mRNA_E_fasciculatus_S2_contig816.16313.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig816.16313.1
Unique NamemRNA_E_fasciculatus_S2_contig816.16313.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Match: Thioredoxin (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL3_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 2.550e-69
Identity = 111/136 (81.62%), Postives = 124/136 (91.18%), Query Frame = 1
Query:    1 MMSLVSRMRCRALRLLLAVTAMVVCSISIASGEVHNLGDNDFDDFVANLPEEALLLVDFYKPGCRHCQRLSPVLEYLEAEWEKEEPDDSKRWFKLAKVDLEKNPRLKTVFGIAKIPDLRFVRAGRWGTYQGGRLIE 408
            MM L++ + C ALRLL  +   VVC+I++  G VHNLGDNDFDDFVA+LPE+ALLLVDFYKPGCRHCQRL+PVL+YLEAEWEKEEPDDSKRWFKLAKVD+EKNPRLKTVFGIAK+PDLRFVRAGRWGTYQGGRLIE
Sbjct:    1 MMPLMASIPCWALRLLAVIA--VVCTIAL--GGVHNLGDNDFDDFVADLPEQALLLVDFYKPGCRHCQRLNPVLDYLEAEWEKEEPDDSKRWFKLAKVDIEKNPRLKTVFGIAKLPDLRFVRAGRWGTYQGGRLIE 132          
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Match: Thioredoxin (n=1 Tax=Syntrophaceae bacterium TaxID=2052184 RepID=A0A354C2F0_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 1.360e-7
Identity = 32/89 (35.96%), Postives = 51/89 (57.30%), Query Frame = 1
Query:  106 NLGDNDFDDFVANLPEEALLLVDFYKPGCRHCQRLSPVLEYLEAEWEKEEPDDSKRWFKLAKVDLEKNPRLKTVFGIAKIPDLRFVRAG 372
            +L D++FD+ V     E  +LVDF+ P C  C+ + PV+E L A +        K   K+AKV++++NP+  TV+G+  IP L   + G
Sbjct:    9 HLTDSNFDEEVVK--SEKPVLVDFWAPWCGPCRAIGPVVEELAAAY--------KDRVKVAKVNIDENPKTATVYGVMSIPTLILFKGG 87          
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Match: Thioredoxin (n=1 Tax=Chlorobi bacterium TaxID=2268192 RepID=A0A7V5SII0_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 3.260e-7
Identity = 32/88 (36.36%), Postives = 50/88 (56.82%), Query Frame = 1
Query:  160 LLLVDFYKPGCRHCQRLSPVLEYLEAEWEKEEPDDSKRWFKLAKVDLEKNPRLKTVFGIAKIPDLRFVRAGRW-----GTYQGGRLIE 408
            ++LVDF+   C  C+ ++PV+E +  E+       ++R  K+AKVD+++NPR+   +GI  IP L F RAG       G    G L+E
Sbjct:   21 VVLVDFWAIWCGPCRMIAPVVEEIAREY-------AERGVKVAKVDVDRNPRIAMQYGIRAIPSLLFFRAGEHVDTVIGAVPKGYLVE 101          
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Match: Thioredoxin (n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A349H0L1_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 5.300e-7
Identity = 35/109 (32.11%), Postives = 58/109 (53.21%), Query Frame = 1
Query:   85 IASGEVHNLGDNDFDDFVANLPEEALLLVDFYKPGCRHCQRLSPVLEYLEAEWEKEEPDDSKRWFKLAKVDLEKNPRLKTVFGIAKIPDLRFVRAGRWGTYQGGRLIEA 411
            +++  + ++ D+++D  V  L     +LVDF+   C  C+ ++PVL+ L AE   +        FK+AKVD++KNP L   FG+  IP L  ++ G       G L +A
Sbjct:    1 MSAENIVHITDSNWDSEV--LKSAVPVLVDFWAEWCGPCRAIAPVLDELAAELAGK--------FKIAKVDVDKNPHLAGNFGVRSIPTLLVIKGGTVQEQMVGALSKA 99          
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Match: Thioredoxin (n=1 Tax=Thermoplasmata archaeon TaxID=1906666 RepID=A0A5A7RS27_9ARCH)

HSP 1 Score: 54.3 bits (129), Expect = 6.390e-7
Identity = 32/88 (36.36%), Postives = 50/88 (56.82%), Query Frame = 1
Query:  109 LGDNDFDDFVANLPEEALLLVDFYKPGCRHCQRLSPVLEYLEAEWEKEEPDDSKRWFKLAKVDLEKNPRLKTVFGIAKIPDLRFVRAG 372
            L  N+F DFV+      ++LVDF+ P C  C  ++P++E LE    KE PD      + AKV++++N  + ++FGI  IP L   + G
