mRNA_E_fasciculatus_S2_contig8383.16516.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8383.16516.1
Unique NamemRNA_E_fasciculatus_S2_contig8383.16516.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH1_9PHAE)

HSP 1 Score: 278 bits (710), Expect = 1.950e-86
Identity = 173/290 (59.66%), Postives = 179/290 (61.72%), Query Frame = 1
Query:   25 EARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEA-----------------------------DGD---------GVGTGVF-----------------------------DGLGVTMFDRVLRDLGHGVCRMLNVQYRMNRDICDWASGE-------MYGGLLLAHPSVAERELPDLPHASLSAAGASTXXXXXXXXXXXXXXXXXXXXXCDMXXXXXXXXSRRNEREAEVALRHVKCVL 672
            EARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEA                             DG          G G G                               DGLG+TMFDRVLRDLGHGVCRMLNVQYRMNRDICDWASGE       MYGGLLLAHPSVAER+LPDLPHAS S+AG+ST                     CDM        SRRNEREAEV +RHVK +L
Sbjct:  298 EARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEAGCLLPSEAVSVPPPRAPPRSPGAHGGNSKDGGXXXXXXXXVGTGWGXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGGDGLGLTMFDRVLRDLGHGVCRMLNVQYRMNRDICDWASGEVGDRAVCMYGGLLLAHPSVAERKLPDLPHAS-SSAGSSTKEEGVEMWAAVMLLVDTTG--CDMPEEDAGGGSRRNEREAEVVVRHVKGLL 584          
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Match: R3H (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K5_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 4.790e-84
Identity = 183/252 (72.62%), Postives = 186/252 (73.81%), Query Frame = 1
Query:   25 EARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEA-----------------------------DGDGVGTGVFDGLG-----VTMFDRVLRDLGHGVCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDLPHASLSAAGASTXXXXXXXXXXXXXXXXXXXXX--CDMXXXXXXXXSRRNEREAEVALRHVKCVL 672
            EARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEA                             DG GV              +TMFDRVLRDLGHGVCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDLPH S        XXXXXXXXXXXXXXXXXXX    CDM        SRRNEREAEVA+RHVK +L
Sbjct:  393 EARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEAGCLLPSEAVSVPPPHAPARSPGAHGGNSKDGGGVXXXXXXXXXXXXXXLTMFDRVLRDLGHGVCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDLPHTSAXXXXXXXXXXXXXXXXXXXXXXXXXXDTTGCDMPEEDAGGGSRRNEREAEVAVRHVKGLL 644          
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7I8_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.920e-53
Identity = 126/223 (56.50%), Postives = 140/223 (62.78%), Query Frame = 1
Query:    4 QLKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEADGDGVGTGVFDGLGVTMFDRVLRDLGHGVCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDLPHASLSAAGASTXXXXXXXXXXXXXXXXXXXXXCDMXXXXXXXXSRRNEREAEVALRHVKCVL 672
            QL  LRKE R RE  VV  VLR R VVLATCVGAAT  LR+E FDLVVIDEAAQALEAACW+P LKGRRLVLAGDHKQL PT+K   A   G          LGVT+FDR+L   G G+ RML+VQYRM+ DIC WAS  MY G LL H S A R LP LPH + +A   +                    XX   XXXXXXXXS RN  EA VA  HV+ ++
Sbjct:  370 QLSALRKEIRVREEGVVASVLRKRRVVLATCVGAATRLLRDETFDLVVIDEAAQALEAACWVPALKGRRLVLAGDHKQLPPTIKCDAAARAG----------LGVTLFDRLLAAHGDGIARMLDVQYRMHADICSWASAAMYSGRLLPHASAAARTLPALPHVT-AARDMTAAPLLLLDTAGCDMREDSAGXXXXXXXXXXXXXSHRNPGEAAVAAAHVRALI 581          
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Match: Dna-binding (protein smubp-2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRN4_9STRA)

HSP 1 Score: 174 bits (442), Expect = 6.900e-47
Identity = 102/164 (62.20%), Postives = 115/164 (70.12%), Query Frame = 1
