mRNA_E_fasciculatus_S2_contig8178.16329.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8178.16329.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB6_ECTSI) HSP 1 Score: 411 bits (1057), Expect = 4.460e-144 Identity = 188/200 (94.00%), Postives = 194/200 (97.00%), Query Frame = 1
Query: 1 QACCLICVKDDPVPGSKLDAFYGNPNQFQIGMMEAPCKNCPWFCFGCLCTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSASRMYLMDKFSVTPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADIVYMTTVGCMTGQMMYEMEYQASVAPKREVITGR 600
ACCLICVKDDPVPGSKLD FYGNPNQFQIG+MEAPCKNCPWFCFGCLCTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVS+SRMYLMDKFSV PDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIAD+VYMTTVGCMTGQM+YEM+YQASVAPK + I GR
Sbjct: 1 MACCLICVKDDPVPGSKLDPFYGNPNQFQIGLMEAPCKNCPWFCFGCLCTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSSSRMYLMDKFSVMPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADLVYMTTVGCMTGQMIYEMDYQASVAPKAQAIAGR 200
BLAST of mRNA_E_fasciculatus_S2_contig8178.16329.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB5_ECTSI) HSP 1 Score: 331 bits (849), Expect = 1.270e-112 Identity = 148/177 (83.62%), Postives = 160/177 (90.40%), Query Frame = 1
Query: 1 QACCLICVKDDPVPGSKLDAFYGNPNQFQIGMMEAPCKNCPWFCFGCLCTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSASRMYLMDKFSVTPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADIVYMTTVGCMT 531
ACCLICV D+PVPGSKLDA+Y NPN+FQIGMMEAPCKNCPW FGCLC CCAQFIVRKRALDGNL NY+CCQGY+PMCC GDCGER CPCFCLC+ESF C SCAVS+SRMYLMDKF V PDPWDNRIIRFNN LQ+LSCIC+IAAIC+ E+RELARIIDLIAD+VYMTTVGCMT
Sbjct: 1 MACCLICVNDEPVPGSKLDAYYENPNKFQIGMMEAPCKNCPWCTFGCLCMCCAQFIVRKRALDGNLANYVCCQGYFPMCCFEPGDCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPDPWDNRIIRFNNALQVLSCICHIAAICVREVRELARIIDLIADLVYMTTVGCMT 177
BLAST of mRNA_E_fasciculatus_S2_contig8178.16329.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZB7_ECTSI) HSP 1 Score: 314 bits (805), Expect = 2.190e-105 Identity = 144/200 (72.00%), Postives = 166/200 (83.00%), Query Frame = 1
Query: 1 QACCLICVKDDPVPGSKLDAFYGNPNQFQIGMMEAPCKNCPWFCFGCLCTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSASRMYLMDKFSVTPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADIVYMTTVGCMTGQMMYEMEYQASVAPKREVITGR 600
ACCLICVKDDPVPGSKLDA+YGNPNQFQIGMMEAPCK W +G LC CAQF VRKRAL G L++Y+CCQGY+P C GDCGER CPCFCLC+ESF C SCAVS+SRMYLMDKF V PDPWDNRIIRFNN LQLLSCIC+ AAI +++ RELAR+ D++A++VY++ VGCMTGQMM EMEYQ +P+ + ITGR
Sbjct: 1 MACCLICVKDDPVPGSKLDAYYGNPNQFQIGMMEAPCKTFLWCAYGSLCLGCAQFAVRKRALGGRLDDYVCCQGYFPTHCCEPGDCGERRCPCFCLCMESFLCPSCAVSSSRMYLMDKFEVQPDPWDNRIIRFNNCLQLLSCICHCAAIFVQDFRELARLTDVLANLVYLSAVGCMTGQMMAEMEYQEGTSPEAQCITGR 200
BLAST of mRNA_E_fasciculatus_S2_contig8178.16329.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWZ0_9STRA) HSP 1 Score: 306 bits (783), Expect = 2.260e-102 Identity = 141/198 (71.21%), Postives = 165/198 (83.33%), Query Frame = 1
Query: 1 QACCLICVKDDPVPGSKLDAFYGNPNQFQIGMMEAPCKNCPWFCFGCLCTCCAQFIVRKRALDGNLENYLCCQGYYP-MCCMSAGDCGERSCPCFCLCLESFCCNSCAVSASRMYLMDKFSVTPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADIVYMTTVGCMTGQMMYEMEYQASVAPKREVI 591
ACCLIC D+PV GSKL+ FYGN QFQIGMMEAPCK C+G LC+CCAQ+ VRKRALDGNL+NY+CCQGY+P CCM G CGE+S P CLCLESFCC SCAVS+SRM++MDK+ + PDPWDNRIIRFNN LQLLSCICN AIC+EE+RE ARI+DLIA+IV+ TTVGCMTGQMM+E++YQ ++APK E I
Sbjct: 1 MACCLICFSDEPVRGSKLEQFYGNNQQFQIGMMEAPCKATLCCCYGSLCSCCAQYTVRKRALDGNLDNYICCQGYFPGCCCMKPGHCGEKSSPACCLCLESFCCLSCAVSSSRMFIMDKYRLLPDPWDNRIIRFNNALQLLSCICNCLAICVEELREFARILDLIAEIVFYTTVGCMTGQMMHELDYQQNMAPKAEAI 198
