mRNA_E_fasciculatus_S2_contig817.16324.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig817.16324.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI) HSP 1 Score: 520 bits (1340), Expect = 4.180e-158 Identity = 273/324 (84.26%), Postives = 284/324 (87.65%), Query Frame = 2
Query: 56 QSETCGGVHSFNLYRLSWAPASEDKEYVGCYADDKGDRVLSDMISSDDMTAAVCREHCADKGAPYYSTQFSNECWCGTSDNEADYERHGEGVCHMGCSGDGTVACGGYNAYSLFKYDNGGETPTTAPVTDSPGTPTMAPVM-GXXXXXXXXXXXPVRTEEPTATATSAPTSAGGSMPTTSTCSNGVPGIETSKGACCAAACGQCGGAGCSTVALSLGLGSDECCESAVLDANRPWGEAPCVIGGDVPAPTPSPDTAAPVAXXXXXXVSTAPTGDCSGEPVEAWEQCGGDGWTGSTCCEEGLECVIMGKSTCYSQCRPVITGDYR 1024
+SETCGGVHSFNLYRLSWAPA ED+EYVGCY D+KGDRVLSDMISSDDMTAAVCREHCADK APYY TQFS+ECWCGTSD++ADYERHGEGVCHM CSGDGTVACGGY+AYSLFKYDNGGE PTTAPVTDSP TPTMAP XXXXXXXXXXX GGSMPTTSTCSNGVPGIETSKGACC AACGQCGG GCSTVA L LGSDECCE+AVLDANRP GEAPCVIGGD PAPTPSP+TAAPV XXXXXXVSTAPTG+CSGEPVEAWEQCGGDGWTGSTCCEEGLECV MGKSTCYSQCRP + GDYR
Sbjct: 1222 ESETCGGVHSFNLYRLSWAPAPEDEEYVGCYTDNKGDRVLSDMISSDDMTAAVCREHCADKDAPYYGTQFSSECWCGTSDDDADYERHGEGVCHMACSGDGTVACGGYDAYSLFKYDNGGEAPTTAPVTDSPDTPTMAPTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSMPTTSTCSNGVPGIETSKGACCVAACGQCGGDGCSTVASDLELGSDECCETAVLDANRPCGEAPCVIGGDFPAPTPSPETAAPVXXXXXXXVSTAPTGECSGEPVEAWEQCGGDGWTGSTCCEEGLECVFMGKSTCYSQCRP-MEGDYR 1544
BLAST of mRNA_E_fasciculatus_S2_contig817.16324.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE) HSP 1 Score: 511 bits (1317), Expect = 7.630e-158 Identity = 256/324 (79.01%), Postives = 271/324 (83.64%), Query Frame = 2
Query: 56 QSETCGGVHSFNLYRLSWAPASEDKEYVGCYADDKGDRVLSDMISSDDMTAAVCREHCADKGAPYYSTQFSNECWCGTSDNEADYERHGEGVCHMGCSGDGTVACGGYNAYSLFKYDNGGETPTTAPVTDSPGTPTMAPVMGXXXXXXXXXXX-PVRTEEPTATATSAPTSAGGSMPTTSTCSNGVPGIETSKGACCAAACGQCGGAGCSTVALSLGLGSDECCESAVLDANRPWGEAPCVIGGDVPAPTPSPDTAAPVAXXXXXXVSTAPTGDCSGEPVEAWEQCGGDGWTGSTCCEEGLECVIMGKSTCYSQCRPVITGDYR 1024
+SETCGGVHSFNLYRLSWAPA ED+EYVGCYAD KGDRVL DMISSD+MTA VCREHCADK APYY TQFS+ECWCGTSD+EADYERHGEGVCHM CSGDGTVACGGY+AYSLFK+DNGG+TPT APVTDSP T TMAPV+ PVR+EEPTA ATSAP S GGSMPTTSTCSNGVPGIETSKGACC AACGQCGGAGCSTVAL LGLGSDECCE AVLDANRP GEAPCV XXXXXX APTG+CSG+PVEAWEQCGGDGWTGSTCCEEGLECV+MGKSTCYSQCRP++ GDYR
Sbjct: 876 ESETCGGVHSFNLYRLSWAPAPEDEEYVGCYADSKGDRVLFDMISSDNMTAGVCREHCADKDAPYYGTQFSSECWCGTSDDEADYERHGEGVCHMACSGDGTVACGGYDAYSLFKHDNGGKTPTMAPVTDSPDTSTMAPVITREAPTTPRVTRSPVRSEEPTAAATSAPRSPGGSMPTTSTCSNGVPGIETSKGACCVAACGQCGGAGCSTVALDLGLGSDECCEGAVLDANRPCGEAPCVXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTGECSGDPVEAWEQCGGDGWTGSTCCEEGLECVVMGKSTCYSQCRPIMEGDYR 1199
BLAST of mRNA_E_fasciculatus_S2_contig817.16324.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI) HSP 1 Score: 142 bits (359), Expect = 7.850e-31 Identity = 61/117 (52.14%), Postives = 86/117 (73.50%), Query Frame = 2
Query: 59 SETCGGVHSFNLYRLSWAPASEDKEYVGCYADDKGDRVLSDMIS-SDDMTAAVCREHCADKGAPYYSTQFSNECWCGTSDNEADYERHGEGVCHMGCSGDGTVACGGYNAYSLFKYD 406
++ CGG +F+LY+++ EYVGC+ADD+ DR+L D I DMT AVCR +C ++ A +Y+TQ+ +ECWCG S++E DY+RHG G C GCSGD TVACGG++A++LFK+D