Sbjct:    5 LTTNNFRDFVSR---NDIVLVDFWAPWCSPCLLIAPIIEELE----KEMPD-----VRFAKVNVDENQEIASMFGIMSIPTLMIFKGG 80          
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Match: Thioredoxin (n=2 Tax=Bacteria TaxID=2 RepID=A0A2H5Y105_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 1.260e-6
Identity = 35/105 (33.33%), Postives = 53/105 (50.48%), Query Frame = 1
Query:  109 LGDNDFDDFVANLPEEALLLVDFYKPGCRHCQRLSPVLEYLEAEWEKEEPDDSKRWFKLAKVDLEKNPRLKTVFGIAKIPDLRFVRAGRW-----GTYQGGRLIE 408
            + D  F   V   P   ++LVDF+   C  C+ ++PV+E +  E+       + R  K+AKVD+++NPR+   +GI  IP L F R G       G    G L+E
Sbjct:    6 VSDQTFAQEVLQYP--GIVLVDFWAVWCGPCRVIAPVVEEIAREY-------ADRGVKVAKVDVDRNPRVAMQYGIRAIPSLLFFRGGEHVDTVIGAVPKGYLVE 101          
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Match: Thioredoxin (n=1 Tax=Chlorobi bacterium TaxID=2268192 RepID=A0A7V5VW80_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 1.290e-6
Identity = 34/105 (32.38%), Postives = 54/105 (51.43%), Query Frame = 1
Query:  109 LGDNDFDDFVANLPEEALLLVDFYKPGCRHCQRLSPVLEYLEAEWEKEEPDDSKRWFKLAKVDLEKNPRLKTVFGIAKIPDLRFVRAGRW-----GTYQGGRLIE 408
            + D  F   V + P   ++LVDF+   C  C+ ++P++E +  E+       + R  K+AKVD+++NPR+   +GI  IP L F R G       G    G L+E
Sbjct:    7 VSDQTFAQEVLSYP--GVVLVDFWAVWCGPCRMIAPIVEEIAREY-------ASRGVKVAKVDVDRNPRVAMQYGIRAIPSLLFFRNGEHVDTIIGAVPKGYLVE 102          
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Match: Thioredoxin (n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7G068_9ACTN)

HSP 1 Score: 53.5 bits (127), Expect = 1.470e-6
Identity = 29/76 (38.16%), Postives = 39/76 (51.32%), Query Frame = 1
Query:  145 LPEEALLLVDFYKPGCRHCQRLSPVLEYLEAEWEKEEPDDSKRWFKLAKVDLEKNPRLKTVFGIAKIPDLRFVRAG 372
            L  E  +LVDF+   C  CQR+SP L+ L A+WE           K+ KVD+E+NP +    GI  +P L     G
Sbjct:   17 LNAEGPVLVDFFADWCPSCQRISPTLDELAADWEGR--------LKVVKVDVERNPAMTKAHGIQSMPTLVLFEGG 84          
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Match: Thioredoxin (n=2 Tax=Clostridia TaxID=186801 RepID=A0A7C6ZK79_9FIRM)

HSP 1 Score: 53.1 bits (126), Expect = 2.020e-6
Identity = 36/96 (37.50%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   91 SGEVHNLGDNDFDDFVANLPEEAL-LLVDFYKPGCRHCQRLSPVLEYLEAEWEKEEPDDSKRWFKLAKVDLEKNPRLKTVFGIAKIPDLRFVRAGR 375
            S E+ NL D+DF+   A L +E L +LVDF+   C  C+ ++PVLE +      EE  D  R   LAK+++++NPR    +GI  IP +   + G+
Sbjct:    2 SAEILNLTDHDFE---AQLQQEQLPVLVDFWAAWCGPCRLVAPVLEEIA-----EENADRMR---LAKLNVDENPRTAEKYGIMNIPTMILFKDGK 86          
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Match: Thioredoxin (n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A7X8CE61_9DELT)

HSP 1 Score: 52.8 bits (125), Expect = 2.900e-6
Identity = 30/96 (31.25%), Postives = 52/96 (54.17%), Query Frame = 1
Query:   85 IASGEVHNLGDNDFDDFVANLPEEALLLVDFYKPGCRHCQRLSPVLEYLEAEWEKEEPDDSKRWFKLAKVDLEKNPRLKTVFGIAKIPDLRFVRAG 372
            +A   +  + DN+F+  V  L  +  +LVDF+ P C  C+ ++PV+E L  E+E +         K+AK +++ NP+  + +GI  IP L   + G
Sbjct:    1 MAGKNIIEISDNNFEQEV--LKSDLPVLVDFWAPWCGPCRAIAPVVEELSGEYEGK--------LKVAKCNVDDNPKTPSKYGIRAIPTLIIFKGG 86          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig816.16313.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Thioredoxin2.550e-6981.62domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Thioredoxin1.360e-735.96n=1 Tax=Syntrophaceae bacterium TaxID=2052184 RepI... [more]