Query:   10 KTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEADGDGVGTGVFDGLGVTMFDRVLRDLGHG------VCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDL 483
            + LR+E R RE +VV EV+ SR+VVL TCVGA    LREE FDLVVIDEAAQALEAACWIPI +G R+VLAGDHKQLAPTVKS +AEA G          LGVT+FDR++R+ G G       C ML VQYRM+ DIC WAS  MY G L A PSVA R L  L
Sbjct:  391 RALRRELRTREARVVGEVVSSREVVLCTCVGAGARVLREERFDLVVIDEAAQALEAACWIPIQRGGRVVLAGDHKQLAPTVKSGRAEALG----------LGVTLFDRLMREDGFGGPAGGRAC-MLQVQYRMHADICAWASRAMYQGRLRADPSVAGRTLAGL 543          
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LQ57_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.410e-44
Identity = 105/235 (44.68%), Postives = 136/235 (57.87%), Query Frame = 1
Query:    1 KQLKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREE--------EFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEADGDGVGTGVFDGLGVTMFDRVLRDL---GHGVCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDLPHASLSAAGASTXXXXXXXXXXXXXXXXXXXXXCDMXXXXXXXXSRRNEREAEVALRHVKCVL 672
            +++K+LRKE R+RE KVV +VLR  +VVLAT VGAA+  L            FDLV+IDEAAQALEA+CWI +L+G+R VLAGDHKQL PT+KS   E         V +GLG T+F+R++        G  +ML VQYRM++DI +WAS  MY G LL+H SV ER+L DLP  + +  G  T                     CDM        SR NE EA + + HV  ++
Sbjct:   86 REMKSLRKEIRSREEKVVGQVLRDSNVVLATNVGAASSVLNRMVDSRGDPIPFDLVIIDEAAQALEASCWISLLRGKRAVLAGDHKQLPPTIKSTVNE---------VKNGLGQTLFERLMTSYEKESSGCSKMLEVQYRMHQDIANWASKAMYHGKLLSHESVKERKLIDLPQVTANTNGGGTSNEGIEHTTLMLIDTTG----CDMHETLNEAGSRYNEGEAGIVISHVNSLI 307          
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVU4_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.080e-43
Identity = 99/164 (60.37%), Postives = 113/164 (68.90%), Query Frame = 1
Query:   10 KTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEADGDGVGTGVFDGLGVTMFDRVLRDLGHG------VCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDL 483
            + LR+E R RE +VV EV+ +R+VVL TCVGA    LREE FDLVVIDEAAQALEAA WIPI +G R+VLAGDHKQLAPTVKS +AEA            LGVT+FDR++R+ G G       C ML VQYRM+ DIC WAS  MY G L A PSVA R L  L
Sbjct:  834 RALRRELRTREARVVGEVVSTREVVLCTCVGAGARVLREERFDLVVIDEAAQALEAANWIPIQRGGRVVLAGDHKQLAPTVKSGRAEALA----------LGVTLFDRLMREDGVGGPAGGRAC-MLQVQYRMHADICAWASRAMYEGRLRADPSVARRTLAGL 986          
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YDZ8_9STRA)

HSP 1 Score: 155 bits (391), Expect = 4.080e-43
Identity = 94/192 (48.96%), Postives = 119/192 (61.98%), Query Frame = 1
Query:    1 KQLKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREEE--------------FDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEADGDGVGTGVFDGLGVTMFDRVLRDLGHG---------VCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDLPHASLSAA 507
            +++K+LR+E R RE KVV+E+L S  VVLATCVG+A   L+                 FDLVVIDEAAQALEAACWIP L+G+RLVLAGDHKQL PT++S + +         V  GL  TMF+RV+   G           V RML +QYRMN++I DWAS  +YGG L  H SVA R L  L  + L+++
Sbjct:   71 REMKSLRQEVRQREEKVVRELLTSAQVVLATCVGSANSILKSFTRGNGDNNNKKDGGFFDLVVIDEAAQALEAACWIPALRGKRLVLAGDHKQLPPTIQSNQHQ---------VAKGLSTTMFERVMSLYGDDDPNVGTAGRVSRMLRIQYRMNQNIADWASQALYGGHLQTHDSVANRTLAQLVGSPLASS 253          
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T598_9STRA)

HSP 1 Score: 164 bits (414), Expect = 4.380e-43
Identity = 105/233 (45.06%), Postives = 134/233 (57.51%), Query Frame = 1