Sbjct: 509 ADICGGFDAFDLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQAVCRTYCEERDAYFYATQYGDECWCGMSNDEEDYKRHGRGSCLAGCSGDPTVACGGFDAFNLFKFD 625
BLAST of mRNA_E_fasciculatus_S2_contig817.16324.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW3_9PHAE) HSP 1 Score: 137 bits (346), Expect = 2.910e-30 Identity = 64/141 (45.39%), Postives = 89/141 (63.12%), Query Frame = 2
Query: 59 SETCGGVHSFNLYRLSWAPASEDKEYVGCYADDKGDRVLSDMISSDDMTAAVCREHCADKGAPYYSTQFSNECWCGTSDNEADYERHGEGVCHMGCSGDGTVACGGYNAYSLFKYD-NGGETPTTAPVTDSPGTPTMAPVM 478
+ETCGG + +LY+L+ A + +EY GC++D RV+ DM+ + MT +CR+HC A YY+TQ+ NEC+CG S + DYE HG G CHM C+GD ACGGY A+SLFK+ +G P V++ P P PV+
Sbjct: 187 TETCGGDLTLDLYKLTPADEPDHEEYEGCWSDLGESRVMQDMLVDESMTTDMCRDHCESSDAVYYATQYGNECFCGYSSDPEDYETHGPGTCHMHCAGDSGSACGGYWAFSLFKFGADGMPDPAVPDVSEPPSEPAPEPVV 327
BLAST of mRNA_E_fasciculatus_S2_contig817.16324.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV6_9PHAE) HSP 1 Score: 130 bits (328), Expect = 3.270e-28 Identity = 65/159 (40.88%), Postives = 92/159 (57.86%), Query Frame = 2
Query: 53 QQSETCGGVHSFNLYRLSWAPASEDKEYVGCYADDKGDRVLSDMIS-SDDMTAAVCREHCADKGAPYYSTQFSNECWCGTSDNEADYERHGEGVCHMGCSGDGTVACG------------------------GYNAYSLFKYDNGGETPTTAPVTDSPG 454
+ ++ CGG +F+LY+++ EYVGC+ADD+ DR+L D I DMT VCR +C ++ A +Y+TQ+ +ECWCG S++E DY+RHG G C GCSGD TVACG G++A++LFK+D E PV +PG
Sbjct: 85 EATDICGGFDAFDLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQTVCRTYCEERDAYFYATQYGDECWCGMSEDEQDYKRHGRGSCLAGCSGDPTVACGRDFQVVIYKHESFQPFLAVTLVPGGFDAFNLFKFDGVAE-----PVAPTPG 238
BLAST of mRNA_E_fasciculatus_S2_contig817.16324.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED9_ECTSI) HSP 1 Score: 128 bits (321), Expect = 7.880e-27 Identity = 59/117 (50.43%), Postives = 77/117 (65.81%), Query Frame = 2
Query: 56 QSETCGGVHSFNLYRLSWAPASEDKEYVGCYADDKGDRVLSDMISSD-DMTAAVCREHCADKGAPYYSTQFSNECWCGTSDNEADYERHGEGVCHMGCSGDGTVACGGYNAYSLFKY 403
+++ CGG +F+LY+++ EYVGC+AD+ D VL I S DMT AVCR +C D A +Y+TQ ECWCG S+ E DY R G G C GCSGD VACGG+NA++LFK+
Sbjct: 475 EADYCGGFDAFDLYKITEPREPTGDEYVGCFADNPEDWVLGGEIKSQPDMTQAVCRTYCEDLDANFYATQNGEECWCGMSEEEEDYTRSGRGSCLAGCSGDPAVACGGFNAFNLFKF 591
BLAST of mRNA_E_fasciculatus_S2_contig817.16324.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI3_ECTSI) HSP 1 Score: 126 bits (316), Expect = 1.470e-25 Identity = 65/141 (46.10%), Postives = 89/141 (63.12%), Query Frame = 2
Query: 65 TCGGVHSFNLYRL---SWAPASEDKEYVGCYADDKGDRVLSDMISSDDMTAAVCREHCADKGAPYYSTQFSNECWCG---TSDNEAD-YERHGEGVC-HMGCSGDGTVACGGYNAYSLFKYDNGGETPTTAPVTDSPGTPT 463
TCGG +F+L++L S +P SED Y+GC+ADDKGDRVL D IS+ DMT C EHC P+++ Q+ ECWCG D++ D Y+RHG C C+GDG+ CGGY+++SL+ D +T T VT++ PT
Sbjct: 258 TCGGYDAFDLFKLEEDSLSPPSEDY-YLGCFADDKGDRVLEDKISASDMTLETCEEHCTALDKPFFALQWGKECWCGGCELQDDDLDRYDRHGIASCTDYPCTGDGSRQCGGYDSFSLYNRDTCDDTVCTMEVTEATTVPT 397
BLAST of mRNA_E_fasciculatus_S2_contig817.16324.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD0_9PHAE) HSP 1 Score: 113 bits (282), Expect = 1.080e-24 Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = 2
