mRNA_E_fasciculatus_S2_contig8444.16577.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8444.16577.1
Unique NamemRNA_E_fasciculatus_S2_contig8444.16577.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8444.16577.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7C0_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 4.840e-21
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 LVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRSRRVVPSAPVG 147
            LVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRSRRVVPSAPVG
Sbjct:  133 LVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRSRRVVPSAPVG 181
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BLAST of mRNA_E_fasciculatus_S2_contig8444.16577.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 8 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V501_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.690e-11
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 LVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRSRRVVPSAPVGR 150
            LVELLEVPQLMDACVR+ L EEALSIA FASTLERRHR     P++  G+
Sbjct:   28 LVELLEVPQLMDACVRNGLYEEALSIAQFASTLERRHRLPIAGPASASGK 77
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BLAST of mRNA_E_fasciculatus_S2_contig8444.16577.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 8 n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UMN6_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.180e-9
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 LVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRSRRVV 129
            L+ELLE+P L DACVRS+L EEALSIA+FA+TLERRH  + VV
Sbjct:   82 LLELLELPSLCDACVRSNLYEEALSIASFANTLERRHTDKNVV 124
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BLAST of mRNA_E_fasciculatus_S2_contig8444.16577.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 8 (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EBJ7_TRICV)

HSP 1 Score: 57.8 bits (138), Expect = 2.610e-9
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 LVELLEVPQLMDACVRSDLMEEALSIATFASTLERRH 111
            L+ELLE+P LMDACVRS+L +EALS+A FA+TLERRH
Sbjct:   30 LLELLELPSLMDACVRSNLYDEALSVAGFANTLERRH 66
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BLAST of mRNA_E_fasciculatus_S2_contig8444.16577.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 8 n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AIA0_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.980e-9
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 LVELLEVPQLMDACVRSDLMEEALSIATFASTLERRH 111
            L+ELLE+P LMDACVRS+L EEALSIA FA+TLERRH
Sbjct:  103 LLELLELPSLMDACVRSNLYEEALSIAAFANTLERRH 139
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BLAST of mRNA_E_fasciculatus_S2_contig8444.16577.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 8 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMK7_THAPS)

HSP 1 Score: 59.7 bits (143), Expect = 4.070e-9
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 LVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRSRRVVPSAPVG 147
            L+ELLE+P LMDACVRS L E+ALSIA FA+TLERRH       SA VG
Sbjct:  127 LLELLELPSLMDACVRSSLYEDALSIAGFANTLERRHLMETSGASAAVG 175
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BLAST of mRNA_E_fasciculatus_S2_contig8444.16577.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 8 n=2 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z594_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 7.610e-9
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 LVELLEVPQLMDACVRSDLMEEALSIATFASTLERRH 111
            L+ELLE+P LMDACVRS+L EEALSIA F++TLERRH
Sbjct:  103 LLELLELPSLMDACVRSNLYEEALSIAAFSNTLERRH 139
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BLAST of mRNA_E_fasciculatus_S2_contig8444.16577.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 8 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFI0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 7.610e-9
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 LVELLEVPQLMDACVRSDLMEEALSIATFASTLERRH 111
            L+ELLE+P LMDACVRS+L +EALSIA FA+TLERRH
Sbjct:  104 LLELLELPSLMDACVRSNLYDEALSIAAFANTLERRH 140
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BLAST of mRNA_E_fasciculatus_S2_contig8444.16577.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 8 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQB5_PHATC)

HSP 1 Score: 58.9 bits (141), Expect = 7.610e-9
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 LVELLEVPQLMDACVRSDLMEEALSIATFASTLERRH 111
            L+ELLE+P LMDACVRS+L EEALSIA F++TLERRH
Sbjct:  162 LLELLELPSLMDACVRSNLYEEALSIAAFSNTLERRH 198
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8444.16577.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 8 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S572_THAOC)

