mRNA_E_fasciculatus_S2_contig8236.16382.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8236.16382.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG2_ECTSI) HSP 1 Score: 113 bits (282), Expect = 2.530e-31 Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 1
Query: 1 MAQTDRVALLALYHATGGPAWHRNYKWDTTSPISQWHGVTVIDDRVVKLDLPGNNLQGILSPISQAMCLT 210
MAQTDR ALLALYHATGGPAW RNY WDT SPISQW+GVTVI DRVVKL+L NN+QG + P S A+C T
Sbjct: 1 MAQTDRAALLALYHATGGPAWTRNYNWDTDSPISQWYGVTVIGDRVVKLNLMCNNVQGSVGPNSLAVCFT 70
BLAST of mRNA_E_fasciculatus_S2_contig8236.16382.1 vs.
Match: Uncharacterized (protein n=2 Tax=Sediminicola sp. YIK13 TaxID=1453352 RepID=A0A0S1SH81_9FLAO) HSP 1 Score: 69.3 bits (168), Expect = 2.060e-12 Identity = 30/58 (51.72%), Postives = 44/58 (75.86%), Query Frame = 1
Query: 7 QTDRVALLALYHATGGPAWHRNYKWDTTSPISQWHGVTVIDDRVVKLDLPGNNLQGIL 180
Q DR AL+ALY++T G W + WD P+S+W+GVTV++D+VV+++L NNLQG+L
Sbjct: 13 QDDREALVALYNSTNGDEWTKT--WDLNQPVSEWYGVTVVNDKVVEINLFRNNLQGVL 68
BLAST of mRNA_E_fasciculatus_S2_contig8236.16382.1 vs.
Match: Two (component regulator three Y domain protein n=1 Tax=Algibacter alginicilyticus TaxID=1736674 RepID=A0A0P0CFI0_9FLAO) HSP 1 Score: 68.6 bits (166), Expect = 3.770e-12 Identity = 30/57 (52.63%), Postives = 44/57 (77.19%), Query Frame = 1
Query: 10 TDRVALLALYHATGGPAWHRNYKWDTTSPISQWHGVTVIDDRVVKLDLPGNNLQGIL 180
+D+ ALLALY+AT G AW N W+ +P+ W+GVT+ +D+VV+L+LP NNL+G+L
Sbjct: 24 SDKEALLALYNATNGAAW--NSSWNIDNPMDSWYGVTIENDKVVELNLPFNNLEGVL 78
BLAST of mRNA_E_fasciculatus_S2_contig8236.16382.1 vs.
Match: Uncharacterized (protein n=1 Tax=Maribacter hydrothermalis TaxID=1836467 RepID=A0A1B7YYA3_9FLAO) HSP 1 Score: 68.6 bits (166), Expect = 4.340e-12 Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 1
Query: 1 MAQTDRVALLALYHATGGPAWHRNYKWDTTSPISQWHGVTVIDDRVVKLDLPGNNLQGILSP 186
+++T++ AL+ LY A G W + KWD SP+SQW+GVT++DD+VV+++L NNL G +SP
Sbjct: 22 VSKTEKKALIDLYTAANGKHWVK--KWDLKSPVSQWYGVTIVDDKVVEVNLFHNNLMGSISP 81
BLAST of mRNA_E_fasciculatus_S2_contig8236.16382.1 vs.
Match: Uncharacterized (protein n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6L8E3R0_9BACT) HSP 1 Score: 68.2 bits (165), Expect = 6.880e-12 Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 1
Query: 4 AQTDRVALLALYHATGGPAWHRNYKWDTTSPISQWHGVTVIDDRVVKLDL---PGNNLQGILSP 186
A T+R AL+A YHA GGP W W ++ P+ W+GV DDRV KLDL GNNL+G ++P
Sbjct: 44 ATTERDALVAQYHAAGGPDWTDTTNWLSSEPLGTWYGVEAEDDRVTKLDLCGPDGNNLRGTIAP 107
BLAST of mRNA_E_fasciculatus_S2_contig8236.16382.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7Y9R5_9CHLR) HSP 1 Score: 65.9 bits (159), Expect = 9.710e-12 Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 13 DRVALLALYHATGGPAWHRNYKWDTTSPISQWHGV-TVIDDRVVKLDLPGNNLQGILSP 186
DR AL+A YHATGGP W R W + P+ +WHGV T D RV L LPG L+G + P
Sbjct: 54 DREALVAFYHATGGPGWARATNWLSGRPVGEWHGVATDRDGRVTHLTLPGEGLRGEIPP 112
BLAST of mRNA_E_fasciculatus_S2_contig8236.16382.1 vs.
