGTGCCGTCGCCTTTTTGTTGAATTTGCCGCTGCTCATATC
GTTGTCGTTGTTGTTGAAAACTCCGAAGAAAACACGCTTACAACTGCTAC
AGTATCGCAAGACTACCTTGGAAACAGCAAATGGCCAAGAACCTCGGCAA
CAGAAGCATCGTTGGGAGTACAGTATCGCAAGACTACCTTGGAAACAGCA
AATGGCCAAGAACCTCGGCAACAGAAGCATCGTTGGGAGTTGGAAACTTT
CTTAGGAATAGGTTGCTGTTTCGTGATCCTTTGAGTTTTGGAACCTGACG
TTTTTTGCGTAACATCCGAAAAAGAAAACGAAGCAAGACGTTGTTGTGAA
TATTGTTATGAAACAAAAACTTGTTTCGTATTGCTGGGAACCAGACTGCC
CGTTGGTATCATTTGGAACCAAGGTACGCGAGGTCTCCACGAGAAAATGC
CGAGCAGGAAGCAGAGAGGGGCTGAAACTAATCGCAAATGTCGTGATGGC
TGCTGTTTGAAGGGAAGAGAGGCACTTGGCACAATCAGCGGGGCTTCTCG
AAACGAAACGTTTTCGGACCTGAACCGTTTGCAGAATGACCACCCGTTCA
TACAGTTTTCGTGTCGTTCTCGAGCGTGCCTAGATAGCAAATGAGCTCGA
GCTTTGAAAAGCGTGAATCACGTAGCTCTGTCGATAAGAGTGAGTTCCAG
TTAAAGCTTATAGCTAGCTTATAGCCAGTGAATGGAGTGACTACTGGACA
ACAGAAGAGCGTTCGAGACCTCAAAAGTAGAGCGTTCAAGACTTCAAGCG
TCAAGCGTTCAAGACCTCAATAGAAGAACGTTCAAGACCTCAAACGATCA
ACCGTCATACAGGAAAATATCGTTCTCGCTCGCGGATAGTGATTAGCGTC
AACGACGTGCATAGATTGCGCTCGCTTCGGCGGGATTCAGGTCTGCTGAT
ACACGACGTGTCATGGAAGCAAGACTCCTGCTTGCAACAACAACATCGCG
TCGACGCCCCTCGCCTTGTAGCTGCATTTGTGACGCACCGGGCGGCTTTA
AGCTAGCTGCTGTGCAGGTAGGGCAGCATAGAACAACTGTAGAAGAGGGA
TCGAGTGTTTTGTGAGGAGGTACATAACCGTCCTTCGTGTGCCGTGAGGA
GCTCGTGTGCCGCGTCGTTCGACAATCGCCGCCATTTTGTTCCGATTATC
TCTCTCCCTTCCCTCAATGATTGCATGCATGAACACGCAAAACTACATGG
ATGGTGGCCGACTGCGCAGCGTCGTGGACTGGGACAACACCCCAGAGGCG
TGGCGAAAGTGAGTAGAGTGCCGCCATGTGTCTAGCTGTATAGAGAGGGA
TCGCAATAGATTAAACTGATCCTCGTGACGAGACGAGCAGTGTGCGTTGC
GGCTTGAAAATTCTCGCCAGAAACGAAAGTTAAGTGTTTTTCGCCGCGCA
GGTCCTGTTTGCCTTAGCCAAGGCCTACTTCCAGGGTTTCCGGTCGCCAA
ACACTTCTTCATGTTCGGTTGAGGAATATGGTGTCAAGGAAGAACGCGTG
TTGACTATGAACGCGCTCCGTACGGGTAGAGGCAATATCGTGTGAACCGG
GATTGGCGTTTTTTTTGTTTTTTTTTCGTCTTTACTTCGAATGAGCGCTC
ACAGCATTTGTGCCGTTTACAAGTACTCCAACCCGTGGTCACACGGTTCC
TCTCCCAGAGGAGGCCTCATACCCACCCCCCCTCCTGCGGTACCTCGCCT
TCCTTCCGTCCCTCCTTGGATTGTTAATTTATGTAGAACTCTCTTACATA
TCTCCCTTCCCTTCCATCTGTGTACACACGAATAAGCGCTTGGTGACATA
AAATACTAGACCGACCAATGTGCGGCGGAAGGGTCTCGAACAAACGGTAC
AATACTCTGTGATGGTTTGTTCTCGTCATCCCCCAACTTTAACTTTTCAA
