mRNA_E_fasciculatus_S2_contig8208.16362.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8208.16362.1
Unique NamemRNA_E_fasciculatus_S2_contig8208.16362.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8208.16362.1 vs.
Match: Sterol (or diacylglycerol O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW2_ECTSI)

HSP 1 Score: 460 bits (1183), Expect = 6.340e-152
Identity = 243/307 (79.15%), Postives = 253/307 (82.41%), Query Frame = 1 
Query:    1 GPWWLLAEEPDTMYRLWSTPVHRWVSSCIYRPIVGHKSAAIPQPGCSGGGVRRGLAGTSCRETEEHQQQGDYREEK------------QQQKRWTWRRLVGLASAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVRSIISESAAVSGASGEDEGDRHGTGTPARPEGLPSISAATASQSGATATAGDVSCESTAVETSDGALGDHAEKSYVVVDQARNLGGQNAGTVKNGSDSCGTGGXXXXXXAGRVSNTKKAGREWRGWGAVAFFEGASLVMGLAVDFLMWQWWRRTLLHE 885
            GPWWLLAEEPDTMYRLWSTPVHRWVSSCIYRP+VGHK+AA  QPG SGGGVRRGLAGT CR++EE                       Q Q+RWTWRRL+ L SAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVRSIISESAAVSGASGED GDRHGTG PA    LPS SAAT SQ GATATA DVSC ST VETSDG L DH+EKSYVVVDQAR+LG Q+A T KNGSDSCGTGG      AGRVSNTKKAGREWRGWGAVAFFEGASLVMGLAVDFLMWQWWR TLL+E
Sbjct:  478 GPWWLLAEEPDTMYRLWSTPVHRWVSSCIYRPVVGHKNAAFSQPGRSGGGVRRGLAGTLCRKSEEXXXXXXXXXXXXXXXXXXXXXXXQTQRRWTWRRLLALTSAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVRSIISESAAVSGASGEDSGDRHGTGPPAEQAVLPSSSAATRSQPGATATAADVSCGSTVVETSDGTLEDHSEKSYVVVDQARDLGEQHAITSKNGSDSCGTGGGGGVDGAGRVSNTKKAGREWRGWGAVAFFEGASLVMGLAVDFLMWQWWRHTLLYE 784
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BLAST of mRNA_E_fasciculatus_S2_contig8208.16362.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9L7_9PHAE)

HSP 1 Score: 438 bits (1127), Expect = 1.960e-143
Identity = 235/316 (74.37%), Postives = 243/316 (76.90%), Query Frame = 1 
Query:    1 GPWWLLAEEPDTMYRLWSTPVHRWVSSCIYRPIVGHKSAAIPQPGCSGGGVRRGLAGTSCRETEEHQQQGDYREEKQQQ--------------------KRWTWRRLVGLASAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVRSIISESAAVSGASGEDEGDRHGTGTPARPEGLPSISAATASQSGATATAGDVSCESTAVETSDGALGDHAEKSYVVVDQARNLGGQNAGTVKNGSDS-CGTGGXXXXXXAGRVSNTKKAGREWRGWGAVAFFEGASLVMGLAVDFLMWQWWRRTLLHE 885
            GPWWLLAEEPDTMYRLWSTPVHRWVSSCIYRPIVGHKSAAIPQPGCS GGVRRGLAGTSCRE EEH                                 +RWTWRRL+ L SAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVRSIISESAAVS ASGED G RHGTG PA P   PS SAAT SQ  AT TA D+SC S   ETSDG L DH+E SYVVV+QAR+LG Q+AGT KNG DS CGTGG      AGRVS TKKAG EWRGWGAVAFFEGASLVMGLA DFLMWQWWR TL +E
Sbjct:  477 GPWWLLAEEPDTMYRLWSTPVHRWVSSCIYRPIVGHKSAAIPQPGCSSGGVRRGLAGTSCREPEEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRWTWRRLMALTSAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVRSIISESAAVSAASGEDRGGRHGTGPPAEPALWPSSSAATGSQPCATTTATDISCGSRVAETSDGTLEDHSENSYVVVEQARDLGEQHAGTSKNGGDSSCGTGGGGGVDGAGRVSKTKKAGSEWRGWGAVAFFEGASLVMGLAFDFLMWQWWRHTLSYE 792
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BLAST of mRNA_E_fasciculatus_S2_contig8208.16362.1 vs.