Query:    1 KQLKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSL------REEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEADGDGVGTGVFDGLGVTMFDRVL---RDLGHGVCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDLPHASLSAAGASTXXXXXXXXXXXXXXXXXXXXXCDMXXXXXXXXSRRNEREAEVALRHVKCVL 672
            +++K LRKE RARE  VV ++L + DVVLAT VGA + +L      R E FDLVVIDEAAQALEA+CWI ILKG+RLVLAGDHKQL PT+KS +           V  GLG T+F+R++   ++ G  + RML  QYRMN DI +WAS   YGG L++H +V   +L DLPH +                             CDM        SR N+ EA+V   HV+ +L
Sbjct:   98 REVKILRKELRAREEGVVADLLMNSDVVLATNVGAGSSTLSKYLQKRGEGFDLVVIDEAAQALEASCWISILKGKRLVLAGDHKQLPPTIKSNEVR---------VQRGLGRTLFERIMGSKQEDGKQMSRMLRTQYRMNADIANWASKASYGGNLISHKTVEAHKLSDLPHVTPGVDDVLNFSPLLLIDSAG----------CDMHETVNSAGSRYNDGEAKVVAIHVESLL 311          
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Match: AN1-type (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5R7_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.580e-42
Identity = 93/167 (55.69%), Postives = 114/167 (68.26%), Query Frame = 1
Query:    7 LKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEADGDGVGTGVFDGLGVTMFDRVLRDLG-HGVCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDLPHASLSA 504
            LK  RKE R RE KVV E+++  DVV AT VGAA+  L++  FDLVVIDEAAQALEAACW+PILK +R VLAGDHKQL PT+KS+ A ADG          L +T+FDRV R  G   V +ML  QYRM+  I DW+S  MY G L +   VA R+L +LPH +++A
Sbjct:  329 LKANRKEVRQREHKVVVELVKHSDVVFATNVGAASKLLKDATFDLVVIDEAAQALEAACWVPILKAKRCVLAGDHKQLPPTIKSKAAAADG----------LELTLFDRVTRLAGTQSVVKMLTTQYRMHARISDWSSRAMYDGALESFEGVATRKLHELPHVTIAA 485          
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MFF8_9STRA)

HSP 1 Score: 155 bits (391), Expect = 6.160e-42
Identity = 89/177 (50.28%), Postives = 116/177 (65.54%), Query Frame = 1
Query:    4 QLKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILK-----GRRLVLAGDHKQLAPTVKSRKAEADGDGVGTGVFDGLGVTMFDRVLRDLGHG-VCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDLPHASLSAAGAS 516
            ++++L KEAR RE  VV  +LR  D+VL+TCVGA +  L++ +FD+VVIDEAAQ LEAACWIPILK     G   VLAGDH QL PT+KS +AE  G          L VT+F+R++RD     V R+LN+QYRM+  I DWAS +MY G +++H SVA   L D+  +S     AS
Sbjct:  192 EMRSLMKEARQRERAVVVNILRKADIVLSTCVGAGSRLLKDLQFDMVVIDEAAQGLEAACWIPILKINSQTGGTCVLAGDHCQLPPTIKSPQAERGG----------LSVTLFERIIRDKRFAAVVRLLNIQYRMHHSISDWASEQMYHGAIISHESVAHHTLRDIIGSSHVQESAS 358          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.950e-8659.66protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
R3H4.790e-8472.62domain-containing protein n=1 Tax=Ectocarpus silic... [more]
P-loop2.920e-5356.50containing nucleoside triphosphate hydrolase prote... [more]
Dna-binding6.900e-4762.20protein smubp-2 n=1 Tax=Nannochloropsis gaditana T... [more]
Hypothetical1.410e-4444.68protein (Fragment) n=1 Tax=Skeletonema marinoi Tax... [more]
Uncharacterized1.080e-4360.37protein n=1 Tax=Nannochloropsis salina CCMP1776 Ta... [more]
Hypothetical4.080e-4348.96protein (Fragment) n=1 Tax=Amphiprora paludosa Tax... [more]
Hypothetical4.380e-4345.06protein n=2 Tax=Ditylum brightwellii TaxID=49249 R... [more]
AN1-type1.580e-4255.69domain-containing protein n=1 Tax=Pythium brassicu... [more]
Hypothetical6.160e-4250.28protein (Fragment) n=2 Tax=Spumella elongata TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8383contigE_fasciculatus_S2_contig8383:4710..6708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score282.7
Seed ortholog evalue1.5e-73
Seed eggNOG ortholog2880.D7G8K5
Preferred nameIGHMBP2
Model size675
