mRNA_E_fasciculatus_S2_contig8118.16274.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8118.16274.1
Unique NamemRNA_E_fasciculatus_S2_contig8118.16274.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8118.16274.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN77_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 4.720e-45
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 1 
Query:   16 YFADEYRKSSMYWSSLCDVMSANDGPTQQVLSYVAGKLEADRVNTAAIFANADKVFGEKKGVTKLRHDKIRHEEQKAKTKGVT 264
            YFADEYRKSSMYWSSLCDVMSANDGPTQQVLSYVAGKLEADR+NTAAIF NADKVFGEKKG TKLRHDKIRHEEQKAKTKGVT
Sbjct:   27 YFADEYRKSSMYWSSLCDVMSANDGPTQQVLSYVAGKLEADRINTAAIFVNADKVFGEKKGATKLRHDKIRHEEQKAKTKGVT 109
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BLAST of mRNA_E_fasciculatus_S2_contig8118.16274.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7U6_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 5.440e-44
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 1 
Query:   16 YFADEYRKSSMYWSSLCDVMSANDGPTQQVLSYVAGKLEADRVNTAAIFANADKVFGEKKGVTKLRHDKIRHEEQKAKTKGVT 264
            YFADEYRKSSMYWSSLCDVMS NDGPTQQVLSYVAGKLEADRVNTAAIFANADK+F EKKG TKLRHDKIRHEEQKAKTKGVT
Sbjct:   27 YFADEYRKSSMYWSSLCDVMSLNDGPTQQVLSYVAGKLEADRVNTAAIFANADKLFDEKKGATKLRHDKIRHEEQKAKTKGVT 109
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8118.16274.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.720e-4596.39protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.440e-4495.18protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8118contigE_fasciculatus_S2_contig8118:5421..6733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size265
Hectar predicted targeting categoryother localisation
Exons3
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842472.9180474-CDS-E_fasciculatus_S2_contig8118:5420..55221696842472.9180474-CDS-E_fasciculatus_S2_contig8118:5420..5522Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8118 5421..5522 +
1696842472.9376128-CDS-E_fasciculatus_S2_contig8118:5961..60711696842472.9376128-CDS-E_fasciculatus_S2_contig8118:5961..6071Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8118 5962..6071 +
1696842472.9526765-CDS-E_fasciculatus_S2_contig8118:6681..67331696842472.9526765-CDS-E_fasciculatus_S2_contig8118:6681..6733Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8118 6682..6733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8118.16274.1prot_E_fasciculatus_S2_contig8118.16274.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8118 5421..6733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8118.16274.1

>prot_E_fasciculatus_S2_contig8118.16274.1 ID=prot_E_fasciculatus_S2_contig8118.16274.1|Name=mRNA_E_fasciculatus_S2_contig8118.16274.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=88bp
MNNNRYFADEYRKSSMYWSSLCDVMSANDGPTQQVLSYVAGKLEADRVNT
AAIFANADKVFGEKKGVTKLRHDKIRHEEQKAKTKGVT
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mRNA from alignment at E_fasciculatus_S2_contig8118:5421..6733+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8118.16274.1 ID=mRNA_E_fasciculatus_S2_contig8118.16274.1|Name=mRNA_E_fasciculatus_S2_contig8118.16274.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1313bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8118:5421..6733+ (Ectocarpus fasciculatus EfasUO2)
ATGAACAACAACAGGTACTTCGCGGATGAGTACCGCAAGTCCTCCATGTA
CTGGTCAAGCCTGTGCGACGTCATGAGCGCAAACGACGGGCCCACTCAGC
AGGTGGGTACAGTGTGGCGATGCAGCTGTTTTTATTTTTGTCTCGAGTTA
AGGACGTGTTGATCAAGCCACGGCATCGACTTGTGTGGATGTGGTTTGCT
TGCTTGGCGGAGCCCCCAAGAGTGGGTTCCCCGCAGGCGAATGCTTGTTG
TAGACAAGCGTCTGTCTGTGTGTGCGAGCGTTGAGCTCATGCTTGCAGTG
ACGGGCGGCGGCGTGTGACCATCGTTTGTTCCACGACCGCGGTGCATGTT
GTCGCCGTCGTGGTCATCTCCTTTGACTCTGCCTGGGCTGAACAGGTGCC
GACTATTGATGTGGCAGCTTCTCTTCCAGTTTTCATGGAAGCTGGACTGT
GGCAGCTTCTTCTCTTCTTAACTCCTTACTCGGGTGTTCCGGTGGTACAA
CACTCTGTCGTTGCTGTTCTGGCCTCTGATGACTCGGGCAGGTGCTGTCG
TATGTTGCGGGCAAGCTGGAGGCGGACCGCGTGAACACCGCGGCCATCTT
CGCCAACGCCGACAAGGTCTTCGGCGAAAAGAAGGGCGTCACCAAGCTGA
GGTGCGCGCGCAGGCAGTGGGGGTGCCAGTTTAGTGCCGGTGTTGTTTTT
TTTTGTTGCGGCCGGAATCACGCAAGTCACTGTACACTTTCAATAGAGCC
GGTGTCTGGAATAGTGCCGGTGTTTTTTGTTTTTTTGTTGTTGCGGCCGG
AATCACGCAAGTCACTGTGCACTTTCAATAGAGCCGGGGTCCGGAATAGT
GCCGGTCAACTTTCTCTGGGCGCTTACCTGCACTCAAGAGGGCCCCGCAC
TGCAAATGGTGTTTTTGTGCCTTTGTGCCCTGTCCCGGCGATCATAACGC
CGACCCGGGCGACTTTGCTTTCGTGTCGGGTGCGGAAGAAGGGGCGACGC
GCCGATCGAAGTAAAGCGCACCTCGTGCGTCATGACCAGACCATCGTACA
CCGTCCCCTGCAGATTACTCCTCTCTCTATTTCCTACAAACCTCGTCCGG
GTTCCGTGATTATTGTGTAGGTTGTACGACACGCTATTTTGTGTTGTCGT
CCCGATTTGCTTTACTTGTACTTTGGTTTTACGTTCATTTCTTGGCATTC
ACCAACCCCTCCAGAGTTCTCCTAGTTAATCGCCCTCTTCTGTCTTGCCT
TTGCGACCCAGGCACGACAAGATTCGCCATGAGGAGCAGAAGGCTAAGAC
CAAGGGCGTGACA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8118:5421..6733+

>mRNA_E_fasciculatus_S2_contig8118.16274.1 ID=mRNA_E_fasciculatus_S2_contig8118.16274.1|Name=mRNA_E_fasciculatus_S2_contig8118.16274.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=264bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8118:5421..6733+ (Ectocarpus fasciculatus EfasUO2)
ATGAACAACAACAGGTACTTCGCGGATGAGTACCGCAAGTCCTCCATGTA
CTGGTCAAGCCTGTGCGACGTCATGAGCGCAAACGACGGGCCCACTCAGC
AGGTGCTGTCGTATGTTGCGGGCAAGCTGGAGGCGGACCGCGTGAACACC
GCGGCCATCTTCGCCAACGCCGACAAGGTCTTCGGCGAAAAGAAGGGCGT
CACCAAGCTGAGGCACGACAAGATTCGCCATGAGGAGCAGAAGGCTAAGA
CCAAGGGCGTGACA
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