Match: Diacylglycerol (O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV8_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.740e-15
Identity = 94/328 (28.66%), Postives = 135/328 (41.16%), Query Frame = 1 
Query:    1 GPWWLLAEEPDTMYRLWSTPVHRWVSSCIYRPIVG--------HKSAAIPQP--------GCSGG--GVR----RGLAGTSCRETEEHQQQGDYREEKQQQKRWTWRRLVGLASAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVRSIISESA----------AVSGASGEDEGDRHGTGTPARPEGLPSISAATASQSGATATAGDVSCESTAVETSDGALGDHAEKSYVVVDQARNLGGQNAGTVKNGSDSCGTGGXXXXXXAGRVSNTK-KAGREWRGWGAVAFFEGASLVMGLAVDFLMWQWWRRTLLHE 885
            GPWWL+ ++    +RLWS PVHRW+S  + RP++         H+   + +         G SGG  GV     +G + T+  +       G          RW W  L  +  +FL S +VHEAV FVAMRRT WP STF L ++  +   WD ++PV +  S             +++ A G+  G    T   A    +P  +                         +DG    H  K     D A   G     T + GS++            GR    + K GR  RGW AV  + G  + + L VD+ +WQWWR T + E
Sbjct:  441 GPWWLVVDDVRDYFRLWSAPVHRWLSESVQRPMIEVGQREALRHRRRRVAREEDKPPATNGNSGGSNGVHDYRPKGTSSTTGGKARHGADAGIV-------TRW-W--LASVVCSFLVSGVVHEAVGFVAMRRTVWPFSTFFLAVTASMAPFWDTLFPVVADTSTPGTRPTGRRAFTSIAAAGGDGVGFSAETEA-ANSAAVPRTAXXXXXXXXXXXXXXXXXXXXXXXXAADGQHAGHPSK-----DVANKNG---VVTGQQGSEA---------PRLGRKEPLRPKIGRR-RGWAAVVVYGGMYMPLTLVVDYCVWQWWRHTHMAE 739
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8208.16362.1 vs.
Match: Sterol (or diacylglycerol O-acyltransferase, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUK9_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.950e-15
Identity = 50/155 (32.26%), Postives = 80/155 (51.61%), Query Frame = 1 
Query:    1 GPWWLLAEEPDTMYRLWSTPVHRWVSSCIYRPIVGHKSAAIPQPGCSGGGVRRGLAGTSCRETEE-----HQQQGDYREEKQQQKRWTWRRLVGLASAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVRSIISESAAVSGA 450
            G WWLL +EP    R+WSTPVHRW+S+C++ P++   S +             G+ GT    + E      +  GD         +WTW  +  + + F+ S + HEAV ++AMR TCWP +TF L +   ++  WD ++P+  +   S +  G+
Sbjct:  341 GCWWLLFDEPRDFLRMWSTPVHRWLSTCVHWPMLELCSTSD-----------EGVDGTKSPPSAELSTATAEVAGD-------PSKWTW--VPAVLATFVVSGVFHEAVVYIAMRGTCWPFNTFLLCVGGVLVIFWDIVFPLPDLKPSSESEGGS 475
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8208.16362.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Sterol6.340e-15279.15or diacylglycerol O-acyltransferase n=1 Tax=Ectoca... [more]
Uncharacterized1.960e-14374.37protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Diacylglycerol1.740e-1528.66O-acyltransferase n=1 Tax=Ectocarpus siliculosus T... [more]