KEGG koko:K19036,ko:K19783
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0000122,GO:0000166,GO:0000228,GO:0000278,GO:0000976,GO:0000977,GO:0000981,GO:0000982,GO:0001012,GO:0001067,GO:0001078,GO:0001227,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003697,GO:0003700,GO:0003723,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006310,GO:0006355,GO:0006357,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0008026,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021953,GO:0022008,GO:0022402,GO:0022607,GO:0022616,GO:0030154,GO:0030182,GO:0030424,GO:0030426,GO:0030427,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032574,GO:0032575,GO:0032991,GO:0033202,GO:0033203,GO:0033260,GO:0033267,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036477,GO:0042623,GO:0042995,GO:0043005,GO:0043021,GO:0043022,GO:0043025,GO:0043043,GO:0043139,GO:0043141,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043603,GO:0043604,GO:0043621,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044463,GO:0044464,GO:0044786,GO:0044877,GO:0045892,GO:0045934,GO:0046483,GO:0048471,GO:0048513,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050905,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051259,GO:0051260,GO:0051276,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097458,GO:0120025,GO:0120038,GO:0140097,GO:0140098,GO:0140110,GO:0150034,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902679,GO:1902969,GO:1902983,GO:1903047,GO:1903459,GO:1903506,GO:1903507,GO:1990837,GO:1990904,GO:1990955,GO:2000112,GO:2000113,GO:2001141
Exons4
EggNOG free text desc.ATP-dependent 5'-3' RNA helicase activity
EggNOG OGsCOG1112@1,KOG1803@2759
EC3.6.4.12,3.6.4.13
Cds size675
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03012,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842497.2501059-CDS-E_fasciculatus_S2_contig8383:4709..49611696842497.2501059-CDS-E_fasciculatus_S2_contig8383:4709..4961Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8383 4710..4961 -
1696842497.2728724-CDS-E_fasciculatus_S2_contig8383:5392..55411696842497.2728724-CDS-E_fasciculatus_S2_contig8383:5392..5541Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8383 5393..5541 -
1696842497.2928581-CDS-E_fasciculatus_S2_contig8383:5616..57251696842497.2928581-CDS-E_fasciculatus_S2_contig8383:5616..5725Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8383 5617..5725 -
1696842497.309998-CDS-E_fasciculatus_S2_contig8383:6543..67081696842497.309998-CDS-E_fasciculatus_S2_contig8383:6543..6708Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8383 6544..6708 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8383.16516.1prot_E_fasciculatus_S2_contig8383.16516.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8383 4710..6708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8383.16516.1

>prot_E_fasciculatus_S2_contig8383.16516.1 ID=prot_E_fasciculatus_S2_contig8383.16516.1|Name=mRNA_E_fasciculatus_S2_contig8383.16516.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=225bp
KQLKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVI
DEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEADGDGVGTGV
FDGLGVTMFDRVLRDLGHGVCRMLNVQYRMNRDICDWASGEMYGGLLLAH
PSVAERELPDLPHASLSAAGASTEEEEEGAEMWAAVMLLIDTTGCDMPEE
EAGGGSRRNEREAEVALRHVKCVL*
