mRNA_E_fasciculatus_S2_contig8367.16500.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8367.16500.1
Unique NamemRNA_E_fasciculatus_S2_contig8367.16500.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8367.16500.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M4_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.790e-26
Identity = 64/99 (64.65%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:    1 MPQRPNMPDCYAFVKNGCCRFLQNCRYHHPYDRLGMPVPDSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALDAIIGVQDRAPCDVFLNVSFC 297
            MPQRPNMP+C+ FVKNGCCRFL NCRYHHPYDRLGM   DSA XXXXXXXXXXXX                      +DAIIGVQDRAPCD+FLN   C
Sbjct:  181 MPQRPNMPECHGFVKNGCCRFLHNCRYHHPYDRLGMATQDSAGXXXXXXXXXXXXSHENVGGGS------------GVDAIIGVQDRAPCDMFLNSGHC 267
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8367.16500.1 vs.
Match: C3H1-type (domain-containing protein n=1 Tax=Prunus persica TaxID=3760 RepID=A0A251PCN7_PRUPE)

HSP 1 Score: 48.9 bits (115), Expect = 1.760e-5
Identity = 15/36 (41.67%), Postives = 24/36 (66.67%), Query Frame = 1 
Query:    1 MPQRPNMPDCYAFVKNGCCRFLQNCRYHHPYDRLGM 108
            +P+RP  P C  F + G C+F+ NC+YHHP ++  +
Sbjct:   31 LPERPGQPACIYFSRTGDCKFISNCKYHHPKNQTAL 66
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8367.16500.1 vs.
Match: zinc (finger CCCH domain-containing protein 37-like isoform X1 n=2 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092F3253)

HSP 1 Score: 50.8 bits (120), Expect = 3.930e-5
Identity = 17/32 (53.12%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:    4 PQRPNMPDCYAFVKNGCCRFLQNCRYHHPYDR 99
            PQRP   +C  ++KNG C+FL+ C++HHP DR
Sbjct:  375 PQRPGQIECDYYMKNGVCKFLERCKFHHPIDR 406
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8367.16500.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Prunus persica TaxID=3760 RepID=M5WFE3_PRUPE)

HSP 1 Score: 48.9 bits (115), Expect = 5.660e-5
Identity = 15/36 (41.67%), Postives = 24/36 (66.67%), Query Frame = 1 
Query:    1 MPQRPNMPDCYAFVKNGCCRFLQNCRYHHPYDRLGM 108
            +P+RP  P C  F + G C+F+ NC+YHHP ++  +
Sbjct:   40 LPERPGQPACIYFSRTGDCKFISNCKYHHPKNQTAL 75
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8367.16500.1 vs.
Match: C3H1-type (domain-containing protein n=1 Tax=Prunus armeniaca TaxID=36596 RepID=A0A6J5XJ21_PRUAR)

HSP 1 Score: 48.9 bits (115), Expect = 5.930e-5
Identity = 15/36 (41.67%), Postives = 24/36 (66.67%), Query Frame = 1 
Query:    1 MPQRPNMPDCYAFVKNGCCRFLQNCRYHHPYDRLGM 108
            +P+RP  P C  F + G C+F+ NC+YHHP ++  +
Sbjct:   31 LPERPGQPACIYFSRTGDCKFISNCKYHHPKNQTAL 66
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8367.16500.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized2.790e-2664.65protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
C3H1-type1.760e-541.67domain-containing protein n=1 Tax=Prunus persica T... [more]
zinc3.930e-553.13finger CCCH domain-containing protein 37-like isof... [more]
Uncharacterized5.660e-541.67protein (Fragment) n=1 Tax=Prunus persica TaxID=37... [more]
C3H1-type5.930e-541.67domain-containing protein n=1 Tax=Prunus armeniaca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8367contigE_fasciculatus_S2_contig8367:4611..6143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size303
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842495.6292946-CDS-E_fasciculatus_S2_contig8367:4610..48361696842495.6292946-CDS-E_fasciculatus_S2_contig8367:4610..4836Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8367 4611..4836 -
1696842495.6418853-CDS-E_fasciculatus_S2_contig8367:6066..61431696842495.6418853-CDS-E_fasciculatus_S2_contig8367:6066..6143Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8367 6067..6143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8367.16500.1prot_E_fasciculatus_S2_contig8367.16500.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8367 4611..6143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8367.16500.1