BLAST of mRNA_E_fasciculatus_S2_contig8178.16329.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXW4_9STRA) HSP 1 Score: 204 bits (518), Expect = 8.890e-62 Identity = 96/190 (50.53%), Postives = 128/190 (67.37%), Query Frame = 1
Query: 1 QACCLICVKDDPVPGSKLDAFYG-NPNQFQIGMMEAPCKNCPWFCFGCL-CTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSASRMYLMDKFSVTPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADIVYMTTVGCMTGQMMYEMEYQA 564
CCL+C DDP+ G K YG NPN FQ+ + +A C P C G C CCAQ+ +RK+AL+ ++ NY CCQGYY C AG+ GE SCP CLCLE++CC SCAVS++RM +MD + + DPWD RIIRFNNF Q+LSC+C I A+ +++ A +I LIA+ VY + CMT Q+ +E++YQA
Sbjct: 1 MVCCLLCFSDDPIEGDK----YGQNPNTFQVSLKDAACAE-PACCIGTFFCPCCAQYYIRKKALNDDMSNYTCCQGYYDCACFKAGNLGESSCPELCLCLEAYCCESCAVSSTRMLVMDTYMLASDPWDRRIIRFNNFCQVLSCVCQILAMVEPSLQDCAELIRLIAECVYYSVQACMTSQVHHELKYQA 185
BLAST of mRNA_E_fasciculatus_S2_contig8178.16329.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXX8_9STRA) HSP 1 Score: 199 bits (507), Expect = 3.160e-60 Identity = 98/185 (52.97%), Postives = 124/185 (67.03%), Query Frame = 1
Query: 10 CLICVKDDPVPGSKLDAFYGNPNQFQIGMMEAPCKNCPWFCFGCLCTC-CAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSASRMYLMDKFSVTPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADIVYMTTVGCMTGQMMYEMEYQ 561
C IC D P+ G K F N FQ+ M + PC+ P C G C CAQ++VRK+ALDG++ NY CCQGYY C AG CGE SCP CLCLE+ CNSCAVS++RM +MD + + DPWD RIIRFNN +Q+LSCIC+IAAI +R+ A +ID IAD VY + CMT Q+ +E++YQ
Sbjct: 3 CCICFDDGPIEGDKYGQF---SNTFQLSMADVPCQQ-PACCLGAFFCCPCAQYMVRKKALDGDMTNYKCCQGYYDCLCFKAGHCGEESCPDVCLCLEAVFCNSCAVSSTRMLVMDTYFLQSDPWDRRIIRFNNCMQMLSCICHIAAIIDPSLRDCAVLIDRIADCVYYSVQACMTAQVNFELDYQ 183
BLAST of mRNA_E_fasciculatus_S2_contig8178.16329.1 vs.
Match: Uncharacterized (protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GIB4_9STRA) HSP 1 Score: 198 bits (503), Expect = 2.660e-59 Identity = 97/191 (50.79%), Postives = 129/191 (67.54%), Query Frame = 1
Query: 4 ACCLICVKDDPVPGSKLDAFYGNPNQFQIGMMEAPCKNCPWFCFGCLCTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSASRMYLMDKFSVTPDPWDNRIIRFNNFLQLLSCICNIAAICIEEI-----RELARIIDLIADIVYMTTVGCMTGQMMYEMEYQ 561
ACC C DDPV D + N++++ M +AP + W C+G C CA + +R RAL N+ NY CCQGY CC+S G+ GE +CP FCLC+E CC SC++SA+R +MD++S+ DP DNRIIRFNNF+Q+LSC+ N+ +ICIEE+ RE A+I+DLIA IVYM T GCM QM EME++
Sbjct: 6 ACCF-CFPDDPVED---DPRIQHANRWKVLMKDAPTEETLWCCYGAFCPVCAAYQLRTRALGYNMNNYRCCQGYLQFCCISPGNMGEENCPEFCLCMEVCCCLSCSISATRFMIMDQYSIVSDPCDNRIIRFNNFMQILSCVLNLLSICIEELYVRIFREAAQIVDLIAKIVYMVTFGCMAAQMKSEMEFR 192
BLAST of mRNA_E_fasciculatus_S2_contig8178.16329.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EEY5_BRELC) HSP 1 Score: 192 bits (487), Expect = 1.490e-57 Identity = 95/184 (51.63%), Postives = 125/184 (67.93%), Query Frame = 1
Query: 10 CLICVKDDPVPGSKLDAFYGNPNQFQIGMMEAPCKNCPWFCFG-CLCTCCAQFIVRKRALDGNLENYLCCQGYYP--MCCMSAGDCGERSCPCFCLCLESFCCNSCAVSASRMYLMDKFSVTPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADIVYMTTVGCMTGQMMYEM 552
C++C DPV D NP FQ+GMM AP + P C CLC CCAQ ++R++AL+ ++ NY CCQGY + C +G CGE SCP FCLCLESFCCN CAVSA+RM +MD++ + PD WDNRIIR NN +QL+SC+C++ +ICI E+ +LA ++ IA Y TT GCMT Q+ E+
Sbjct: 2 CILC-SGDPVED---DVRKNNPGSFQVGMMHAPGAD-PLCCMSACLCPCCAQIVIRRKALNYDMSNYTCCQGYMDGLVPCARSGQCGESSCPNFCLCLESFCCNGCAVSATRMLVMDRYRLQPDKWDNRIIRCNNCIQLVSCVCSLLSICISELGDLADLMYCIAQCTYATTQGCMTAQVNVEL 180
BLAST of mRNA_E_fasciculatus_S2_contig8178.16329.1 vs.
