mRNA_E_fasciculatus_S2_contig8169.16323.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8169.16323.1
Unique NamemRNA_E_fasciculatus_S2_contig8169.16323.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8169.16323.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Z3_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 4.380e-47
Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 1
Query:    4 EPGMPLFTTLLIYLDADWRREWDAETLFLDPPTGTGVFVRPRGGRAIVMDQDITHRISTPSQTAERPRYSLVLKLIFFSKKHGR 255
            EPGMPLF TLLIYLDADWRREWDAETLFLDPPTGTGVFVRPR GRAIVMDQD+THRISTPSQTA RPRYSLVLKLIFFSK+HGR
Sbjct:  518 EPGMPLFATLLIYLDADWRREWDAETLFLDPPTGTGVFVRPRAGRAIVMDQDVTHRISTPSQTANRPRYSLVLKLIFFSKQHGR 601          
BLAST of mRNA_E_fasciculatus_S2_contig8169.16323.1 vs.
Match: SET (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV9_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 1.380e-46
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 1
Query:    1 REPGMPLFTTLLIYLDADWRREWDAETLFLDPPTGTGVFVRPRGGRAIVMDQDITHRISTPSQTAERPRYSLVLKLIFFSKKHGR 255
            REPGMPLF TLLIYLDADWRREWDAETLFLDPPTGTGVFVRPR GR IVMDQD+THRISTPSQ A+RPRYSLVLKLIFFSK+HGR
Sbjct:  396 REPGMPLFATLLIYLDADWRREWDAETLFLDPPTGTGVFVRPRAGRVIVMDQDVTHRISTPSQMAKRPRYSLVLKLIFFSKQHGR 480          
BLAST of mRNA_E_fasciculatus_S2_contig8169.16323.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HGZ3_HEMAN)

HSP 1 Score: 119 bits (297), Expect = 4.560e-32
Identity = 55/85 (64.71%), Postives = 65/85 (76.47%), Query Frame = 1
Query:    1 REPGMPLFTTLLIYLDADWRREWDAETLFLDPPTGTGVFVRPRGGRAIVMDQDITHRISTPSQTA-ERPRYSLVLKLIFFSKKHG 252
            REP  PLF T L+YLD++W  EWDAETLFLDP T TGVFVRP+ GR ++MDQD+THR+S PS  A +RPRYSLV KL+   K H 
Sbjct:   79 REPYKPLFVTALLYLDSEWPNEWDAETLFLDPETQTGVFVRPKAGRLVLMDQDVTHRVSAPSPLAGKRPRYSLVWKLVLHPKTHA 163          
BLAST of mRNA_E_fasciculatus_S2_contig8169.16323.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E9G6_9EUKA)

HSP 1 Score: 114 bits (285), Expect = 6.590e-31
Identity = 51/75 (68.00%), Postives = 61/75 (81.33%), Query Frame = 1
Query:   10 GMPLFTTLLIYLDADWRREWDAETLFLDPPTGTGVFVRPRGGRAIVMDQDITHRISTPSQTAERPRYSLVLKLIF 234
            G PLF +LLIYLD  WRREWDAETLFL+P +G G+ V+PR GRA++M QD+ HR+STPS  A RPRYSLV KL+F
Sbjct:    6 GRPLFVSLLIYLDETWRREWDAETLFLEPSSGAGLLVQPRPGRAVLMHQDVLHRVSTPSMLARRPRYSLVWKLLF 80          
BLAST of mRNA_E_fasciculatus_S2_contig8169.16323.1 vs.
Match: Hypothetical (protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AK99_9EUKA)

HSP 1 Score: 113 bits (283), Expect = 5.360e-30
Identity = 49/75 (65.33%), Postives = 62/75 (82.67%), Query Frame = 1
Query:   10 GMPLFTTLLIYLDADWRREWDAETLFLDPPTGTGVFVRPRGGRAIVMDQDITHRISTPSQTAERPRYSLVLKLIF 234
            G PLF +L++YLD +WRREWDAETLF++P +G G+ V+PR GRA++M QD+ HR+STPS  A RPRYSLV KLIF
Sbjct:   58 GKPLFVSLIVYLDEEWRREWDAETLFIEPESGAGLLVQPRPGRAVLMHQDVLHRVSTPSLIARRPRYSLVWKLIF 132          
BLAST of mRNA_E_fasciculatus_S2_contig8169.16323.1 vs.
Match: Hypothetical (protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BQ14_CHRCT)

