mRNA_E_fasciculatus_S2_contig816.16314.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig816.16314.1
Unique NamemRNA_E_fasciculatus_S2_contig816.16314.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig816.16314.1 vs.
Match: Thioredoxin (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL3_ECTSI)

HSP 1 Score: 370 bits (949), Expect = 1.020e-124
Identity = 198/224 (88.39%), Postives = 205/224 (91.52%), Query Frame = 1 
Query:    1 DIKEFKERMALVPLRFVDADALMGLARSSEAVFVLSANADAEDADPSTVAPGVLLAATLSQHEATFCTTSPEVLASLGLGVSGVSPALVKVAIGQGGQLLQPAVYKTKSDTEGAGDASASFSVAAASSWSVLSWVERERFGLVSDLSPDNFSRLASLGRLMVLGVFDPKHEETRSFHKVFGDVASDMGVRHSERLMFGTVNRVKMAGFVETFNIYEGHPRVIVM 672
            DIKEFKERMALVPLRFVDADAL GLARSSEAVFVLSAN   EDADPSTVAPGVLLAATLSQHEATFCTTSPEVLASLGLGVSGVSPALVKV  GQGG+LLQPA YKT+  T+G  D SA+ SVAAASSWSVLSWVERERFGLVSDLSPDNF RL SLGRLMVLGVFDPKHE TRSF KVFGDVASDMGVRHSERLMFGTVNRV M GF+ETFN+YEGHP+VIVM
Sbjct:  133 DIKEFKERMALVPLRFVDADALTGLARSSEAVFVLSAN---EDADPSTVAPGVLLAATLSQHEATFCTTSPEVLASLGLGVSGVSPALVKVVAGQGGRLLQPAAYKTERGTQGVNDDSATVSVAAASSWSVLSWVERERFGLVSDLSPDNFMRLGSLGRLMVLGVFDPKHEATRSFRKVFGDVASDMGVRHSERLMFGTVNRVTMPGFMETFNVYEGHPQVIVM 353
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BLAST of mRNA_E_fasciculatus_S2_contig816.16314.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K460_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.340e-27
Identity = 59/70 (84.29%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:  250 VSPALVKVAIGQGGQLLQPAVYKTKSDTEGAGDASASFSVAAASSWSVLSWVERERFGLVSDLSPDNFSR 459
            VSPALVKV  GQGG+LLQPAVYKT+  TEGA D SA+ SVAAASSWSVLSWVERERFGLVSDLSPDNF R
Sbjct:   21 VSPALVKVVAGQGGRLLQPAVYKTERGTEGANDDSATVSVAAASSWSVLSWVERERFGLVSDLSPDNFMR 90
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig816.16314.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Thioredoxin1.020e-12488.39domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.340e-2784.29protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig816contigE_fasciculatus_S2_contig816:23018..27030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score355.5
Seed ortholog evalue1.8e-95
Seed eggNOG ortholog2880.D8LNL3
Preferred nameTMX3
Model size693
KEGG koko:K09585,ko:K13996
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0002576,GO:0003674,GO:0003756,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006457,GO:0006464,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0008150,GO:0008152,GO:0009986,GO:0009987,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0016192,GO:0016491,GO:0016667,GO:0016670,GO:0016853,GO:0016860,GO:0016864,GO:0016972,GO:0018158,GO:0018171,GO:0018193,GO:0018198,GO:0019538,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031091,GO:0031092,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032940,GO:0033554,GO:0034976,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055114,GO:0071704,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0098827,GO:0099503,GO:0140096,GO:1901564