Thioredoxin3.260e-736.36n=1 Tax=Chlorobi bacterium TaxID=2268192 RepID=A0A... [more]
Thioredoxin5.300e-732.11n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 Re... [more]
Thioredoxin6.390e-736.36n=1 Tax=Thermoplasmata archaeon TaxID=1906666 RepI... [more]
Thioredoxin1.260e-633.33n=2 Tax=Bacteria TaxID=2 RepID=A0A2H5Y105_9BACT[more]
Thioredoxin1.290e-632.38n=1 Tax=Chlorobi bacterium TaxID=2268192 RepID=A0A... [more]
Thioredoxin1.470e-638.16n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 Rep... [more]
Thioredoxin2.020e-637.50n=2 Tax=Clostridia TaxID=186801 RepID=A0A7C6ZK79_9... [more]
Thioredoxin2.900e-631.25n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A7... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig816contigE_fasciculatus_S2_contig816:20804..22652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score225.7
Seed ortholog evalue1.3e-56
Seed eggNOG ortholog2880.D8LNL3
Preferred nameTMX3
Model size412
KEGG koko:K09585,ko:K13996
KEGG Pathwayko04141,map04141
Hectar predicted targeting categorysignal peptide
GOsGO:0002576,GO:0003674,GO:0003756,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006457,GO:0006464,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0008150,GO:0008152,GO:0009986,GO:0009987,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0016192,GO:0016491,GO:0016667,GO:0016670,GO:0016853,GO:0016860,GO:0016864,GO:0016972,GO:0018158,GO:0018171,GO:0018193,GO:0018198,GO:0019538,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031091,GO:0031092,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032940,GO:0033554,GO:0034976,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055114,GO:0071704,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0098827,GO:0099503,GO:0140096,GO:1901564
Exons3
EggNOG free text desc.peptidyl-cysteine oxidation
EggNOG OGsCOG0526@1,KOG4277@2759
EC5.3.4.1
Cds size411
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842477.7100558-CDS-E_fasciculatus_S2_contig816:20803..209861696842477.7100558-CDS-E_fasciculatus_S2_contig816:20803..20986Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig816 20804..20986 +
1696842477.7251735-CDS-E_fasciculatus_S2_contig816:21824..219651696842477.7251735-CDS-E_fasciculatus_S2_contig816:21824..21965Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig816 21825..21965 +
1696842477.739207-CDS-E_fasciculatus_S2_contig816:22565..226521696842477.739207-CDS-E_fasciculatus_S2_contig816:22565..22652Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig816 22566..22652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig816.16313.1prot_E_fasciculatus_S2_contig816.16313.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig816 20804..22652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig816.16313.1

>prot_E_fasciculatus_S2_contig816.16313.1 ID=prot_E_fasciculatus_S2_contig816.16313.1|Name=mRNA_E_fasciculatus_S2_contig816.16313.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=137bp
MMSLVSRMRCRALRLLLAVTAMVVCSISIASGEVHNLGDNDFDDFVANLP
EEALLLVDFYKPGCRHCQRLSPVLEYLEAEWEKEEPDDSKRWFKLAKVDL