Query: 131 EYVGCYADDKGDRVLSDMISSD-DMTAAVCREHCADKGAPYYSTQFSNECWCGTSDNEADYERHGEGVCHMGCSGDGTVACGGYNAYSLFK 400
EYVGC+ADD DR+L + I DMT VCR +C A +Y+TQ+ +ECWCG S++E DY+RHG G C M CSGD CGG+NA++L+K
Sbjct: 104 EYVGCFADDPEDRLLGNEIKHQPDMTQVVCRVYCEGYDAQFYATQYGDECWCGMSNDEEDYKRHGSGSCLMECSGDSATVCGGFNAFNLYK 194
BLAST of mRNA_E_fasciculatus_S2_contig817.16324.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU28_ECTSI) HSP 1 Score: 117 bits (292), Expect = 6.310e-23 Identity = 90/327 (27.52%), Postives = 115/327 (35.17%), Query Frame = 2
Query: 122 EDKEYVGCYADDKGDRVLSDMISSDDMTAAVCREHCADKGAPYYSTQFSNECWCGTSDNEADYERH-----GEGVCHMGCSGDGTVACGGYNAYSLFKYDNGGETPTTAPVTDSPGTPTMAPVMGXXXXXXXXXXXPVRTEEPTATATSAPTSAGGSMPTTSTCSNGVPGIETSKGACCAAACGQCGGAGCSTVALSLGLGSDECCESAVLDANRPWGEAPCVIGGDVPAPTPSPDTAAPVAXXXXXXVSTAPTGDCSGEPVEAWEQCGGDGWTGSTCCEEGLECVIMGKSTCYSQCRPVITGDYR*ARTMYSPPPLSGKRPPTTSS 1087
E+ EYVGC+ D+K DR+L D + S DMT VC HC + GA + +TQF ECWC ++D DYERH + VC M C GD T CGG+N++ L+K + TTST VL CSG PVEA+EQCGG WTGSTCC +G +C M + CY+QCRP +T + +P P+S RPP S
Sbjct: 394 EEAEYVGCFHDNKEDRILGDKLDSVDMTTEVCLAHCTELGAAFMATQFGFECWC-SADELLDYERHYQMNDADAVCDMSCRGDKTQPCGGFNSFDLYK-----------------------------------------------------------LQTTST----------------------------------------------VL---------------------------------------------CSGTPVEAYEQCGGKDWTGSTCCMDGYDCTQMVEDGCYAQCRPSVTVE------PITPSPVSTTRPPVALS 563
BLAST of mRNA_E_fasciculatus_S2_contig817.16324.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED5_ECTSI) HSP 1 Score: 109 bits (273), Expect = 2.120e-21 Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = 2
Query: 122 EDKEYVGCYADDKGDRVLSDMIS-SDDMTAAVCREHCADKGAPYYSTQFSNECWCGTSDNEADYERHGEGVCHMGCSGDGTVACGGYNAYSLFK 400
E EYVGC+ADD DR+L + I DMT AVCR +C A +Y+TQ+ +ECWCG S++E DY+RHG G C M CSGD CGG +A++L+K
Sbjct: 355 EVDEYVGCFADDPEDRLLGNEIKYQPDMTQAVCRTYCEGYDAHFYATQYGDECWCGMSNDEEDYKRHGSGSCLMECSGDPGTVCGGNDAFNLYK 448 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig817.16324.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig817.16324.1 >prot_E_fasciculatus_S2_contig817.16324.1 ID=prot_E_fasciculatus_S2_contig817.16324.1|Name=mRNA_E_fasciculatus_S2_contig817.16324.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=282bp MISSDDMTAAVCREHCADKGAPYYSTQFSNECWCGTSDNEADYERHGEGVback to top mRNA from alignment at E_fasciculatus_S2_contig817:988..6061+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig817.16324.1 ID=mRNA_E_fasciculatus_S2_contig817.16324.1|Name=mRNA_E_fasciculatus_S2_contig817.16324.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5074bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig817:988..6061+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig817:988..6061+ >mRNA_E_fasciculatus_S2_contig817.16324.1 ID=mRNA_E_fasciculatus_S2_contig817.16324.1|Name=mRNA_E_fasciculatus_S2_contig817.16324.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=846bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig817:988..6061+ (Ectocarpus fasciculatus EfasUO2)back to top |