CTGTCGCTCGAGGTCTCCAGATACCCTTGTGAGGGGTTGTCTTCCGTACA
GAAGAGCTCCGATCCGAGGCTCCCCAGTGCTCTATTAACTACTAGGGAAA
TAGAGTGCGGAATGAACGACGACGCATCAACGTACTTTGTGCTAACATCG
AGAGGTGCTCTCGGCGGCATTAAAATTGGTGGCGTATCATTCGATGGTGC
CACACCTGTGTTGTTCGGTCGGCAGCAGTACACGGTGCAAAGTCCTCCTG
TTTGTATCGTGTGATACGGAAATAGACGTCTACCATGGAAGCCGTTGCTG
TGCATGTAACGGCGGTGGTATGTATTCTGACAAACAAACAGGTATGACAA
GTACACGGCTCGAGAACTGTTCCGAATGATGGGGTGCTCCGAAAGGCTGT
ACAGGGATGCCTTCGAGCCCATGCTGCTGGTCGGCCTATTTGCACCCGGG
GAGCAGTGCAGCGCGGCAGGTGCGTGGTCGTTCAACTCATCAACGACCCG
TGGGCGCCCGCCGAGTAAACGTTTGCTGTTTTTTTTAGAATTTGTTTATC
GAAGAGTTGAAGAAATTATCATGCATAACTAATTCATTTTGGTACTTTTG
AGTCGTCTGAAGCAACACGCTTCCTTGTTTGACTTCAGAATGAATAGTTT
CATTTCTCGAAAGAATTAGTGAAATAACCACTTGGAATTTCGCTGTGTAC
CTACCTCGTGTGGTATGCATACGTCAACGCCGCACATCGGGTTCTCAAGG
CGGCCCTCCAGACCCATATCATACAAGCCGTTATTGAAAGAGAACCCTCG
GGCTTTTTCCATGCCTTTCAACCCAAATCCTCTCCTCCGCCGTGCGTTCC
CCACTGGCTTTGGCTCCATTTGTTTTCGTTTCCACCTAGACAGAATAATA
GTGTCTCTAGACTTTGTCCTGTCGCTAGTTCTGGCTTGCCCCCCCCCCCC
CCCGACGCGTAGTCAATGGTCAAACAACTAGGGCATGCGAAACATGAGTC
GCCCCCTCCCCTACTTTGCGCCATGCTTTCTGTGCTTCCTGGGCTACTCC
GATGTCTTGCTCAAAAGGTTTCCGGGGACAGCCGTCGCGAGCGATTTTTT
CTTCGTCTCCGTTGCAGCAGCCGGGCGTTACGTAGGCACGTCTATTCTCC
CAGCTTCTTTTCTCTCTGCCTACCGCCCTAGTTTATGCCATTGGTCATTC
CGCTTCCAGACTTGGGATTCTGCAGAGTAGAGTACACCCCCTCTCTACCT
AACCCCCCCCGGTCCTGCATCCATTCGTTGTGCGTTTCACGATTAACCCT
CCTGTCTCGCTGTCGCTGTCGCTGTCGCTGTTGTTGTTGCTAGGCGCTCT
GGGGATGCTGTACTTCTTCATCCTGGCGCACCAGGCAGACTTCGACGTGA
AGTGGTGCAGGGGCACCACGGGAGAGATGATCTTCAAGCCGTGGGTGCAG
AGGATAGAGGAGAACGGAGCGAAGGTGCTGGTGGAAAAGTGAGTGATCTC
TCTCTCTCTCTCTCTTCCATGGAGACCCTCATTTGTAGCAGGGAATCAAG
GGGGGGAGGATCGATACGGAGAATGGTACCGTGGGATGGTGGAGAAGTGA
GCGACATGTTTTGCCACGAATTCGCGGCAAGAGGTGGTCGCAGGGTTAGC
TGTGAGCAGGTGTTGTGCGTGCATTCAAAGCTCAAAATTCTTCGCTGCCT
GCTCGCCCCAGATCGCAGTCCGGAACGCAAGGTTACGACGAGGTGCGGTT
CGCGAAGCCATTTGCGGTCGTACGTTTTGCCCAAGGGGTCTGTTCGTTCT
CACCCCGCCCGACCTGCGTTGTCACCCTAGACTACTCCCACTCCCTCCAC
CCGCATGCGTGCATCTCACCGTACCGAAAAATACGGGCAAAATGACTATG
AATACAGTGATTGTACTGTACTTCTCCGTCACCAAGAGGACATCCCACCT