HSP 1 Score: 113 bits (283), Expect = 1.810e-29
Identity = 51/79 (64.56%), Postives = 62/79 (78.48%), Query Frame = 1
Query:   10 GMPLFTTLLIYLDADWRREWDAETLFLDPPTGTGVFVRPRGGRAIVMDQDITHRISTPSQTAERPRYSLVLKLIFFSKK 246
            G PLF +L++YLDA WR +WDAETLFLD  +GTGVFV+PR GRA++M QD  HR+S PS  A RPRYSLV KL+F  K+
Sbjct:  118 GKPLFVSLIVYLDAQWRPQWDAETLFLDAESGTGVFVQPRPGRAVLMHQDALHRVSAPSALAHRPRYSLVWKLLFVPKR 196          
BLAST of mRNA_E_fasciculatus_S2_contig8169.16323.1 vs.
Match: Uncharacterized (protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PLQ3_9CHLO)

HSP 1 Score: 117 bits (294), Expect = 3.140e-29
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 1
Query:    1 REPGMPLFTTLLIYLDADWRREWDAETLFLDPPTGTGVFVRPRGGRAIVMDQDITHRISTPSQTAERPRYSLVLKLIFFSKKHG 252
            REPG PLF T+L YL+ +W  EW AETLF DP TGTGVFV+PR GR ++MDQD+ HRIS+P++ AE PRYSLV KL+ + ++ G
Sbjct:  355 REPGRPLFVTVLAYLNEEWPEEWHAETLFADPETGTGVFVQPRPGRVVIMDQDMPHRISSPARDAEGPRYSLVWKLLLWPRQRG 438          
BLAST of mRNA_E_fasciculatus_S2_contig8169.16323.1 vs.
Match: Uncharacterized (protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GK00_GONPE)

HSP 1 Score: 115 bits (287), Expect = 5.890e-28
Identity = 55/85 (64.71%), Postives = 67/85 (78.82%), Query Frame = 1
Query:    1 REPGMPLFTTLLIYLDADWRREWDAETLFLDPPTGTGVFVRPRGGRAIVMDQDITHRISTPSQTAE-RPRYSLVLKLIFFSKKHG 252
            REPG PLF +LL+YL+A W REWDAETLFLD P+  GV VRP+  RA+++DQDI HR+STPS TA  RPRYSLV KL+F  ++ G
Sbjct:  276 REPGRPLFVSLLLYLNARWDREWDAETLFLDTPSDCGVLVRPKPYRAVLLDQDILHRLSTPSLTAAGRPRYSLVWKLVFLPRRPG 360          
BLAST of mRNA_E_fasciculatus_S2_contig8169.16323.1 vs.
Match: Uncharacterized (protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QHE4_9CHLO)

HSP 1 Score: 108 bits (269), Expect = 1.290e-27
Identity = 52/84 (61.90%), Postives = 61/84 (72.62%), Query Frame = 1
Query:    1 REPGMPLFTTLLIYLDADWRREWDAETLFLDPPTGTGVFVRPRGGRAIVMDQDITHRISTPSQTAERPRYSLVLKLIFFSKKHG 252
            REPG PL  +LL+YLD DW  E DAETLFLD  + TGV VRPR  RA++MDQD+ HR+S PS  A RPRYSLV KL+   K+ G
Sbjct:   36 REPGKPLLFSLLLYLDGDWPLEHDAETLFLDSVSDTGVVVRPRRFRAVLMDQDVVHRLSAPSHAAGRPRYSLVWKLVMLPKQPG 119          
BLAST of mRNA_E_fasciculatus_S2_contig8169.16323.1 vs.
Match: Hypothetical (protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3X7J3_EMIHU)

HSP 1 Score: 105 bits (262), Expect = 4.220e-27
Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   10 GMPLFTTLLIYLDADWRREWDAETLFLDPPTGTGVFVRPRGGRAIVMDQDITHRISTPSQTAERPRYSLVLKLIFFSKK 246
            G PL  +LL+Y+D +WRREWDAETLFLD   G GV V+PR GR ++M QD+ HR+S PS  A RPRYSLVL+L    K+
Sbjct:   59 GRPLLVSLLVYVDDEWRREWDAETLFLDDERGVGVLVQPRPGRCVLMHQDVLHRVSAPSLAARRPRYSLVLRLCLVPKE 137          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8169.16323.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized4.380e-4794.05protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
SET1.380e-4691.76domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Hypothetical4.560e-3264.71protein (Fragment) n=1 Tax=Hemiselmis andersenii T... [more]
Hypothetical6.590e-3168.00protein n=1 Tax=Phaeocystis antarctica TaxID=33657... [more]
Hypothetical5.360e-3065.33protein n=1 Tax=Haptolina ericina TaxID=156174 Rep... [more]
Hypothetical1.810e-2964.56protein n=1 Tax=Chrysotila carterae TaxID=13221 Re... [more]
Uncharacterized3.140e-2961.90protein n=1 Tax=Raphidocelis subcapitata TaxID=307... [more]
Uncharacterized5.890e-2864.71protein n=1 Tax=Gonium pectorale TaxID=33097 RepID... [more]
Uncharacterized1.290e-2761.90protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=... [more]
Hypothetical4.220e-2759.49protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8169contigE_fasciculatus_S2_contig8169:5047..6109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score160.6
Seed ortholog evalue3e-37
Seed eggNOG ortholog2880.D8LCV9
Model size255
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG4443@2759
Cds size243
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842478.5574229-CDS-E_fasciculatus_S2_contig8169:5046..51121696842478.5574229-CDS-E_fasciculatus_S2_contig8169:5046..5112Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8169 5047..5112 -
1696842478.57005-CDS-E_fasciculatus_S2_contig8169:5920..60971696842478.57005-CDS-E_fasciculatus_S2_contig8169:5920..6097Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8169 5921..6097 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842478.5803068-UTR-E_fasciculatus_S2_contig8169:6097..61091696842478.5803068-UTR-E_fasciculatus_S2_contig8169:6097..6109Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8169 6098..6109 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8169.16323.1prot_E_fasciculatus_S2_contig8169.16323.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8169 5047..6097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8169.16323.1

