mRNA_E_fasciculatus_S2_contig8446.16578.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8446.16578.1
Unique NamemRNA_E_fasciculatus_S2_contig8446.16578.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8446.16578.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM8_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 2.480e-81
Identity = 124/162 (76.54%), Postives = 130/162 (80.25%), Query Frame = 1 
Query:    1 QARLCIALSIVIHTISLFVEGWFWAWQRNAAFGAVAVGGLVLCIYDQYMYAIGGIGFAVCALFDLFAVLRWITGDDD--------------TTAFWYALPPFLGAITMGLGASFSFTAVLFWEDGDGTAVPHEIKSVELGLAPPAAHPWTPSLAYDQQSPTP 444
            +ARLCIALSIVIHTISLFVEGW+W WQRNAAFG  AVGGLVLCIYDQYMYAIGG+GFAVCALFDLFAVLRWIT DD+              TTA WYALPP LGAITMGLGA FSFTAV FWEDGD TA+PHE K+VELGLAP AAHP  P  AY  QSP P
Sbjct:   13 KARLCIALSIVIHTISLFVEGWYWPWQRNAAFGVFAVGGLVLCIYDQYMYAIGGVGFAVCALFDLFAVLRWITDDDNIVEGDDSFDGSSEGTTALWYALPPLLGAITMGLGAIFSFTAVFFWEDGDCTAMPHEGKTVELGLAPIAAHPGAPPRAYYPQSPHP 174
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BLAST of mRNA_E_fasciculatus_S2_contig8446.16578.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS2_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.410e-47
Identity = 87/180 (48.33%), Postives = 105/180 (58.33%), Query Frame = 1 
Query:    4 ARLCIALSIVIHTISLFVEGWFWAWQRNAAFGAVAVGGLVLCIYDQYMYAIGGIGFAVCALFDLFAVLRWITGDDD-------------------------TTAFWYALPPFLGAITMGLGASFSFTAVLFWEDGDGTAVPH-------------------EIKSVELGLAPPAAHPWTP 411
            AR C  LSIVIH IS ++ G F+ WQRNA F A  +GGL+LC Y++YMY IG +GFA+CA+FD+ AVLRWIT DD+                         T   W A+PPFLGAI MGLGA F+FTA+  W+ G GTA+PH                   E K+ ELGLAPP AHP TP
Sbjct:   39 ARGCAILSIVIHAISFYLGGGFFVWQRNACFIAFVMGGLLLCFYERYMYVIGSLGFALCAVFDVLAVLRWITRDDEIFDSDDDYNTTFQVDDTQSEESSDSTILLWLAVPPFLGAIAMGLGAIFTFTAIFAWKYGGGTAIPHVPVAPQPTFDFTKQPQSQQESKTAELGLAPPTAHPRTP 218
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8446.16578.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAL4_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.860e-24
Identity = 53/140 (37.86%), Postives = 74/140 (52.86%), Query Frame = 1 
Query:    1 QARLCIALSIVIHTISLFVEGWFWAWQRNAAFGAVAVGGLVLCIYDQYMYAIGGIGFAVCALFDLFAVLRWIT-------------------------GDDDTTAFWYALPPFLGAITMGLGASFSFTAVLFWEDGDGTA 345
            QAR C   +I++H  +L V GW W WQ  A+  A  + G++LC+YD+  Y  GGI FAV A+FD+  ++ WI                           D      W+AL PFLGA+++GLGA FSFT++ FW+D    A
Sbjct:    8 QARACAICAIIVHVGALLVFGWLWVWQWIASVLAFIMCGVLLCMYDRCAYITGGICFAVAAVFDILVLVGWIAIYNNLQDDYYXXXXXXXXXXXDGEWEDWKNVILWFALLPFLGALSLGLGAVFSFTSLCFWKDAGSPA 147