Exons5
EggNOG free text desc.peptidyl-cysteine oxidation
EggNOG OGsCOG0526@1,KOG4277@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-08_006690.1
EC5.3.4.1
Cds size669
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig816.16314.1prot_E_fasciculatus_S2_contig816.16314.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig816 23042..27030 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842477.7723198-UTR-E_fasciculatus_S2_contig816:23017..230411696842477.7723198-UTR-E_fasciculatus_S2_contig816:23017..23041Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig816 23018..23041 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842477.7858527-CDS-E_fasciculatus_S2_contig816:23041..231311696842477.7858527-CDS-E_fasciculatus_S2_contig816:23041..23131Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig816 23042..23131 +
1696842477.8022504-CDS-E_fasciculatus_S2_contig816:23677..238111696842477.8022504-CDS-E_fasciculatus_S2_contig816:23677..23811Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig816 23678..23811 +
1696842477.8153791-CDS-E_fasciculatus_S2_contig816:24766..249761696842477.8153791-CDS-E_fasciculatus_S2_contig816:24766..24976Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig816 24767..24976 +
1696842477.8337154-CDS-E_fasciculatus_S2_contig816:25885..259611696842477.8337154-CDS-E_fasciculatus_S2_contig816:25885..25961Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig816 25886..25961 +
1696842477.8464153-CDS-E_fasciculatus_S2_contig816:26871..270301696842477.8464153-CDS-E_fasciculatus_S2_contig816:26871..27030Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig816 26872..27030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig816.16314.1

>prot_E_fasciculatus_S2_contig816.16314.1 ID=prot_E_fasciculatus_S2_contig816.16314.1|Name=mRNA_E_fasciculatus_S2_contig816.16314.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=223bp
MALVPLRFVDADALMGLARSSEAVFVLSANADAEDADPSTVAPGVLLAAT
LSQHEATFCTTSPEVLASLGLGVSGVSPALVKVAIGQGGQLLQPAVYKTK
SDTEGAGDASASFSVAAASSWSVLSWVERERFGLVSDLSPDNFSRLASLG
RLMVLGVFDPKHEETRSFHKVFGDVASDMGVRHSERLMFGTVNRVKMAGF
VETFNIYEGHPRVIVMVRVSVS*
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mRNA from alignment at E_fasciculatus_S2_contig816:23018..27030+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig816.16314.1 ID=mRNA_E_fasciculatus_S2_contig816.16314.1|Name=mRNA_E_fasciculatus_S2_contig816.16314.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4013bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig816:23018..27030+ (Ectocarpus fasciculatus EfasUO2)