>prot_E_fasciculatus_S2_contig8169.16323.1 ID=prot_E_fasciculatus_S2_contig8169.16323.1|Name=mRNA_E_fasciculatus_S2_contig8169.16323.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=81bp
MPLFTTLLIYLDADWRREWDAETLFLDPPTGTGVFVRPRGGRAIVMDQDI
THRISTPSQTAERPRYSLVLKLIFFSKKHGR
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mRNA from alignment at E_fasciculatus_S2_contig8169:5047..6109-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8169.16323.1 ID=mRNA_E_fasciculatus_S2_contig8169.16323.1|Name=mRNA_E_fasciculatus_S2_contig8169.16323.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1063bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8169:5047..6109- (Ectocarpus fasciculatus EfasUO2)
AGGGAGCCGGGGATGCCTCTCTTCACGACGCTGCTGATTTACCTCGACGC GGACTGGCGGAGGGAGTGGGACGCGGAGACGCTCTTCCTCGACCCCCCTA CCGGTACCGGGGTGTTCGTTAGGCCGAGGGGGGGCCGGGCCATCGTGATG GACCAGGACATCACGCACCGGATTTCCACTCCATCTCAGGTGTAAAAGGA GCTTGAGAACCTTTTTCTTTGCCCGAGGCTCGTTTCTTGTTTCTCCCGAG AGGGGAACGCAACAACTACAATATAGGTTTTAGTGTGGGCCTCTTAACTG AGCGCCTGTAGTTGTGATCGATCTTATTGAGCCTCCAATTCAAAACTCCG AGGCCACTACGTGGTGTTGATTTTCACGTGCTGCATGGCACACACTTGTA TATGTCCCTATACTCCTTGCCTCGTGTGCCCGAAACTATTTTGGTGTGCG TCTGCATCAAGGTCGGGTAGGTTGCATGGCATTTCACACGCCGTGGGCCG ATTTTCACAGCTTGTTTTGCTCTGGAGCTCAACGGCTGATGGTGCCGGAA ATGTCAGCGTTGGAACCGGTGTGTCGAGAACTTTCCGAGAACTTTCCGAA AGCGCAGTATTTGATTTTTTTATCCTCTTCGTCGTGGAGTATTCGAGCTC TGAGAAGCCGTCCAAGCAGTGTCTGTAGCATCTGATACAAGCTACGGTAG GTGGAGAGTGTATGCACTATTTTTTTTCTGTTCTCATGCTGGTTGGTTCA AGCTGGACGGGGGCGGCGGCACGTACACGGAATCCGCTCGAATGCATACG TAGATCTCGTTTTTTTTTAGTTGTCATCGTTCCCTCACTTCACAACTGCT GTGCGGACCGTACTTGTTGCTTTGTTGCTGCTGCCCCGTGCGATTCCGAC TCTGTCCCGCAGTTTCCTCGCGCCGTCCCCGGAGGCAGGTTCGCTTATTT CACCCCCTTCTTGTTGCTATCTTCATACCCCTCCATCCTCGTGACAGACG GCCGAACGACCACGGTACAGCCTAGTCCTGAAGCTCATCTTTTTCTCGAA GAAGCACGGGCGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8169:5047..6109-

>mRNA_E_fasciculatus_S2_contig8169.16323.1 ID=mRNA_E_fasciculatus_S2_contig8169.16323.1|Name=mRNA_E_fasciculatus_S2_contig8169.16323.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=243bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8169:5047..6109- (Ectocarpus fasciculatus EfasUO2)
ATGCCTCTCTTCACGACGCTGCTGATTTACCTCGACGCGGACTGGCGGAG
GGAGTGGGACGCGGAGACGCTCTTCCTCGACCCCCCTACCGGTACCGGGG
TGTTCGTTAGGCCGAGGGGGGGCCGGGCCATCGTGATGGACCAGGACATC
ACGCACCGGATTTCCACTCCATCTCAGACGGCCGAACGACCACGGTACAG
CCTAGTCCTGAAGCTCATCTTTTTCTCGAAGAAGCACGGGCGC
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