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8446.16578.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized2.480e-8176.54protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM8... [more]
Uncharacterized1.410e-4748.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.860e-2437.86protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8446contigE_fasciculatus_S2_contig8446:3433..5548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size459
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_000010.1
Cds size459
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842503.728044-CDS-E_fasciculatus_S2_contig8446:3432..36441696842503.728044-CDS-E_fasciculatus_S2_contig8446:3432..3644Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8446 3433..3644 +
1696842503.741443-CDS-E_fasciculatus_S2_contig8446:4151..42931696842503.741443-CDS-E_fasciculatus_S2_contig8446:4151..4293Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8446 4152..4293 +
1696842503.7528102-CDS-E_fasciculatus_S2_contig8446:5443..55481696842503.7528102-CDS-E_fasciculatus_S2_contig8446:5443..5548Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8446 5444..5548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8446.16578.1prot_E_fasciculatus_S2_contig8446.16578.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8446 3433..5548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8446.16578.1

>prot_E_fasciculatus_S2_contig8446.16578.1 ID=prot_E_fasciculatus_S2_contig8446.16578.1|Name=mRNA_E_fasciculatus_S2_contig8446.16578.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=153bp
QARLCIALSIVIHTISLFVEGWFWAWQRNAAFGAVAVGGLVLCIYDQYMY
AIGGIGFAVCALFDLFAVLRWITGDDDTTAFWYALPPFLGAITMGLGASF
SFTAVLFWEDGDGTAVPHEIKSVELGLAPPAAHPWTPSLAYDQQSPTPAY
RG*
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mRNA from alignment at E_fasciculatus_S2_contig8446:3433..5548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8446.16578.1 ID=mRNA_E_fasciculatus_S2_contig8446.16578.1|Name=mRNA_E_fasciculatus_S2_contig8446.16578.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2116bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8446:3433..5548+ (Ectocarpus fasciculatus EfasUO2)
CAGGCACGACTTTGTATTGCGTTGTCTATCGTTATCCACACGATTAGCCT
CTTCGTGGAAGGTTGGTTTTGGGCTTGGCAGCGGAACGCTGCCTTTGGCG
CCGTCGCGGTGGGCGGCCTTGTCCTGTGCATCTACGACCAGTACATGTAT
GCCATAGGCGGCATCGGGTTCGCTGTATGTGCGCTGTTCGACCTCTTTGC
CGTTTTGCGATGGTGAGCCCCGGGAAAGGACGGCAGATTGAGGAGCAAGA
GCTCCCGATTAGAACCTTGAACTTCTGTAGGATTGATCAGGATTACACTC
GTCACCGCTGTTGTTCAGCCAAACTTTGTTTTGGTAACGGCGCTCCCCGT
TTTGGGTGGAGTACCTGCGTGATGAACGCCTCACTCAGTCACCTTTCGTC
GCACGCGCACCATGTACGGCACAGCGCAATGCATGTTGTCAGACCGGCAT