EKNPRLKTVFGIAKIPDLRFVRAGRWGTYQGGRLIEA
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mRNA from alignment at E_fasciculatus_S2_contig816:20804..22652+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig816.16313.1 ID=mRNA_E_fasciculatus_S2_contig816.16313.1|Name=mRNA_E_fasciculatus_S2_contig816.16313.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1849bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig816:20804..22652+ (Ectocarpus fasciculatus EfasUO2)
ATGATGTCGCTGGTGTCTCGCATGCGTTGTCGGGCTCTTCGGCTGCTGCT GGCGGTGACCGCCATGGTTGTTTGTTCGATTTCGATTGCCTCGGGGGAGG TTCACAACCTTGGAGACAACGACTTCGACGACTTCGTCGCCAACCTTCCT GAAGAAGCGCTCCTGTTGGTCGACTTCTACAAGGTAAGACAAACAGGCTT GTCGGCGTGCCTGGAATTGTGGTGTCTGCTGAGGTGCTGGAGAGCGGAGC GATTCCGCAGCGTCACGGAACCGCTTTGTCGTGTGTGTGAGGCGGTGTAG CTGGCTCTCCACTCTGCCACTCACCACCAAGGTGTTGGTGAGGATAAGGG TGCGGCAGGTGTTGTTACGTCGATGTGTGGTATTCCCCCTCCATTCTGCC GGTCCTTTTCCAATTTCCAACATGTTCTCATTCGTCGATTATCAACAGCA GTACAAAAATAGTAGATCCTGATAGTATCGGGTAGGTGGTTCAAGTGGAC ATGCGTCGTGCCTGTGGGCCTTCCTGTGACAGACACGTGTTACACTTACT GCTGTTGTACGCCGAGCAGTAGCAATACCCACCTGACTTTCCGACCCCGG AAGTACGTCCTACGTCTTCTGTGCATCCGTAGGCAGACAATTGTGCTCGA AATTACTACTCGAGTATTTGTTTCTCGACGAACTGCCAGCCAGGGCATTT ACATCAGTAGTGCGATAGACCACTGCTGTACGCGCAATCCGCACGGCTGT ATAGTCTATGCGTTCGAAAGGAAAAGGATGGAAACATCGAAACGGGGGGC GCTGACGGCGGCAACATTAACGAACACTGCAACAGCGGCAAATACGTCAT CTATGCATAGCGTTTCCAATTGATCAATTGATGCTTCTCGATCACTCTGT CTGTCGGTCTCCTTCGGGCGAAATGCACCCCTGATGTACTCAAAACAACC CGTTCTCGCGCTCCCCCCCCTCACGCCTTTGCCCCCCCTCTCTCTTTGCT TACGGAAAAATAACACCCAAGCCTGGCTGCAGACATTGCCAGAGACTGAG CCCAGTTCTAGAGTACCTCGAGGCCGAATGGGAGAAAGAAGAGCCGGACG ACTCGAAGCGATGGTTCAAGCTTGCCAAGGTCGACCTCGAAAAGAACCCT CGTCTCAAGACGGTGAGTTACTTGTGTTGCCCACCTGCGAACACTCCTGC TGTGTTCTCGGCCCTGATGGTGGCTTGGTCGCAAAATCTTGGCTAGTATT TCTCAAGGACCTCCTGTTCCTGTTCTCTTCCTGCTTCTGATAGCAGCGTT TGTCTACCGCAGGCGGGTATAGCAGGGTGCAGACGCAGATGCTCATTTTG GGGGCTGGCTGTGTGAGTCAAGCCGGCGTCGCGTGCGTGTGCTGTGGCAG GCTGAAGTGCTCAAGTAGATACAGGAACACGAACACGAACACGTTACATT GTAGTCCTGACATGGCTTTTCTTTGTTCTTCCTCCCGTCTCCTCTCATGC GGACGACCACAGCGTCAGAAAGTTCTCCTGGCTCCTGGGGGCGGTGATCC ACTCTTGTGGGCGAGACAAAGGGTCATTGACGATATACAGATGTAAAGGT CGCGCGGCATCATGGCTATCCTACGGTGCTTGATGTGGTGACGAGTGGTT ACTAGTCTTTAGGTTCGATCCCGTCCCGTTTGAACTGGTTCCACCCCGTC TGTTTCTGTCCCATCCCGCCTTCCGCCCTTGTGCAACCGCAATCGCCAAT CTACTTGGGAAGGTGTTTGGAATAGCGAAAATTCCGGACCTCCGCTTCGT TCGAGCAGGACGGTGGGGCACGTACCAGGGGGGACGACTGATCGAGGCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig816:20804..22652+

>mRNA_E_fasciculatus_S2_contig816.16313.1 ID=mRNA_E_fasciculatus_S2_contig816.16313.1|Name=mRNA_E_fasciculatus_S2_contig816.16313.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=411bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig816:20804..22652+ (Ectocarpus fasciculatus EfasUO2)
ATGATGTCGCTGGTGTCTCGCATGCGTTGTCGGGCTCTTCGGCTGCTGCT
GGCGGTGACCGCCATGGTTGTTTGTTCGATTTCGATTGCCTCGGGGGAGG
TTCACAACCTTGGAGACAACGACTTCGACGACTTCGTCGCCAACCTTCCT
GAAGAAGCGCTCCTGTTGGTCGACTTCTACAAGCCTGGCTGCAGACATTG
CCAGAGACTGAGCCCAGTTCTAGAGTACCTCGAGGCCGAATGGGAGAAAG
AAGAGCCGGACGACTCGAAGCGATGGTTCAAGCTTGCCAAGGTCGACCTC
GAAAAGAACCCTCGTCTCAAGACGGTGTTTGGAATAGCGAAAATTCCGGA
CCTCCGCTTCGTTCGAGCAGGACGGTGGGGCACGTACCAGGGGGGACGAC
TGATCGAGGCG
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