mRNA_E_fasciculatus_S2_contig818.16331.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig818.16331.1 vs.
Match: Toprim (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK3_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 8.820e-10 Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 2
Query: 50 GKAISWHLLQVLQLKVPVKRAVFHEITQETPVKAFEDR 163
G+AISWHLLQVL+ KVPVKRAVFHEITQE VKAFE R
Sbjct: 207 GEAISWHLLQVLEPKVPVKRAVFHEITQEALVKAFEVR 244
BLAST of mRNA_E_fasciculatus_S2_contig818.16331.1 vs.
Match: DNA (topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 2.260e-9 Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 2
Query: 50 GKAISWHLLQVLQLKVPVKRAVFHEITQETPVKAFED 160
G+AISWHLLQVL+ KVPVKRAVFHEITQE VKAFE+
Sbjct: 201 GEAISWHLLQVLEPKVPVKRAVFHEITQEALVKAFEE 237
BLAST of mRNA_E_fasciculatus_S2_contig818.16331.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G721_ECTSI) HSP 1 Score: 58.5 bits (140), Expect = 4.130e-7 Identity = 31/45 (68.89%), Postives = 35/45 (77.78%), Query Frame = 3
Query: 51 GRPSAGTCCRSCN*KFRSRGRYSTKSPRKHQSRRSRTEWRDLVQA 185
GRPSAG+ CRS N KFRSRGR ST SPR+H SRRSR + LV+A
Sbjct: 8 GRPSAGSSCRSWNRKFRSRGRCSTTSPRRHSSRRSRESTQQLVEA 52
BLAST of mRNA_E_fasciculatus_S2_contig818.16331.1 vs.
Match: DNA (topoisomerase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XMQ1_GALSU) HSP 1 Score: 57.0 bits (136), Expect = 1.430e-6 Identity = 25/37 (67.57%), Postives = 33/37 (89.19%), Query Frame = 2
Query: 50 GKAISWHLLQVLQLKVPVKRAVFHEITQETPVKAFED 160
G+AI+WHL+QVLQ KVP KRAVFHEIT+E +++FE+
Sbjct: 204 GEAIAWHLVQVLQPKVPYKRAVFHEITKEAIIESFEN 240
BLAST of mRNA_E_fasciculatus_S2_contig818.16331.1 vs.
Match: type (I DNA topoisomerase n=1 Tax=Oscillatoria sp. PCC 10802 TaxID=1173028 RepID=UPI000477F62F) HSP 1 Score: 56.2 bits (134), Expect = 2.630e-6 Identity = 29/51 (56.86%), Postives = 33/51 (64.71%), Query Frame = 2
Query: 8 GRDFPALPPMRTERGKAISWHLLQVLQLKVPVKRAVFHEITQETPVKAFED 160
G D L G++ISWHLLQVLQ KVPVKR VFHEITQE +A +
Sbjct: 86 GADELILATDEDREGESISWHLLQVLQPKVPVKRMVFHEITQEAIQEALNN 136
BLAST of mRNA_E_fasciculatus_S2_contig818.16331.1 vs.
Match: DNA (topoisomerase 1 n=1 Tax=Hyella patelloides LEGE 07179 TaxID=945734 RepID=A0A563VNX4_9CYAN) HSP 1 Score: 55.8 bits (133), Expect = 3.600e-6 Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 2
Query: 50 GKAISWHLLQVLQLKVPVKRAVFHEITQETPVKAFED 160
G++ISWHLL++L+ KVPVKR VFHEITQE KA +D
Sbjct: 100 GESISWHLLEILKPKVPVKRMVFHEITQEAIQKALDD 136
BLAST of mRNA_E_fasciculatus_S2_contig818.16331.1 vs.
Match: DNA (topoisomerase 1 n=16 Tax=Pseudoclavibacter TaxID=255204 RepID=A0A2S5X998_9MICO) HSP 1 Score: 55.8 bits (133), Expect = 3.620e-6 Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 2
Query: 50 GKAISWHLLQVLQLKVPVKRAVFHEITQETPVKAFEDRV 166
G+AI+WHLLQVLQ KVPVKR VFHEIT+E ++A +DR
Sbjct: 132 GEAIAWHLLQVLQPKVPVKRMVFHEITREA-IEAAKDRT 169
BLAST of mRNA_E_fasciculatus_S2_contig818.16331.1 vs.
Match: DNA (topoisomerase 1 n=1 Tax=Merismopedia glauca CCAP 1448/3 TaxID=1296344 RepID=A0A2T1C480_9CYAN) HSP 1 Score: 55.5 bits (132), Expect = 4.860e-6 Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 2
Query: 50 GKAISWHLLQVLQLKVPVKRAVFHEITQETPVKAFED 160
G++ISWHLLQ+L+ K+P+KR VFHEITQE KA +D
Sbjct: 100 GESISWHLLQILKPKIPIKRMVFHEITQEAIRKALKD 136
BLAST of mRNA_E_fasciculatus_S2_contig818.16331.1 vs.
Match: DNA (topoisomerase 1 n=7 Tax=unclassified Cryobacterium TaxID=2649013 RepID=A0A4R8WGV8_9MICO) HSP 1 Score: 55.5 bits (132), Expect = 4.920e-6 Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 2
Query: 50 GKAISWHLLQVLQLKVPVKRAVFHEITQETPVKAFED 160
G+AI+WHLLQVLQ KVPVKR VFHEIT+E +KA ++
Sbjct: 102 GEAIAWHLLQVLQPKVPVKRMVFHEITKEAILKAKDN 138
BLAST of mRNA_E_fasciculatus_S2_contig818.16331.1 vs.
Match: DNA (topoisomerase 1 n=30 Tax=Cryobacterium TaxID=69578 RepID=A0A4R8XU89_9MICO) HSP 1 Score: 55.5 bits (132), Expect = 4.930e-6 Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 2
Query: 50 GKAISWHLLQVLQLKVPVKRAVFHEITQETPVKAFED 160
G+AI+WHLLQVLQ KVPVKR VFHEIT+E +KA ++
Sbjct: 102 GEAIAWHLLQVLQPKVPVKRMVFHEITKEAILKAKDN 138 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig818.16331.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig818.16331.1 >prot_E_fasciculatus_S2_contig818.16331.1 ID=prot_E_fasciculatus_S2_contig818.16331.1|Name=mRNA_E_fasciculatus_S2_contig818.16331.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=89bp QGGTRFSCITTDEDREGEGHQLAPVAGPATESSGQEGGIPRNHPGNTSQGback to top mRNA from alignment at E_fasciculatus_S2_contig818:21418..27095+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig818.16331.1 ID=mRNA_E_fasciculatus_S2_contig818.16331.1|Name=mRNA_E_fasciculatus_S2_contig818.16331.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5678bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig818:21418..27095+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig818:21418..27095+ >mRNA_E_fasciculatus_S2_contig818.16331.1 ID=mRNA_E_fasciculatus_S2_contig818.16331.1|Name=mRNA_E_fasciculatus_S2_contig818.16331.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=267bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig818:21418..27095+ (Ectocarpus fasciculatus EfasUO2)back to top |