Sterol2.950e-1532.26or diacylglycerol O-acyltransferase, partial n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8208contigE_fasciculatus_S2_contig8208:147..1530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1384
Hectar predicted targeting categorysignal anchor
Exons1
Ec32 ortholog descriptionsterol or diacylglycerol O-acyltransferase
Ec32 orthologEc-02_003110.1
Cds size855
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842482.2143514-UTR-E_fasciculatus_S2_contig8208:146..1821696842482.2143514-UTR-E_fasciculatus_S2_contig8208:146..182Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8208 147..182 +
1696842482.2362268-UTR-E_fasciculatus_S2_contig8208:1037..15301696842482.2362268-UTR-E_fasciculatus_S2_contig8208:1037..1530Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8208 1038..1530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842482.226011-CDS-E_fasciculatus_S2_contig8208:182..10371696842482.226011-CDS-E_fasciculatus_S2_contig8208:182..1037Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8208 183..1037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8208.16362.1prot_E_fasciculatus_S2_contig8208.16362.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8208 183..1037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8208.16362.1

>prot_E_fasciculatus_S2_contig8208.16362.1 ID=prot_E_fasciculatus_S2_contig8208.16362.1|Name=mRNA_E_fasciculatus_S2_contig8208.16362.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=285bp
MYRLWSTPVHRWVSSCIYRPIVGHKSAAIPQPGCSGGGVRRGLAGTSCRE
TEEHQQQGDYREEKQQQKRWTWRRLVGLASAFLFSSLVHEAVTFVAMRRT
CWPVSTFSLVLSIFVISGWDAMYPVRSIISESAAVSGASGEDEGDRHGTG
TPARPEGLPSISAATASQSGATATAGDVSCESTAVETSDGALGDHAEKSY
VVVDQARNLGGQNAGTVKNGSDSCGTGGGGGGDGAGRVSNTKKAGREWRG
WGAVAFFEGASLVMGLAVDFLMWQWWRRTLLHEH*
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mRNA from alignment at E_fasciculatus_S2_contig8208:147..1530+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8208.16362.1 ID=mRNA_E_fasciculatus_S2_contig8208.16362.1|Name=mRNA_E_fasciculatus_S2_contig8208.16362.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1384bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8208:147..1530+ (Ectocarpus fasciculatus EfasUO2)
GGGCCGTGGTGGCTTCTCGCTGAGGAGCCCGATACCATGTACCGCCTGTG
GTCCACGCCCGTCCATCGGTGGGTGTCGTCGTGCATATACAGGCCTATTG
TTGGCCACAAGAGCGCTGCTATCCCCCAACCGGGGTGTAGTGGTGGTGGG
GTCCGCCGGGGATTGGCTGGAACATCGTGTAGAGAAACGGAGGAGCACCA
GCAGCAAGGAGACTACAGGGAGGAGAAGCAGCAGCAGAAGAGGTGGACGT
