mRNA_E_fasciculatus_S2_contig8141.16296.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8141.16296.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD86_ECTSI) HSP 1 Score: 405 bits (1042), Expect = 2.620e-136 Identity = 205/208 (98.56%), Postives = 205/208 (98.56%), Query Frame = 1
Query: 19 SGGGITSKVDVTYLNFFLKEFNASVPLTTQDILRDALNPVPAALTERSFHGDEEYRRQNARVAVIQGCITIGALLKGHTQVVGYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTNTISKAQ 642
SGGGITSKVDVTYLNFFLKEFNA VPLTTQDILRDAL PVPAALTERSFHGDEEYRRQNARVAVIQGCITIGALLKGHTQVVGYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSA PKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTNTISKAQ
Sbjct: 96 SGGGITSKVDVTYLNFFLKEFNAFVPLTTQDILRDALYPVPAALTERSFHGDEEYRRQNARVAVIQGCITIGALLKGHTQVVGYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSAIPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTNTISKAQ 303
BLAST of mRNA_E_fasciculatus_S2_contig8141.16296.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD81_ECTSI) HSP 1 Score: 400 bits (1028), Expect = 2.320e-134 Identity = 202/209 (96.65%), Postives = 204/209 (97.61%), Query Frame = 1
Query: 16 LSGGGITSKVDVTYLNFFLKEFNASVPLTTQDILRDALNPVPAALTERSFHGDEEYRRQNARVAVIQGCITIGALLKGHTQVVGYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTNTISKAQ 642
LSGGGITSKVDVTYLNFFLKEFNA VPLTTQDILRDALNPVPAALTERSFHGDEEYRRQNARVAVIQGCITIGALLKGHTQ VGYLRNVREALTNSF FVSS+ +AYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTNTISKAQ
Sbjct: 93 LSGGGITSKVDVTYLNFFLKEFNAFVPLTTQDILRDALNPVPAALTERSFHGDEEYRRQNARVAVIQGCITIGALLKGHTQGVGYLRNVREALTNSFHFVSSQKKNAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTNTISKAQ 301
BLAST of mRNA_E_fasciculatus_S2_contig8141.16296.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W2_9PHAE) HSP 1 Score: 380 bits (975), Expect = 8.580e-130 Identity = 195/205 (95.12%), Postives = 197/205 (96.10%), Query Frame = 1
Query: 31 ITSKVDVTYLNFFLKEFNASVPLTTQDILRDALNPVPAALTERSFHGDEEYRRQNARVAVIQGCITIGALLKGHTQVVGYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTNTISKAQA 645
ITSKVDVTYLNFFLKEFNA VPLTTQ ILRDALNPVP ALTERSFHGDEE+ NARVAVIQGCITIGALLKGHTQV YLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAE+LTNTISKAQA
Sbjct: 11 ITSKVDVTYLNFFLKEFNAFVPLTTQGILRDALNPVPEALTERSFHGDEEF---NARVAVIQGCITIGALLKGHTQVAVYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEKLTNTISKAQA 212
BLAST of mRNA_E_fasciculatus_S2_contig8141.16296.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S8_9PHAE) HSP 1 Score: 211 bits (536), Expect = 6.750e-63 Identity = 149/334 (44.61%), Postives = 154/334 (46.11%), Query Frame = 1
Query: 136 VPAALTERSFHGDEEYRRQNARVA---VIQGCITIGA-----LLKGH------------------TQVVGYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAA--------------------------------------------------------------------------------------------------------------------------------TRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQ----------VLNVLTYALYDLAHLAAEELTNTISKAQA 645
+PAALTER FHGDEEYRRQ R + V+ C A + K H QVVGYLRNV EALTNSFDFVSSETMSAYMVTAYCHDLMGNAAA NYMEFA+AVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQ VLNVLTYALYDLAHLAAEELTNTISKAQA
Sbjct: 1 MPAALTERLFHGDEEYRRQVTRASDRGVLSACTMRKADGAKGVRKNHGALKVMRKAAVVSHNPPLPQVVGYLRNVLEALTNSFDFVSSETMSAYMVTAYCHDLMGNAAAIGRFLGVGCGSSPDDMIGKFAEQLEYTPSRWREGVVVNLFKKGDKTDPGNNRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKERGCVDHVFTVGRIIQGRKRAGKPTYTSTTQVALADYVGNYMEFAEAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQARSLESVRFMVLNVLTYALYDLAHLAAEELTNTISKAQA 334
BLAST of mRNA_E_fasciculatus_S2_contig8141.16296.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV1_9PHAE) HSP 1 Score: 166 bits (421), Expect = 9.720e-49 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1
Query: 397 MEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTNTISKAQA 645
MEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTNTISKAQA
Sbjct: 1 MEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTNTISKAQA 83
BLAST of mRNA_E_fasciculatus_S2_contig8141.16296.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF2_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 1.050e-21 Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 1
Query: 256 QVVGYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEF 405
QVVGYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATR +EF
Sbjct: 34 QVVGYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATRYAIEF 83
BLAST of mRNA_E_fasciculatus_S2_contig8141.16296.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRN3_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 1.140e-6 Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 1
Query: 4 MAAALSGGGITSKVDVTYLNFFLKEFNAS 90
MAAALSGGGITSKVDVTYLNFFLKEFNA+
Sbjct: 237 MAAALSGGGITSKVDVTYLNFFLKEFNAA 265 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8141.16296.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8141.16296.1 >prot_E_fasciculatus_S2_contig8141.16296.1 ID=prot_E_fasciculatus_S2_contig8141.16296.1|Name=mRNA_E_fasciculatus_S2_contig8141.16296.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=214bp MAAALSGGGITSKVDVTYLNFFLKEFNASVPLTTQDILRDALNPVPAALTback to top mRNA from alignment at E_fasciculatus_S2_contig8141:251..3805+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8141.16296.1 ID=mRNA_E_fasciculatus_S2_contig8141.16296.1|Name=mRNA_E_fasciculatus_S2_contig8141.16296.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3555bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8141:251..3805+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8141:251..3805+ >mRNA_E_fasciculatus_S2_contig8141.16296.1 ID=mRNA_E_fasciculatus_S2_contig8141.16296.1|Name=mRNA_E_fasciculatus_S2_contig8141.16296.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=642bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8141:251..3805+ (Ectocarpus fasciculatus EfasUO2)back to top |