TGATGTCTCTAACGTAGGCCAGTTCTACCAATCTGCATCAGAGCTTCTTC
GCCTTGGCCCCAGCTTGGGACGATCTGCGTTTCTGTTGGTAGACAAAAAT
CAAGTGGTTGGTTGAAGGCTTCAAAGTCTGTGATTCTGTGTTTGCCGCCC
ATGAGACTACCTGAGCCTGACCACCAGGCTGGAAACGAACCCGCCCTTAC
TTAGTTGCCGGCTGCTCCTTCCTCACCGTACATCCAACAACAACGCCAAC
ACCTAACCCTGTATTTCAGGATCACGGGAGACGATGACACTACTGCCTTC
TGGTACGCCTTGCCGCCTTTTCTCGGAGCCATCACGATGGGCCTGGGTGC
TAGTTTTTCCTTCACGGCGGTGCTCTTCTGGGAGGACGGTGATGGCACGG
CGGTGCCCCACGTGAGTGCTGAAGAATAGTTCGGCATCGGTTCGCCGACG
CTAAAGTGTTTTCACAGTAAAACTACCACACCCCAGCTTCGTCCGAAGCG
TCATGCCCAATAGAACGTCGGCATGTCGATTCTCCCTGGCAAAGTATCAG
CATTCTTGGAAGGAGAGCTTTAGATTGTTTCTCGCCATTTTGTCGACGGT
CGTTGGCCCTGCCCCGCATGTTGATGCTGTATCTGGACACTTCCCCTTCA
TAGAGAGAATGCCACGACCTGCTACCGTACTGTACAAACGCTACGCGGAG
ACCGGTATCAGCCTGTCTTGTATCGATTGTCCTTGGCTCGTGCTGCCGGC
AGGAAGTTCGTTTTACGTCAAATTGTGCCCCGCCCATGCCCTATGCACCA
TCGTTTGTCCAAAGTTTGTCCCTGGCACAGGGTACACTGTTTTCCGCCGT
AGGGGAGGTCGGTGCGAAATCAAAACACGTTGGCAACTACCGTGTCTTCG
GGTGCATCGCCCCACCCAGAGTTGCTTTCTTGTCTTCTTCTCTGGTTGTT
ATTTCTGGGTGAAAATGTTTCTTGTTCAAAAGGTGTGGCATGACTTGTCA
ATCCCCAACTATTTATCTCCCCGGATTTTGCCAGAATACGGACGGTGTTC
TCTTGTCACAGAGCTTGTCAAACATTCCTCTCCTCTCAAGGATTATTTTG
TTGTTCCTGTTCGAAACGACCGTTGGTGAGGTATGTATTCGGCGGTTCGT
CCAAAACGACTATCGTTTTCCAGACTCATCTACATGTGTACGTAGTTCGA
GGAGGCACCTGTTCGACAGGTTCCACAAGCTGTAGGTGACGTTTTTTGTC
AATGCCTCATGGTGTTATGGTTTTTGAGCGCCCGTACTAGAGGACATGGG
CAGTGAAGAAATTGAGCCTCGAAAACGCAAAACCTTTTAACTTCAGCACT
CTTTGTGAGCTTGGAGGAAAAACCACTACACTGCACCCTATACAGCGCTC
ATTTTTGTAGCTTAACCCTAGGAACTTAGGACCCTAGCCTCGACAAAAAC
TATGAGGCACGCATAACTGCGGGTGCTAACGCCGCGTGCTGCGTCCTTTT
CGAACCATGTCGCGGCCGGACCTGTTCCCACGCTCGACTCCACCAACCAC
AGAACCGGCAGGAGATCAAGAGCGTGGAGCTCGGACTGGCACCGCCCGCT
GCGCACCCATGGACCCCATCCCTCGCGTACGACCAACAGTCGCCAACCCC
GGCATACCGAGGATAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8446:3433..5548+

>mRNA_E_fasciculatus_S2_contig8446.16578.1 ID=mRNA_E_fasciculatus_S2_contig8446.16578.1|Name=mRNA_E_fasciculatus_S2_contig8446.16578.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=459bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8446:3433..5548+ (Ectocarpus fasciculatus EfasUO2)
CAGGCACGACTTTGTATTGCGTTGTCTATCGTTATCCACACGATTAGCCT
CTTCGTGGAAGGTTGGTTTTGGGCTTGGCAGCGGAACGCTGCCTTTGGCG
CCGTCGCGGTGGGCGGCCTTGTCCTGTGCATCTACGACCAGTACATGTAT
GCCATAGGCGGCATCGGGTTCGCTGTATGTGCGCTGTTCGACCTCTTTGC
CGTTTTGCGATGGATCACGGGAGACGATGACACTACTGCCTTCTGGTACG
CCTTGCCGCCTTTTCTCGGAGCCATCACGATGGGCCTGGGTGCTAGTTTT
TCCTTCACGGCGGTGCTCTTCTGGGAGGACGGTGATGGCACGGCGGTGCC
CCACGAGATCAAGAGCGTGGAGCTCGGACTGGCACCGCCCGCTGCGCACC
CATGGACCCCATCCCTCGCGTACGACCAACAGTCGCCAACCCCGGCATAC
CGAGGATAA
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