GATATCAAGGAGTTCAAAGAGCGCATGGCTTTGGTTCCCCTCCGCTTTGT
GGACGCCGACGCTTTGATGGGGCTGGCGAGAAGCTCGGAAGCCGTGTTTG
TGCTCTCTGCCAACGTGAGTGAACTCGAGCTCGTGGATTCCTCTATTTTC
TTGCCCTGTGTTGTACTAGCACTGACTGCCATCCCTGCCGATCCAGGTGC
ATTGGACCCGCCTTTGACCGAGTTTGTTGGTGTCGGCATCTTCCAGATGC
ATGCCTACCTCCGCTGTCTGCGACACGGGATAAGCGATGCTATTCTATTC
TACCCGTGAATTGCTACAATACAATACAGCCAGCAGTACTGTAGTATGTG
AAGCCCGGCCTGTGGTCTGTGGTCTTCTGTGGTCTTCTGTGGTGTTGGGC
CGAAATCCGTTCTGAGGGCTTGCGGCACATGTACATGTCCACGCTCACAG
CCATACCCCATTGTACGTATTTTTTTCCAATCTATCTGTGCCGTGCCGCT
GTCTCTATTCTCCTCCTCGCGCTCTCTCTGTTTGCTTCCGGTTCTCTTTC
TGTTCTCTCTCTCTCTCTCTCTCTTTCTGTTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTAATCTGGCGCTCGCGG
TGTACAATAGGCGGATGCTGAGGATGCTGACCCTTCTACGGTGGCCCCGG
GTGTTCTGCTGGCCGCAACACTGTCGCAGCACGAAGCCACGTTCTGCACG
ACATCACCGGAGGTGTTAGCGTCACTAGGACTAGGAGTGAGCGGGTGAGA
AGTGTAACAACATAGACGTTGTCGTCTTCTTGAGTGTTTCATCGCGTTTT
GGGCTATTTGGGATACACAACCGCTTCTCCCTCCCTTCCTCCCACCTAGA
TTCAACGGCGTCGTTCGTTCGGTTGGGGGTTTCTCGATTTGCTCTTGATT
GAACCCACGCACGTTCTCGTAGGCTGCTCCGCTTTCCTTAGCTTCGACGA
GACACGTCGCCAGCCCTGTCTCGATCTACTACTTCTACCATTGCGCGTGG
GGCGGATCAGCTCATTCTATCAGCCGTTGCATCAGCTAGCGCCGGCGTTG
AGGGCTTGAAATAGGCATCCATGCGGCGAGGACGCGTTGTGACATGCCGC
ATGACTGCATGACTGCAAACTTGCGTCTTGTCTTGTCTTGTCTTGGTCGA
GAGTTCTTGGAAGAGAAACTGAAAATGTTTAATGTTACAATACTTTCCTG
CGACTAGATACACCTTCTTTGCAAGTCTGAGCGCGGAGCCCGGACAAATC
TGCCCACTCACCTGTACACCTCTGCCACTTCAGGAAAGGGGCTCCGCGGA
CGTGAAAGCCGCTGTCTTTTCGATGTACTTGAGCGCCCATGGCGTGGGCA
ATAGCTGGCATGCTCTGCAGCAGGCGGTTATGCATGGGGTTCAATTCGTT
GATTTATGTAGCACACGTCCTAGGAACACGCCATGAAAATCGTAGTCGGC
TAGTAGACTAGGCGGAGAAACGTCGCGTCTGTGTGTGCACTGGGATGTTG
TGGGGGTGTTGTGCTACAAGTATTGTTGACTGGGGATTTAGCACGATACG
TATATTCGTGTGACGACATGGCGCCCCACGCCTCTTCAACAACCCGAGCC
CGGAACCATGTCACCCTCCCGACGAGCCATGCCTTACCTCCCATGAACTC
CATCGAGTGGTGTGTTCCACGGCAACGTTAACGTTAACCTTGGTGCCAGG
GTGTCACCGGCGCTAGTGAAGGTAGCGATCGGGCAGGGGGGACAACTGCT
GCAGCCGGCCGTGTACAAGACGAAGAGCGATACCGAAGGTGCCGGCGATG
CCAGCGCTAGTTTCAGCGTGGCCGCTGCCTCTTCGTGGTCCGTGTTGAGC
TGGGTGGAGAGGGAGAGGTTTGGATTGGTATCGGACCTTTCGCCGGACAA
CTTTTCGAGGTATGTGATGTACTGTAATGTACGTCGTGCAACCGTCGTGC
TGTTTTTCTTTTCACTCGGTTGCCATGTAGCCAATCGCGAGGTTGGCTTT
TCAGAACTAACTGCATTTTGCGTGCGTTGTGGAGGATGTATTGAGTATTG
TAGACTGTTTCGGGGACCATAGGCCGGATGGATGTCGGGAGCTCTAACTC
TCATTCTCAGAAAGAACGTCATAACGTCATAACGTCATGACGTCATAACG
TCTGTCTCTGCAGAATGGATCGAGAGGCCGCCGCACTTCGTTGCTGGCTG
CCATTGCCTTGCCATTGCCATTGCCATTGCCATTGCCATTGCCATTGCTC
AACTACGCTCAAGGCAGGAAAGAAACGTCTAGCGCCCACTTGGTGTGGCG
CGTATACAGTACATGTCCTGGGGGGGTTAGTGGCAAGATTCGCTGTTTTG
TCGTGTCCCTATCCCATCGCCGAACGGTTTCGTCAGCAGTACCCACACCA