AACCCTAACCCTAACCCCGAAACAATGGTGTATTATAGTGTATTATACGA
TCGAGAATTTCGCTAAACTGCTACTTCTCCGCTACCACGAGTTTGGTGGG
TGCAATACAAAAGTAGTCGAAACACGACCGACACGAACGAAGAACGTTCT
TCGAACAAAGAACGTTCTTCGCGTCGACGAGATCGTTTTCCAAAAAACAT
AATTTTGGGCATTCGCAGCCTCTTAGGTTGTGCAACAGCAGTTGAGTCGA
GCTTTGTTTTAAGAACCGACCGCACACCCGTGCGGCTCGCGATGGCTCTA
ATCGCACTGGCGATCCATTCATGCGGGTCGCCCTGCCTCTTGAGGTATTC
GTGATCCACTGTGCGCCTGACGCTCAAGGCACCGGCCATCTCCCAACCCC
CCACACTAAGCACCGTACGCCGTCGTCCCCTCGCTTATTTCCCTCAAGAA
GGGAGCTACAGCTACAGCTAGAGTAAGTTTTGTTTTGTTGTCGCTCGTTG
CTTGGGCCCGCCCGCGAAAGGAAGGCGCGTTAGCGACGTCGAGGTCTGCC
CAGACACCGGGAGCGTGGTGTCCGTGTCGTGCGGGGACGAGTCGTTCCCG
TGCGACGCGGTCGTGTCTGCGGTGGGCATCAACGGGGTCAAGGGCATCGT
GAGGGCGGCGCCGGAGCTGTCTAAGCTGCCGTTCTTCTCCAAGATGATGA
ATCTCAGGTCAGCGCAGGTAGCCCACGGTCGGGTTCGGACGGGCGATGAG
CATGAAGTACGAGCACCATGACCAGTTATCAACATACACACACATGATAA
AAGTCAAGTGGGTGTATCTGTTTGGTGTTTGTTCGTTCAGGTCTGTGGAC
GCGCTTGCGGTTCGGCTGTACCTGGACAGGAGGGTGAGGATACCCTACCA
GAGGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8450:1320..6676-

>mRNA_E_fasciculatus_S2_contig8450.16581.1 ID=mRNA_E_fasciculatus_S2_contig8450.16581.1|Name=mRNA_E_fasciculatus_S2_contig8450.16581.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=660bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8450:1320..6676- (Ectocarpus fasciculatus EfasUO2)
ATGCCACGGCTGCCCTCCCCCATGGGCACGTTCCTGTACCCCAGTTTTCT
CAGGCTTCCCTGGTTCGACCGCCTCACAGCCCTGGGTTTGCTCGCGAGCG
TCGTGGACTGGGACAACACCCCAGAGGCGTGGCGAAAGTATGACAAGTAC
ACGGCTCGAGAACTGTTCCGAATGATGGGGTGCTCCGAAAGGCTGTACAG
GGATGCCTTCGAGCCCATGCTGCTGGTCGGCCTATTTGCACCCGGGGAGC
AGTGCAGCGCGGCAGGCGCTCTGGGGATGCTGTACTTCTTCATCCTGGCG
CACCAGGCAGACTTCGACGTGAAGTGGTGCAGGGGCACCACGGGAGAGAT
GATCTTCAAGCCGTGGGTGCAGAGGATAGAGGAGAACGGAGCGAAGGTGC
TGGTGGAAAAGCGCGTTAGCGACGTCGAGGTCTGCCCAGACACCGGGAGC
GTGGTGTCCGTGTCGTGCGGGGACGAGTCGTTCCCGTGCGACGCGGTCGT
GTCTGCGGTGGGCATCAACGGGGTCAAGGGCATCGTGAGGGCGGCGCCGG
AGCTGTCTAAGCTGCCGTTCTTCTCCAAGATGATGAATCTCAGGTCTGTG
GACGCGCTTGCGGTTCGGCTGTACCTGGACAGGAGGGTGAGGATACCCTA
CCAGAGGTGA
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