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mRNA from alignment at E_fasciculatus_S2_contig8383:4710..6708-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8383.16516.1 ID=mRNA_E_fasciculatus_S2_contig8383.16516.1|Name=mRNA_E_fasciculatus_S2_contig8383.16516.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1999bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8383:4710..6708- (Ectocarpus fasciculatus EfasUO2)
AAACAGTTGAAAACTCTCAGGAAGGAAGCGCGCGCGCGGGAGGGCAAGGT GGTGCAGGAGGTGCTGCGGTCGAGAGACGTCGTGCTGGCCACGTGCGTCG GCGCGGCGACTCACAGCCTGCGAGAGGAAGAGTTCGACCTCGTAGTGATC GACGAGGCTGCCCAGGTGCTTGTCTTTATTGTGTGTGTGCGAGAGTGCCA GCCGCCGGCAATAATTCATGTATTTGCTTCACAAGTTACTTACCATGTGA AAATTATCCTCAGCTTATCCTCGGCTTATCCTCAGCTTATCCTCGGCTTA ACCTCGGCTTAACCTCGGCTTATCCTCGGCTTAACCTCAGCATCCTCGGT TTGAACTCGGTTAAACCTCGGTTTAACTTCAGCTTAACCTAGGTTTAACG TGGGCAACCTCGGCTTATCCTCAACAACCTCAGCTTATCTTCGGCAACCT CGGCTACTTATTCAGAAGTTTTTCTCGTATGAAATATTTAAAATTTACTA TTCGTTAACATTATATGTTAGGTTGTTCCGTCCTCGTCTTCCATCACGCA CGCTGCACGGCGACATTTTATTTTTTCTCCCGCTGAGACTGTTTGTAATG TAACCCCGCGTGCGTTGACGACCACCCTGCAGCAGCCTGGGCTCGGTGGT TTCGTGCGACCAAATGCTGCTATGCATGTGCATACACCATATACCATATA CCCCTGTGTGTTTTCTTGCGGGTGCACGTACTTTTTCGTGTTGCTGCTTT TTTCACGCAGAGGTGGTCGTGCGCACCACGCCACCCAGCTTGGCTGCGAG AAACCCTTCGCTTCCCCCTGCAGACCGAACACCCTGCTCTCTCAGGCATG TATGTTGCTTGCTCACTTCGCCTTGATATTTGTTTGTACGTGCGTGCATC CTGCTTGCTGCCGCGGGTGTCGTCGCTGTCGGTGTGCTGCTCTGCCTCTC CCGCTTCGGGGGGGGCGGGGGTGCGGCCCTTAGGCCCTGGAGGCGGCGTG CTGGATCCCCATCCTCAAAGGAAGGAGGCTGGTCCTCGCCGGGGACCACA AGCAGCTGGCCCCGACGGTCAAGAGCCGGAAGGCGGAGGCCGGTCGTTTG TTGCCGTCCGAAGCGGTATCGGTTCCGCCGCCGCGTTCACCGGGTACACA TGGTGGAAACGGCGAAGATGGTGATGGTGTTGGGACCGGTGTGTTTGACG GTCTCGGGGTGACGATGTTCGACAGGGTGTTGAGGGACCTCGGGCACGGC GTCTGCCGCATGCTCAACGTGCAATACCGGATGAACCGGGACATCTGCGA CTGGGCGTCCGGCGAGGTGGGGGGTCGTATGCATACAGCAGTGTGCGTGC GTGTGTGTTCGAGGATACTAATCTTCGTTTCAGTCGATGGGGTTCGGAAG GAAGAGCCAGAGCGGAGGGTTGAACACCCAACCCACGCCGCTAGGATAGT TTTTTGTTCTCTTGTAATAGTTTTTTTATGGCAGATCTGTGCACCGGTAG AGAACTTCTTGTTTCGGGCTTGCGTCGTCTGCAGCCGGGGAAAGGAGGAG GACCCTGTGCCGCATCGGCCGGCCGGCATCACCACCTCTGACCACAATCA CAATCACAACCTTGTCGTCACGAGATCAGTGATCTCTGATTACGGCTGCC CGCCGGCCTCAATCCCCTCGTCTTACCCCCGTGCGTGCATTTTTTTTTTT GTGTTCGCTACATGTCGTCGTGATGTCGTTACAAACAAAAAAAAAAGATG TACGGCGGGCTACTCCTCGCCCACCCTTCCGTGGCTGAGAGGGAGCTCCC GGACCTACCGCACGCGTCGTTGTCAGCGGCGGGGGCGTCGACGGAGGAGG AGGAGGAGGGCGCCGAGATGTGGGCGGCCGTGATGCTGCTGATCGACACG ACGGGGTGCGACATGCCCGAGGAGGAAGCCGGGGGCGGCAGCCGGAGGAA CGAGCGGGAGGCGGAGGTGGCCCTGCGGCATGTCAAGTGTGTATTGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8383:4710..6708-

>mRNA_E_fasciculatus_S2_contig8383.16516.1 ID=mRNA_E_fasciculatus_S2_contig8383.16516.1|Name=mRNA_E_fasciculatus_S2_contig8383.16516.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=675bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8383:4710..6708- (Ectocarpus fasciculatus EfasUO2)
AAACAGTTGAAAACTCTCAGGAAGGAAGCGCGCGCGCGGGAGGGCAAGGT
GGTGCAGGAGGTGCTGCGGTCGAGAGACGTCGTGCTGGCCACGTGCGTCG
GCGCGGCGACTCACAGCCTGCGAGAGGAAGAGTTCGACCTCGTAGTGATC
GACGAGGCTGCCCAGGCCCTGGAGGCGGCGTGCTGGATCCCCATCCTCAA
AGGAAGGAGGCTGGTCCTCGCCGGGGACCACAAGCAGCTGGCCCCGACGG
TCAAGAGCCGGAAGGCGGAGGCCGATGGTGATGGTGTTGGGACCGGTGTG
TTTGACGGTCTCGGGGTGACGATGTTCGACAGGGTGTTGAGGGACCTCGG
GCACGGCGTCTGCCGCATGCTCAACGTGCAATACCGGATGAACCGGGACA
TCTGCGACTGGGCGTCCGGCGAGATGTACGGCGGGCTACTCCTCGCCCAC
CCTTCCGTGGCTGAGAGGGAGCTCCCGGACCTACCGCACGCGTCGTTGTC
AGCGGCGGGGGCGTCGACGGAGGAGGAGGAGGAGGGCGCCGAGATGTGGG
CGGCCGTGATGCTGCTGATCGACACGACGGGGTGCGACATGCCCGAGGAG
GAAGCCGGGGGCGGCAGCCGGAGGAACGAGCGGGAGGCGGAGGTGGCCCT
GCGGCATGTCAAGTGTGTATTGTAG
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