HSP 1 Score: 57.8 bits (138), Expect = 1.950e-8
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 LVELLEVPQLMDACVRSDLMEEALSIATFASTLERRH 111
            L+ELLE+P LMDACVRS L E+ALSIA FA+TLERRH
Sbjct:  122 LLELLELPSLMDACVRSSLYEDALSIAGFANTLERRH 158
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8444.16577.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Conserved4.840e-21100.00oligomeric Golgi complex subunit 8 n=2 Tax=Ectocar... [more]
Conserved3.690e-1172.00oligomeric Golgi complex subunit 8 (Fragment) n=1 ... [more]
Conserved2.180e-972.09oligomeric Golgi complex subunit 8 n=1 Tax=Grammat... [more]
Conserved2.610e-975.68oligomeric Golgi complex subunit 8 (Fragment) n=1 ... [more]
Conserved2.980e-981.08oligomeric Golgi complex subunit 8 n=1 Tax=Pseudo-... [more]
Conserved4.070e-967.35oligomeric Golgi complex subunit 8 n=1 Tax=Thalass... [more]
Conserved7.610e-978.38oligomeric Golgi complex subunit 8 n=2 Tax=Pseudo-... [more]
Conserved7.610e-978.38oligomeric Golgi complex subunit 8 n=1 Tax=Fragila... [more]
Conserved7.610e-978.38oligomeric Golgi complex subunit 8 n=2 Tax=Phaeoda... [more]
Conserved1.950e-878.38oligomeric Golgi complex subunit 8 n=1 Tax=Thalass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8444contigE_fasciculatus_S2_contig8444:6250..6399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score77.0
Seed ortholog evalue2.2e-12
Seed eggNOG ortholog2880.D7G7C0
Preferred nameCOG8
Model size150
KEGG koko:K20295
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000139,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0007275,GO:0007548,GO:0008104,GO:0008150,GO:0008406,GO:0009653,GO:0009887,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0017119,GO:0022414,GO:0030334,GO:0031090,GO:0031984,GO:0032258,GO:0032501,GO:0032502,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035262,GO:0040012,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045137,GO:0045184,GO:0046907,GO:0048193,GO:0048513,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051270,GO:0051641,GO:0051649,GO:0061458,GO:0061919,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0072665,GO:0098588,GO:0098791,GO:0099023,GO:2000145
Exons1
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG2069@1,KOG2069@2759
Cds size120
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842503.6733723-UTR-E_fasciculatus_S2_contig8444:6249..62791696842503.6733723-UTR-E_fasciculatus_S2_contig8444:6249..6279Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8444 6250..6279 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842503.690759-CDS-E_fasciculatus_S2_contig8444:6279..63991696842503.690759-CDS-E_fasciculatus_S2_contig8444:6279..6399Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8444 6280..6399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8444.16577.1prot_E_fasciculatus_S2_contig8444.16577.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8444 6280..6399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8444.16577.1

>prot_E_fasciculatus_S2_contig8444.16577.1 ID=prot_E_fasciculatus_S2_contig8444.16577.1|Name=mRNA_E_fasciculatus_S2_contig8444.16577.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=40bp
MDACVRSDLMEEALSIATFASTLERRHRSRRVVPSAPVGR
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mRNA from alignment at E_fasciculatus_S2_contig8444:6250..6399+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8444.16577.1 ID=mRNA_E_fasciculatus_S2_contig8444.16577.1|Name=mRNA_E_fasciculatus_S2_contig8444.16577.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=150bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8444:6250..6399+ (Ectocarpus fasciculatus EfasUO2)
CTGGTCGAGCTGCTGGAGGTGCCGCAGCTGATGGACGCGTGCGTGCGCAG
CGACCTGATGGAGGAAGCCCTCTCCATCGCCACCTTCGCCTCTACGCTTG
AGAGGCGGCACCGAAGTCGCCGAGTGGTGCCTTCCGCGCCCGTCGGCAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8444:6250..6399+

>mRNA_E_fasciculatus_S2_contig8444.16577.1 ID=mRNA_E_fasciculatus_S2_contig8444.16577.1|Name=mRNA_E_fasciculatus_S2_contig8444.16577.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=120bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8444:6250..6399+ (Ectocarpus fasciculatus EfasUO2)
ATGGACGCGTGCGTGCGCAGCGACCTGATGGAGGAAGCCCTCTCCATCGC
CACCTTCGCCTCTACGCTTGAGAGGCGGCACCGAAGTCGCCGAGTGGTGC
CTTCCGCGCCCGTCGGCAGG
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