Match: T9SS (C-terminal target domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A3N9NUE1_9BACT) HSP 1 Score: 68.2 bits (165), Expect = 9.880e-12 Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 1
Query: 13 DRVALLALYHATGGPAWHRNYKWDTTSPISQWHGVTVIDDRVVKLDLPGNNLQGIL 180
D +AL+ALY++T G +W N W T P+S WHGVT+ +DRV ++DL GNNL G L
Sbjct: 222 DSLALVALYNSTNGDSWTNNTNW-LTGPVSTWHGVTIEEDRVYRIDLHGNNLVGTL 276
BLAST of mRNA_E_fasciculatus_S2_contig8236.16382.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A352FEI0_9BACT) HSP 1 Score: 64.3 bits (155), Expect = 1.190e-11 Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1
Query: 1 MAQTDRVALLALYHATGGPAWHRNYKWD-TTSPISQWHGVTVIDDRVVKLDLPGNNLQGIL 180
++Q DR AL+ALY+ATGGPAW + W T + + W+GVTV +V K+ L NNL G L
Sbjct: 34 VSQADRDALMALYNATGGPAWTNHTNWGGTAATVGTWYGVTVTSGKVTKVKLTANNLTGSL 94
BLAST of mRNA_E_fasciculatus_S2_contig8236.16382.1 vs.
Match: Two (component regulator three Y domain protein n=1 Tax=Lutibacter sp. TaxID=1925666 RepID=A0A2G2HLE0_9FLAO) HSP 1 Score: 66.2 bits (160), Expect = 2.860e-11 Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 1 MAQTDRVALLALYHATGGPAWHRNYKWDTTSPISQWHGVTVIDDRVVKLDLPGNNLQGIL 180
++++++ L++LY++T G +W N KWD T WHGVT+I+D+VVKL+L NNL G L
Sbjct: 22 ISESEKEVLISLYNSTNGESW--NQKWDLTQSAENWHGVTIINDQVVKLNLSSNNLSGNL 79
BLAST of mRNA_E_fasciculatus_S2_contig8236.16382.1 vs.
Match: Two (component regulator three Y domain protein n=1 Tax=Flavobacteriaceae bacterium LYZ1037 TaxID=2200952 RepID=A0A2U3AXR6_9FLAO) HSP 1 Score: 65.5 bits (158), Expect = 5.170e-11 Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 1 MAQTDRVALLALYHATGGPAWHRNYKWDTTSPISQWHGVTVIDDRVVKLDLPGNNLQGIL 180
+ Q ++ AL+ALY++T G AW N W+ PI W+GVTV++D+V++++L NNLQG L
Sbjct: 21 VTQNEKDALIALYNSTNGDAW--NNSWNLNEPIENWYGVTVVNDKVIEINLHFNNLQGTL 78 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8236.16382.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8236.16382.1 >prot_E_fasciculatus_S2_contig8236.16382.1 ID=prot_E_fasciculatus_S2_contig8236.16382.1|Name=mRNA_E_fasciculatus_S2_contig8236.16382.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=70bp MAQTDRVALLALYHATGGPAWHRNYKWDTTSPISQWHGVTVIDDRVVKLDback to top mRNA from alignment at E_fasciculatus_S2_contig8236:3822..4031- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8236.16382.1 ID=mRNA_E_fasciculatus_S2_contig8236.16382.1|Name=mRNA_E_fasciculatus_S2_contig8236.16382.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=210bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8236:3822..4031- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8236:3822..4031- >mRNA_E_fasciculatus_S2_contig8236.16382.1 ID=mRNA_E_fasciculatus_S2_contig8236.16382.1|Name=mRNA_E_fasciculatus_S2_contig8236.16382.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=210bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8236:3822..4031- (Ectocarpus fasciculatus EfasUO2)back to top |