GGCGGAGGCTGGTGGGGTTGGCCTCCGCCTTCTTGTTCTCGAGCCTTGTC
CATGAGGCGGTCACCTTCGTCGCGATGCGCCGGACGTGCTGGCCGGTGAG
CACGTTCTCCCTCGTCCTCTCCATCTTCGTCATCTCCGGGTGGGACGCCA
TGTACCCCGTCAGGAGCATCATCTCCGAAAGCGCGGCGGTTTCCGGGGCC
TCCGGCGAAGACGAGGGCGATCGTCACGGGACTGGAACTCCGGCACGGCC
AGAAGGTTTGCCGTCGATTTCGGCGGCTACAGCATCGCAGTCGGGCGCAA
CTGCCACTGCGGGGGACGTCTCCTGTGAATCGACAGCGGTGGAAACGTCA
GACGGGGCCTTGGGAGATCATGCCGAGAAATCATATGTTGTGGTTGACCA
AGCGCGGAATCTGGGAGGGCAAAATGCCGGCACCGTCAAGAACGGTAGCG
ATAGTTGCGGCACTGGCGGTGGCGGGGGTGGTGATGGTGCCGGGCGGGTT
TCCAACACGAAAAAGGCTGGCAGAGAGTGGCGGGGTTGGGGTGCGGTGGC
CTTTTTTGAGGGCGCGTCTCTTGTGATGGGGCTTGCCGTTGATTTCCTTA
TGTGGCAGTGGTGGCGACGCACGCTGTTGCACGAGCACTGATCAATGTGG
CGACGGGGTCTCTTGTCTCCTGTGTTTTGCGCCGCTTTGGCGGCGACGCG
TACTGTTTCGTGCCACTGGAGAGAATCACGCTGGACTGCTTCCGAGCAAT
GTGTCTATGCGACGTTTTGCTTCGCCTGTCTTGGTTGTGTGCAGGATTGC
ACCCACCTAGGTTGTACGCGTTTTTTGCAGGGAGGTAGATGTGGGTCGCT
CTCTTCTCATCTATGTTCCATATTCGGCCAGATATTTATTCCTCGTTCGA
AGGCTTCCATCAGACTACTCACTCAGCGCTGAATCAGTATCTAGTCTAAT
GGATAAGATTTTCGAACAAAATGTGTACTCTCGGCTCGTAGCCACCAGGC
TGGTCACTGGGATTTAGAAGTACTGTAGGGTTCTCCGGGGACGGACCCCT
TCGCCAGGCGCTGCGCGAAAATGAACTAATGGTGCTTTGTAAAGTGACCA
GCCGGGATTCAATGGATAAGCCTATCTAACATTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8208:147..1530+

>mRNA_E_fasciculatus_S2_contig8208.16362.1 ID=mRNA_E_fasciculatus_S2_contig8208.16362.1|Name=mRNA_E_fasciculatus_S2_contig8208.16362.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=855bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8208:147..1530+ (Ectocarpus fasciculatus EfasUO2)
ATGTACCGCCTGTGGTCCACGCCCGTCCATCGGTGGGTGTCGTCGTGCAT
ATACAGGCCTATTGTTGGCCACAAGAGCGCTGCTATCCCCCAACCGGGGT
GTAGTGGTGGTGGGGTCCGCCGGGGATTGGCTGGAACATCGTGTAGAGAA
ACGGAGGAGCACCAGCAGCAAGGAGACTACAGGGAGGAGAAGCAGCAGCA
GAAGAGGTGGACGTGGCGGAGGCTGGTGGGGTTGGCCTCCGCCTTCTTGT
TCTCGAGCCTTGTCCATGAGGCGGTCACCTTCGTCGCGATGCGCCGGACG
TGCTGGCCGGTGAGCACGTTCTCCCTCGTCCTCTCCATCTTCGTCATCTC
CGGGTGGGACGCCATGTACCCCGTCAGGAGCATCATCTCCGAAAGCGCGG
CGGTTTCCGGGGCCTCCGGCGAAGACGAGGGCGATCGTCACGGGACTGGA
ACTCCGGCACGGCCAGAAGGTTTGCCGTCGATTTCGGCGGCTACAGCATC
GCAGTCGGGCGCAACTGCCACTGCGGGGGACGTCTCCTGTGAATCGACAG
CGGTGGAAACGTCAGACGGGGCCTTGGGAGATCATGCCGAGAAATCATAT
GTTGTGGTTGACCAAGCGCGGAATCTGGGAGGGCAAAATGCCGGCACCGT
CAAGAACGGTAGCGATAGTTGCGGCACTGGCGGTGGCGGGGGTGGTGATG
GTGCCGGGCGGGTTTCCAACACGAAAAAGGCTGGCAGAGAGTGGCGGGGT
TGGGGTGCGGTGGCCTTTTTTGAGGGCGCGTCTCTTGTGATGGGGCTTGC
CGTTGATTTCCTTATGTGGCAGTGGTGGCGACGCACGCTGTTGCACGAGC
ACTGA
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