CACCAGTACAATACCAGTATAGAGATGGAACCAATGGAACCAATTGATCA
AACTAATGGCTTCAGGAGACTCGGGGGGCAGTTTGTGTTTGTGTGAATAT
ATCCACTTTCTTCATGTTTAGATAGAAATGGCAACACAAAGCTTCCAGCC
AGCAAGGGACCTATTGTAGTTCGATTTGAACAGACAGGCCTCACGTTCTG
AACTGTTGCGTACTCGTTGTCTGCATGGCAGCTGTTGCGATGCACCGAAC
CGGGCAGCGTCTAAACATGCCACATGCCACCCGGGCTGTTCACCGTTGAC
ACCATCGACATACAAACGCCATCGTAATCGCACCTTCACCTTACCTCCAA
TACCCCCCTACAAGTACCCCAATCTAATCCCGACAACTTTAACTTCCCGT
CGACCCAAACTGCGGCAGGCTGGCTTCCCTGGGAAGGTTGATGGTGCTTG
GAGTTTTTGACCCCAAGCACGAGGAGACAAGATCCTTTCACAAGGTACGG
TACGGTACGGTTCGGCTAGTCTACAGCAGAAATGCATAGCGCCCGTCACG
TGCGAATTGTTTTCTGCCGTACGACACTGCATGTCGTGCCATGTCATGTC
ATGTCATGTCATGTCATGTCATGTCATGTCACACTTTTGCCATTCATGAC
ATGTCATGTCATGTCACACTTTTGCCATTCTATGGCATTCTTACCGAGAT
GGCGAGTACAGTACAGCAGTACGCCATTACCCTCGTTCATGCCATGGCTA
ACCTTAAGACTACGCTTCCTCGGAGGCGAAAAGTGTGCATTTTAACGAAC
GGCAACGAACGGTGTTGCTCAACCCGCAAAGGGTCTGCGCCTGTGGCATG
CGATACCGGTCACGGCTTGTGTCGGGATAGTCTCGCTGACACTTGTACCA
GTGCATGCACACGTCACACGTCACACGTCACACGTCACACGTCCGTGAGA
CACCGGCGACTGCGATTTTGAGTACAGTACAGTACATGTGCGGCGAATCA
CAGCAGTTCTCTCCCATGTCCCACCCCTTCCCGCAGAGGAAGCTGCTCCT
GGTTGATGTCTGGCGGCTATTTTTAGATCTCGAGGAAACTGCTCGTGGTT
CATGTCTGGCGGCTACTTTAGATCTGGGCCTCGGGTTGTTGTAGACCTAA
CCCTCATCTTCGCAGCCATGTACATACAAGAGAGATGGGGGGCATCGTTG
AATCTAGCTTCCGCCATGTTGGTCTTGTGTAAAACCTCATGTTGGCAGCT
ATGTACATCGACGGAGAGCATCGTTGAATCGAGCCTCAGTTATCACGAAC
TGCGTTGTCGCACAGTAGACCTCATCTTCGCGACGGAGCGCATCATTGAA
TGGAGCTTCCACCGTGTTGCATGGAACACACAAAACCACCGGTCACTCAT
TCAGGTTTTCGGGGATGTGGCCTCGGACATGGGTGTGAGGCACTCCGAGA
GGCTCATGTTCGGGACGGTGAACCGCGTTAAGATGGCAGGTTTCGTGGAG
ACGTTCAACATCTACGAGGGGCATCCGCGCGTCATAGTCATGGTGAGAGT
GTCAGTATCATAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig816:23018..27030+

>mRNA_E_fasciculatus_S2_contig816.16314.1 ID=mRNA_E_fasciculatus_S2_contig816.16314.1|Name=mRNA_E_fasciculatus_S2_contig816.16314.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=669bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig816:23018..27030+ (Ectocarpus fasciculatus EfasUO2)
ATGGCTTTGGTTCCCCTCCGCTTTGTGGACGCCGACGCTTTGATGGGGCT
GGCGAGAAGCTCGGAAGCCGTGTTTGTGCTCTCTGCCAACGCGGATGCTG
AGGATGCTGACCCTTCTACGGTGGCCCCGGGTGTTCTGCTGGCCGCAACA
CTGTCGCAGCACGAAGCCACGTTCTGCACGACATCACCGGAGGTGTTAGC
GTCACTAGGACTAGGAGTGAGCGGGGTGTCACCGGCGCTAGTGAAGGTAG
CGATCGGGCAGGGGGGACAACTGCTGCAGCCGGCCGTGTACAAGACGAAG
AGCGATACCGAAGGTGCCGGCGATGCCAGCGCTAGTTTCAGCGTGGCCGC
TGCCTCTTCGTGGTCCGTGTTGAGCTGGGTGGAGAGGGAGAGGTTTGGAT
TGGTATCGGACCTTTCGCCGGACAACTTTTCGAGGCTGGCTTCCCTGGGA
AGGTTGATGGTGCTTGGAGTTTTTGACCCCAAGCACGAGGAGACAAGATC
CTTTCACAAGGTTTTCGGGGATGTGGCCTCGGACATGGGTGTGAGGCACT
CCGAGAGGCTCATGTTCGGGACGGTGAACCGCGTTAAGATGGCAGGTTTC
GTGGAGACGTTCAACATCTACGAGGGGCATCCGCGCGTCATAGTCATGGT
GAGAGTGTCAGTATCATAG
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