mRNA_E_fasciculatus_S2_contig816.16313.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Match: Thioredoxin (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL3_ECTSI) HSP 1 Score: 224 bits (571), Expect = 2.550e-69 Identity = 111/136 (81.62%), Postives = 124/136 (91.18%), Query Frame = 1
Query: 1 MMSLVSRMRCRALRLLLAVTAMVVCSISIASGEVHNLGDNDFDDFVANLPEEALLLVDFYKPGCRHCQRLSPVLEYLEAEWEKEEPDDSKRWFKLAKVDLEKNPRLKTVFGIAKIPDLRFVRAGRWGTYQGGRLIE 408
MM L++ + C ALRLL + VVC+I++ G VHNLGDNDFDDFVA+LPE+ALLLVDFYKPGCRHCQRL+PVL+YLEAEWEKEEPDDSKRWFKLAKVD+EKNPRLKTVFGIAK+PDLRFVRAGRWGTYQGGRLIE
Sbjct: 1 MMPLMASIPCWALRLLAVIA--VVCTIAL--GGVHNLGDNDFDDFVADLPEQALLLVDFYKPGCRHCQRLNPVLDYLEAEWEKEEPDDSKRWFKLAKVDIEKNPRLKTVFGIAKLPDLRFVRAGRWGTYQGGRLIE 132
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Match: Thioredoxin (n=1 Tax=Syntrophaceae bacterium TaxID=2052184 RepID=A0A354C2F0_9DELT) HSP 1 Score: 56.2 bits (134), Expect = 1.360e-7 Identity = 32/89 (35.96%), Postives = 51/89 (57.30%), Query Frame = 1
Query: 106 NLGDNDFDDFVANLPEEALLLVDFYKPGCRHCQRLSPVLEYLEAEWEKEEPDDSKRWFKLAKVDLEKNPRLKTVFGIAKIPDLRFVRAG 372
+L D++FD+ V E +LVDF+ P C C+ + PV+E L A + K K+AKV++++NP+ TV+G+ IP L + G
Sbjct: 9 HLTDSNFDEEVVK--SEKPVLVDFWAPWCGPCRAIGPVVEELAAAY--------KDRVKVAKVNIDENPKTATVYGVMSIPTLILFKGG 87
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Match: Thioredoxin (n=1 Tax=Chlorobi bacterium TaxID=2268192 RepID=A0A7V5SII0_9BACT) HSP 1 Score: 55.5 bits (132), Expect = 3.260e-7 Identity = 32/88 (36.36%), Postives = 50/88 (56.82%), Query Frame = 1
Query: 160 LLLVDFYKPGCRHCQRLSPVLEYLEAEWEKEEPDDSKRWFKLAKVDLEKNPRLKTVFGIAKIPDLRFVRAGRW-----GTYQGGRLIE 408
++LVDF+ C C+ ++PV+E + E+ ++R K+AKVD+++NPR+ +GI IP L F RAG G G L+E
Sbjct: 21 VVLVDFWAIWCGPCRMIAPVVEEIAREY-------AERGVKVAKVDVDRNPRIAMQYGIRAIPSLLFFRAGEHVDTVIGAVPKGYLVE 101
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Match: Thioredoxin (n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A349H0L1_9BACT) HSP 1 Score: 54.7 bits (130), Expect = 5.300e-7 Identity = 35/109 (32.11%), Postives = 58/109 (53.21%), Query Frame = 1
Query: 85 IASGEVHNLGDNDFDDFVANLPEEALLLVDFYKPGCRHCQRLSPVLEYLEAEWEKEEPDDSKRWFKLAKVDLEKNPRLKTVFGIAKIPDLRFVRAGRWGTYQGGRLIEA 411
+++ + ++ D+++D V L +LVDF+ C C+ ++PVL+ L AE + FK+AKVD++KNP L FG+ IP L ++ G G L +A
Sbjct: 1 MSAENIVHITDSNWDSEV--LKSAVPVLVDFWAEWCGPCRAIAPVLDELAAELAGK--------FKIAKVDVDKNPHLAGNFGVRSIPTLLVIKGGTVQEQMVGALSKA 99
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Match: Thioredoxin (n=1 Tax=Thermoplasmata archaeon TaxID=1906666 RepID=A0A5A7RS27_9ARCH) HSP 1 Score: 54.3 bits (129), Expect = 6.390e-7 Identity = 32/88 (36.36%), Postives = 50/88 (56.82%), Query Frame = 1
Query: 109 LGDNDFDDFVANLPEEALLLVDFYKPGCRHCQRLSPVLEYLEAEWEKEEPDDSKRWFKLAKVDLEKNPRLKTVFGIAKIPDLRFVRAG 372
L N+F DFV+ ++LVDF+ P C C ++P++E LE KE PD + AKV++++N + ++FGI IP L + G
Sbjct: 5 LTTNNFRDFVSR---NDIVLVDFWAPWCSPCLLIAPIIEELE----KEMPD-----VRFAKVNVDENQEIASMFGIMSIPTLMIFKGG 80
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Match: Thioredoxin (n=2 Tax=Bacteria TaxID=2 RepID=A0A2H5Y105_9BACT) HSP 1 Score: 53.9 bits (128), Expect = 1.260e-6 Identity = 35/105 (33.33%), Postives = 53/105 (50.48%), Query Frame = 1
Query: 109 LGDNDFDDFVANLPEEALLLVDFYKPGCRHCQRLSPVLEYLEAEWEKEEPDDSKRWFKLAKVDLEKNPRLKTVFGIAKIPDLRFVRAGRW-----GTYQGGRLIE 408
+ D F V P ++LVDF+ C C+ ++PV+E + E+ + R K+AKVD+++NPR+ +GI IP L F R G G G L+E
