mRNA_E_fasciculatus_S2_contig8362.16498.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8362.16498.1
Unique NamemRNA_E_fasciculatus_S2_contig8362.16498.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8362.16498.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8362contigE_fasciculatus_S2_contig8362:226..776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size380
Hectar predicted targeting categorymitochondrion
Exons2
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842495.5123312-UTR-E_fasciculatus_S2_contig8362:225..2331696842495.5123312-UTR-E_fasciculatus_S2_contig8362:225..233Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8362 226..233 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842495.5237606-CDS-E_fasciculatus_S2_contig8362:233..4691696842495.5237606-CDS-E_fasciculatus_S2_contig8362:233..469Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8362 234..469 -
1696842495.532803-CDS-E_fasciculatus_S2_contig8362:640..7761696842495.532803-CDS-E_fasciculatus_S2_contig8362:640..776Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8362 641..776 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8362.16498.1prot_E_fasciculatus_S2_contig8362.16498.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8362 234..776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8362.16498.1

>prot_E_fasciculatus_S2_contig8362.16498.1 ID=prot_E_fasciculatus_S2_contig8362.16498.1|Name=mRNA_E_fasciculatus_S2_contig8362.16498.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=124bp
MLPYIVCRLIRHPLYRGKLPLTSRGGANLPQEPRSASESTRKTAAAYVPD
YAQQEEDRGHYREVGSKNEHLTVWQLWGGNARSCRGARSRAAEPWCLESL
CMETLERDRTRTRQRRDYDKEVN*
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mRNA from alignment at E_fasciculatus_S2_contig8362:226..776-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8362.16498.1 ID=mRNA_E_fasciculatus_S2_contig8362.16498.1|Name=mRNA_E_fasciculatus_S2_contig8362.16498.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=551bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8362:226..776- (Ectocarpus fasciculatus EfasUO2)
ATGCTGCCGTATATTGTATGTAGACTGATTCGGCACCCGCTGTATCGAGG
GAAATTGCCCCTTACCAGCAGAGGGGGAGCTAATCTGCCCCAAGAGCCTC
GTAGTGCGAGCGAATCAACCAGAAAAACAGCCGCAGGTAGGTGCTGCTGC
CAACACCTCGCCCCCACGCCCCACGGACCCACGGAACACAGAGAATGGTG
TCAACCCTGTTTTCTGCATACTACGGCAAATTCGTGAGCTCCCACGTCTG
CTGTGCTGCTGTAACCCCCACCTCACCTCCCACCCCCCACGCCCCACGCC
CCCTAAGCTTACGTGCCGGACTACGCCCAGCAGGAAGAGGACAGAGGACA
CTACAGAGAGGTAGGGAGCAAGAACGAGCATCTGACGGTATGGCAACTGT
GGGGGGGGAATGCGCGGAGTTGTCGGGGTGCACGGAGTAGGGCCGCGGAG
CCGTGGTGTTTGGAGTCACTCTGCATGGAAACGCTGGAACGGGATCGAAC
GCGAACAAGGCAGCGACGCGACTACGACAAAGAAGTGAACTAGCTGAGGG
C
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8362:226..776-

>mRNA_E_fasciculatus_S2_contig8362.16498.1 ID=mRNA_E_fasciculatus_S2_contig8362.16498.1|Name=mRNA_E_fasciculatus_S2_contig8362.16498.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=372bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8362:226..776- (Ectocarpus fasciculatus EfasUO2)
ATGCTGCCGTATATTGTATGTAGACTGATTCGGCACCCGCTGTATCGAGG
GAAATTGCCCCTTACCAGCAGAGGGGGAGCTAATCTGCCCCAAGAGCCTC
GTAGTGCGAGCGAATCAACCAGAAAAACAGCCGCAGCTTACGTGCCGGAC
TACGCCCAGCAGGAAGAGGACAGAGGACACTACAGAGAGGTAGGGAGCAA
GAACGAGCATCTGACGGTATGGCAACTGTGGGGGGGGAATGCGCGGAGTT
GTCGGGGTGCACGGAGTAGGGCCGCGGAGCCGTGGTGTTTGGAGTCACTC
TGCATGGAAACGCTGGAACGGGATCGAACGCGAACAAGGCAGCGACGCGA
CTACGACAAAGAAGTGAACTAG
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