mRNA_E_fasciculatus_S2_contig808.16235.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig808.16235.1
Unique NamemRNA_E_fasciculatus_S2_contig808.16235.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig808.16235.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig808contigE_fasciculatus_S2_contig808:1656..3519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score60.8
Seed ortholog evalue4.8e-07
Seed eggNOG ortholog2880.D7FU35
Model size371
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Cds size354
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842468.4900062-CDS-E_fasciculatus_S2_contig808:1655..18201696842468.4900062-CDS-E_fasciculatus_S2_contig808:1655..1820Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig808 1656..1820 +
1696842468.5010955-CDS-E_fasciculatus_S2_contig808:3315..35041696842468.5010955-CDS-E_fasciculatus_S2_contig808:3315..3504Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig808 3316..3504 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842468.5106416-UTR-E_fasciculatus_S2_contig808:3504..35191696842468.5106416-UTR-E_fasciculatus_S2_contig808:3504..3519Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig808 3505..3519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig808.16235.1prot_E_fasciculatus_S2_contig808.16235.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig808 1656..3504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig808.16235.1

>prot_E_fasciculatus_S2_contig808.16235.1 ID=prot_E_fasciculatus_S2_contig808.16235.1|Name=mRNA_E_fasciculatus_S2_contig808.16235.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=118bp
WLEEAGEVGIPQEELPELWVQTRLSGGAGNERSGHCRLHTTRPCWFVVDY
SNPSSDDLLLGKGSHTKHAKSFEVDGVRGASLFASSDVAVQLVDRVGIGA
RWAWVRTVSVDQFVSQA*
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mRNA from alignment at E_fasciculatus_S2_contig808:1656..3519+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig808.16235.1 ID=mRNA_E_fasciculatus_S2_contig808.16235.1|Name=mRNA_E_fasciculatus_S2_contig808.16235.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1864bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig808:1656..3519+ (Ectocarpus fasciculatus EfasUO2)
TGGCTCGAAGAGGCGGGCGAGGTTGGGATCCCACAGGAAGAGCTACCAGA
GCTCTGGGTTCAAACCCGTTTGAGTGGTGGCGCTGGAAACGAGAGGAGTG
GACACTGTCGGCTACATACCACGCGTCCGTGTTGGTTCGTCGTAGACTAC
AGTAATCCTTCGTCGGTGAGTCCGTGACTTCCTGTGGTTAACCCTCCTAC
AGGCAGTAGTACCCAGTCCCTCTGCAAAAAAAAAGTCGAAAAAATGCTTG
TCGGTCGTTGGTCGAGGGGCTGCAATCCCTCCAAAGAATCTGAGCTCCTT
GCCAGACAAAGGGTGACTTGGCTTCAGTATGAAAAGTGTCCCCACGTTTT
TTGGGACACTCTTCATACTTTTAGCCAAGTCAGCGAATAAATTTTTCCAG
TTCTAGGCGATGTACAGTTTTACGACCTCGGGGACACGCGGCTTGGGAGA
TGGTGACAGCAAGTCAGAGGCCGAGGAGAGGCACCACACAGCATATCCCA
CAGCGTACCACCTCAGCCAAGCATGACGGGCCAAGAGTTCTTACGTGCGT
TTCACACAGCGGTGCCTAGGGTGACTACGGTGCGGTAAGTGGACATTTGA
GTGATGTGTCCCCAAAAGGGCCTCCAGTTGATTTTGCACACCTCGTGCTT
TTTAGTCGACGCGTGCCGCAGATTAGATTGAAAATCTCTGGTGTTCACAC
GTCATCTGGAAAGAATGCTGCGGCCAGCTGGAACGCTCTATTTTTCTCCC
AGCTGCTGACAAGGGCTCGATCGGCAACAGTTCGTGTGAGTGTTGTACCT
TGCACCGCCGACAGTGCTCCTTCGATCTCTTCCACTTGCTTGTGCGTTCG
CTAATAGCGCAGACAGCAAGGAAGAGCATCCAACCCGATCGAAACAATTT
TCTCCATTTGTTTAGCGAGGTTCCAGTAGCATCACCTGGCGCTTCTGTAA
CGGCAACAGATATAGATGGCGCGATCATTGCAACCAAAACAACAGAGGAG
TGGAAGTGTGCCGTCAGGGCGCTCTTTCTCAACGGGCGTTCACCTCTTGA
CTAGACGGTAGGAAGTGCGAACAAAAACACACGCCCCGCCACACCAGATC
GGGGCTATATTCAGTTCAGTGCTTTAAGAAGTAGACGCGAAACGCCTCAA
ACGGCAGGCGGCCACCGTAGGTAACACGAGATACCTCGATGACATGTGTG
CGGACCAAGTGGCACTCGAGGTGAAATTCTGTAGGGTAGGTGGAGAAGGT
TTTCGCCCTTTCGCTTGATCTGAGAGTATGATTGTTAGCCGCAGGCCGGC
ATGGTTGTGTTGCAGGGATAGCTGGGTGTGGTACCTTGTGGTTTGGTGCG
TCCGAACGTACCGAAAAATAAAGGCTGATTCCCAGGGTACATGAGACAAC
GTCGTGAGACAACGTCGTACACCCAATAGTGGGTCTGCTTGCGTGTACGT
GGTGGAATCCTGCGCGGACATGAACCTGCACGTGCTTGCTTTGCTGGCCG
TGCGTAGCCATGAGCCTTTACTCGCCTAGGCGTGTGGTGTCATGCCGGAG
CGACGGCGAGTCCACACCCTTCGACGGTGGCACTCATAATCGCACGACCG
TCTACGGTCGATCCTCTTCTTCCGCACTCTCAACCCACACCTTCGGCGTC
TTCCTATAAGGATGACCTTCTCCTGGGCAAGGGCTCGCATACGAAACATG
CCAAGAGTTTCGAGGTGGATGGAGTGCGGGGCGCTTCCCTCTTCGCAAGC
TCCGACGTCGCCGTGCAGCTCGTGGACAGGGTGGGCATAGGGGCAAGGTG
GGCATGGGTAAGGACCGTAAGCGTTGACCAGTTCGTGAGTCAAGCTTGAG
GTCGAACTGCGTTA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig808:1656..3519+

>mRNA_E_fasciculatus_S2_contig808.16235.1 ID=mRNA_E_fasciculatus_S2_contig808.16235.1|Name=mRNA_E_fasciculatus_S2_contig808.16235.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=354bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig808:1656..3519+ (Ectocarpus fasciculatus EfasUO2)
TGGCTCGAAGAGGCGGGCGAGGTTGGGATCCCACAGGAAGAGCTACCAGA
GCTCTGGGTTCAAACCCGTTTGAGTGGTGGCGCTGGAAACGAGAGGAGTG
GACACTGTCGGCTACATACCACGCGTCCGTGTTGGTTCGTCGTAGACTAC
AGTAATCCTTCGTCGGATGACCTTCTCCTGGGCAAGGGCTCGCATACGAA
ACATGCCAAGAGTTTCGAGGTGGATGGAGTGCGGGGCGCTTCCCTCTTCG
CAAGCTCCGACGTCGCCGTGCAGCTCGTGGACAGGGTGGGCATAGGGGCA
AGGTGGGCATGGGTAAGGACCGTAAGCGTTGACCAGTTCGTGAGTCAAGC
TTGA
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