Sbjct: 6 VSDQTFAQEVLQYP--GIVLVDFWAVWCGPCRVIAPVVEEIAREY-------ADRGVKVAKVDVDRNPRVAMQYGIRAIPSLLFFRGGEHVDTVIGAVPKGYLVE 101
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Match: Thioredoxin (n=1 Tax=Chlorobi bacterium TaxID=2268192 RepID=A0A7V5VW80_9BACT) HSP 1 Score: 53.9 bits (128), Expect = 1.290e-6 Identity = 34/105 (32.38%), Postives = 54/105 (51.43%), Query Frame = 1
Query: 109 LGDNDFDDFVANLPEEALLLVDFYKPGCRHCQRLSPVLEYLEAEWEKEEPDDSKRWFKLAKVDLEKNPRLKTVFGIAKIPDLRFVRAGRW-----GTYQGGRLIE 408
+ D F V + P ++LVDF+ C C+ ++P++E + E+ + R K+AKVD+++NPR+ +GI IP L F R G G G L+E
Sbjct: 7 VSDQTFAQEVLSYP--GVVLVDFWAVWCGPCRMIAPIVEEIAREY-------ASRGVKVAKVDVDRNPRVAMQYGIRAIPSLLFFRNGEHVDTIIGAVPKGYLVE 102
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Match: Thioredoxin (n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7G068_9ACTN) HSP 1 Score: 53.5 bits (127), Expect = 1.470e-6 Identity = 29/76 (38.16%), Postives = 39/76 (51.32%), Query Frame = 1
Query: 145 LPEEALLLVDFYKPGCRHCQRLSPVLEYLEAEWEKEEPDDSKRWFKLAKVDLEKNPRLKTVFGIAKIPDLRFVRAG 372
L E +LVDF+ C CQR+SP L+ L A+WE K+ KVD+E+NP + GI +P L G
Sbjct: 17 LNAEGPVLVDFFADWCPSCQRISPTLDELAADWEGR--------LKVVKVDVERNPAMTKAHGIQSMPTLVLFEGG 84
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Match: Thioredoxin (n=2 Tax=Clostridia TaxID=186801 RepID=A0A7C6ZK79_9FIRM) HSP 1 Score: 53.1 bits (126), Expect = 2.020e-6 Identity = 36/96 (37.50%), Postives = 55/96 (57.29%), Query Frame = 1
Query: 91 SGEVHNLGDNDFDDFVANLPEEAL-LLVDFYKPGCRHCQRLSPVLEYLEAEWEKEEPDDSKRWFKLAKVDLEKNPRLKTVFGIAKIPDLRFVRAGR 375
S E+ NL D+DF+ A L +E L +LVDF+ C C+ ++PVLE + EE D R LAK+++++NPR +GI IP + + G+
Sbjct: 2 SAEILNLTDHDFE---AQLQQEQLPVLVDFWAAWCGPCRLVAPVLEEIA-----EENADRMR---LAKLNVDENPRTAEKYGIMNIPTMILFKDGK 86
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Match: Thioredoxin (n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A7X8CE61_9DELT) HSP 1 Score: 52.8 bits (125), Expect = 2.900e-6 Identity = 30/96 (31.25%), Postives = 52/96 (54.17%), Query Frame = 1
Query: 85 IASGEVHNLGDNDFDDFVANLPEEALLLVDFYKPGCRHCQRLSPVLEYLEAEWEKEEPDDSKRWFKLAKVDLEKNPRLKTVFGIAKIPDLRFVRAG 372
+A + + DN+F+ V L + +LVDF+ P C C+ ++PV+E L E+E + K+AK +++ NP+ + +GI IP L + G
Sbjct: 1 MAGKNIIEISDNNFEQEV--LKSDLPVLVDFWAPWCGPCRAIAPVVEELSGEYEGK--------LKVAKCNVDDNPKTPSKYGIRAIPTLIIFKGG 86 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig816.16313.1 >prot_E_fasciculatus_S2_contig816.16313.1 ID=prot_E_fasciculatus_S2_contig816.16313.1|Name=mRNA_E_fasciculatus_S2_contig816.16313.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=137bp MMSLVSRMRCRALRLLLAVTAMVVCSISIASGEVHNLGDNDFDDFVANLPback to top mRNA from alignment at E_fasciculatus_S2_contig816:20804..22652+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig816.16313.1 ID=mRNA_E_fasciculatus_S2_contig816.16313.1|Name=mRNA_E_fasciculatus_S2_contig816.16313.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1849bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig816:20804..22652+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig816:20804..22652+ >mRNA_E_fasciculatus_S2_contig816.16313.1 ID=mRNA_E_fasciculatus_S2_contig816.16313.1|Name=mRNA_E_fasciculatus_S2_contig816.16313.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=411bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig816:20804..22652+ (Ectocarpus fasciculatus EfasUO2)back to top |