>prot_E_fasciculatus_S2_contig8367.16500.1 ID=prot_E_fasciculatus_S2_contig8367.16500.1|Name=mRNA_E_fasciculatus_S2_contig8367.16500.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=101bp
MPQRPNMPDCYAFVKNGCCRFLQNCRYHHPYDRLGMPVPDSAAGGGGGGG
GGGPQRGSSSSHHSHENGGNGGGGGGALDAIIGVQDRAPCDVFLNVSFCF
*
back to top

mRNA from alignment at E_fasciculatus_S2_contig8367:4611..6143-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8367.16500.1 ID=mRNA_E_fasciculatus_S2_contig8367.16500.1|Name=mRNA_E_fasciculatus_S2_contig8367.16500.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1533bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8367:4611..6143- (Ectocarpus fasciculatus EfasUO2)
ATGCCGCAGAGGCCGAACATGCCGGACTGCTACGCCTTCGTGAAGAACGG
ATGCTGCCGGTTCCTCCAAAACTGCAGGTGTGTTGTTGTTTTGTTTTGTC
TGAGGAAGGACCCACGTGCAAAAAGTATGTGTGTCTCTTATGTAGTAGTT
GCATCGACCGCGCTAGGCTAGGTGGTGGCCGACCAATGAGAAAACGACAG
TCTCGGCGCGGTTGAAACACGAAATGCTTCCCAAGGCCATGATCTGGAAC
CGCCGTGAGGGAAAGTCTCCGCTACTTTAGCTGTGCGTGTGTGGTGTCAG
AAAAGAATGTAAACGTATGCCGTAGTTGTTTAATTATGGACCTCGCATCC
CTACAACGCCGGGACGGAGCGACTTGCTTCCGGGGTCCTCGCCGGCCCAG
GCGAGATGAAGCGGCGGGGAGTGAGTACGTTAGGATCTTGACGTCGCATC
TCACAATGCCGGGGCGGAGCGATATGTTTTGCCGAGAGTTCGCCGGTCCG
ACTGGAAGGGACGATGGGAACGAGCGGGCGTCGTGATGTGTGTGTCTTCT
GTCGCGGATGGCGCTCACGTCGCGCGTGTTTACACCTCCCCAGTACGACT
GCTGTCAGAAGCCTCTGTAGGCGTTTTCCCCTTGTGTTGTTTTTGTCTGC
CAAGCAGATATGGATGGCAGGTCAACTACGGCCGGAGGATTCCCCACGGA
TGCCGTCTTTTTTTCGCCCGTTTATTGTGGTTTTGATTGCGACATATTTC
ACCTATTATGAGACAGTTGTATTTTGCGTGGTCGTAGCGGTTGAGACTGT
TCGGGCAGCCGCTCGTTTATATTTTTTTTTTTTTTCGTAGTTGTAACAAA
AACGAATCAATCTCGATCTTATAGAAGAGAATCTTTAAGATAGATCAGCA
ATGAGTCCATCGCGTCAGCGGGAGGCTACGTGCGTTTCCACGATTTGCCG
GGCAGCACACAGCGATATCTCCCCTGCGGTTAACAGGCTCTCAACAAAAC
AGTTTTCAAGCAGCGTTTGACCTCTTGAGAGGTGTTGTTGTTGTCGTCTT
TGCATTAAAAACCACCCCGGTCTCTCTATCCAGTTACAGTACCTCCTTCT
GTCTCATTCTCTCCGTGTTCATCCAGCACTTCGAATCGGTCAGTGTCCGT
GGTCACAGGCTTACGTACCTAGAAAAGGTATACCAAAACATGATGGACCC
CCAAGGGTCAGCATATGCACACGTAAACGTATCGGACTACCAGGGCGTTC
GCGCTCTCTGTGCATGTATGTATGTCATCATTCTCGTGTTCTCAACTCTG
TCCCCAGGTACCACCACCCGTACGACCGACTCGGCATGCCCGTACCAGAC
TCCGCGGCCGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCCCGCAGAGAGG
ATCATCTTCCTCACACCACTCACACGAGAACGGAGGCAACGGCGGCGGCG
GCGGCGGAGCACTGGACGCTATCATCGGCGTGCAGGACCGAGCCCCCTGC
GACGTGTTTCTGAACGTGAGTTTTTGCTTCTAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8367:4611..6143-

>mRNA_E_fasciculatus_S2_contig8367.16500.1 ID=mRNA_E_fasciculatus_S2_contig8367.16500.1|Name=mRNA_E_fasciculatus_S2_contig8367.16500.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=303bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8367:4611..6143- (Ectocarpus fasciculatus EfasUO2)
ATGCCGCAGAGGCCGAACATGCCGGACTGCTACGCCTTCGTGAAGAACGG
ATGCTGCCGGTTCCTCCAAAACTGCAGGTACCACCACCCGTACGACCGAC
TCGGCATGCCCGTACCAGACTCCGCGGCCGGCGGCGGCGGCGGCGGCGGT
GGCGGCGGCCCGCAGAGAGGATCATCTTCCTCACACCACTCACACGAGAA
CGGAGGCAACGGCGGCGGCGGCGGCGGAGCACTGGACGCTATCATCGGCG
TGCAGGACCGAGCCCCCTGCGACGTGTTTCTGAACGTGAGTTTTTGCTTC
TAG
back to top