Match: Uncharacterized (protein n=3 Tax=Albugo candida TaxID=65357 RepID=A0A024G979_9STRA) HSP 1 Score: 184 bits (467), Expect = 1.540e-54 Identity = 95/194 (48.97%), Postives = 126/194 (64.95%), Query Frame = 1
Query: 10 CLICVKDDPVPGSKLDAFYGNPNQFQIGMMEAPCKNCPWFCFG-CLCTCCAQFIVRKRALDGNLENYLCCQGYYP--MCCMSAGDCGERSCPCFCLCLESFCCNSCAVSASRMYLMDKFSVTPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADIVYMTTVGCMTGQMMYEME----YQASV 570
C++C PV G D N N+F +GMM APC + P C C C CCAQ+I+R++ALD ++ Y+C QGY + C+ +G CGERSCP CLCLES+ CN CAVSA+RM +MD++++ PD WDNRIIR NN +QLLSC+C+ AICI E+ A YMTT GCMT Q+ E++ Y+A+V
Sbjct: 2 CILC-SGSPVDG---DVRGQNSNEFMVGMMSAPCSS-PCCCLASCFCPCCAQYIIRRKALDNDMSKYVCFQGYLDGVIPCLRSGQCGERSCPHCCLCLESWLCNGCAVSATRMLVMDRYNLRPDKWDNRIIRCNNCIQLLSCVCSCLAICISELGNXXXXXXXXAQCTYMTTQGCMTAQVNVELKRRKNYRAAV 190
BLAST of mRNA_E_fasciculatus_S2_contig8178.16329.1 vs.
Match: Splicing (factor 3 subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B380_PLAHL) HSP 1 Score: 184 bits (467), Expect = 2.960e-54 Identity = 92/179 (51.40%), Postives = 121/179 (67.60%), Query Frame = 1
Query: 10 CLICVKDDPVPGSKLDAFYGNPNQFQIGMMEAPCKNCPWFCFG-CLCTCCAQFIVRKRALDGNLENYLCCQGYYP--MCCMSAGDCGERSCPCFCLCLESFCCNSCAVSASRMYLMDKFSVTPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADIVYMTTVGCMTGQ 537
C++C DPV D NP F +GMM AP + P C CLC CCAQ I+R++AL+ ++ NY CCQGY + C+ +G CGE +CP CLCLESFCCN CAVSA+RM +MD++ + PD WDNRIIR NN +QL+SC+C++ +ICI E+ +LA ++ IA Y TT GCMT Q
Sbjct: 2 CILC-SGDPVED---DVRKNNPGTFHVGMMHAPGAD-PLCCLSSCLCPCCAQVIIRRKALNYDMSNYTCCQGYMDGVVPCVRSGSCGESNCPNCCLCLESFCCNGCAVSATRMLVMDRYRLQPDKWDNRIIRCNNCIQLVSCVCSLLSICISELGDLADLMYCIAQCTYATTQGCMTAQ 175 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8178.16329.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8178.16329.1 >prot_E_fasciculatus_S2_contig8178.16329.1 ID=prot_E_fasciculatus_S2_contig8178.16329.1|Name=mRNA_E_fasciculatus_S2_contig8178.16329.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=170bp MMEAPCKNCPWFCFGCLCTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMback to top mRNA from alignment at E_fasciculatus_S2_contig8178:31..4365- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8178.16329.1 ID=mRNA_E_fasciculatus_S2_contig8178.16329.1|Name=mRNA_E_fasciculatus_S2_contig8178.16329.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4335bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8178:31..4365- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8178:31..4365- >mRNA_E_fasciculatus_S2_contig8178.16329.1 ID=mRNA_E_fasciculatus_S2_contig8178.16329.1|Name=mRNA_E_fasciculatus_S2_contig8178.16329.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=510bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8178:31..4365- (Ectocarpus fasciculatus EfasUO2)back to top |