mRNA_E_fasciculatus_S2_contig8060.16222.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8060.16222.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN45_ECTSI) HSP 1 Score: 279 bits (713), Expect = 1.290e-93 Identity = 149/176 (84.66%), Postives = 161/176 (91.48%), Query Frame = 1
Query: 19 DSLYDLALCRTSGAFLMAAQISSVPSPEGTFCLALDLKNDEDVTFSDTLGFVVNNAILIVQFVLLLAMFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIGITFTYTVTTVIVVLGFLTTAPGSDKAGQLADLLPTANIFVTLCLTEIALPLGCSSCVKSIKAETSSA-DSERQRTV 543
DS Y LALCRT+GAF++A+Q+SSVPSPEG FCLALDL+ +EDVTFSDTLGFV NN IL++QFVLLLAMFVKPLMIPQGH QSGGAVYRRLVMRNVACTIGITFTY VTTVIVVLGFLTTAPGS KA QLADLLPTANIFVTLC+TE++LPLG SSCVKSIKAETSS DSER TV
Sbjct: 12 DSPYALALCRTTGAFILASQVSSVPSPEGNFCLALDLQENEDVTFSDTLGFVFNNGILVIQFVLLLAMFVKPLMIPQGHIQSGGAVYRRLVMRNVACTIGITFTYAVTTVIVVLGFLTTAPGSIKAAQLADLLPTANIFVTLCVTEMSLPLGFSSCVKSIKAETSSVVDSERHPTV 187
BLAST of mRNA_E_fasciculatus_S2_contig8060.16222.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA3_9PHAE) HSP 1 Score: 260 bits (664), Expect = 8.610e-84 Identity = 142/166 (85.54%), Postives = 149/166 (89.76%), Query Frame = 1
Query: 49 TSGAFLMAAQISSVPSPEGTFCLALDLKNDEDVTFSDTLGFVVNNAILIVQFVLLLAMFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIGITFTYTVTTVIVVLGFLTTAPGSDKAGQLADLLPTANIFVTLCLTEIALPLGCSSCVKSIKAETSSA-DSERQRTV 543
T+GA +AAQ SSVPS EGTFCL LDLK DEDVTFSDTLGFV+NN ILI+QF LLLAMFVKPLMIPQGHTQSGGAVYRRLVMRNVACTI ITFTY VTTVIVVLGFLTTAPGS KA QLADLLPTANIFVTLCLTEI+LPLG SSCVK+IKAETSS DSE +TV
Sbjct: 153 TTGALFLAAQASSVPSLEGTFCLTLDLKEDEDVTFSDTLGFVINNGILIIQFALLLAMFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIAITFTYAVTTVIVVLGFLTTAPGSIKAAQLADLLPTANIFVTLCLTEISLPLGFSSCVKAIKAETSSVVDSEIHQTV 318
BLAST of mRNA_E_fasciculatus_S2_contig8060.16222.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K249_9PHAE) HSP 1 Score: 254 bits (648), Expect = 2.280e-83 Identity = 134/156 (85.90%), Postives = 143/156 (91.67%), Query Frame = 1
Query: 49 TSGAFLMAAQISSVPSPEGTFCLALDLKNDEDVTFSDTLGFVVNNAILIVQFVLLLAMFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIGITFTYTVTTVIVVLGFLTTAPGSDKAGQLADLLPTANIFVTLCLTEIALPLGCSSCVKSIKAETSS 516
T+GAF +AAQ SSVPS EGTFCL LDL+ DEDVTFSD LGFV+NN ILI+QF LLLA+FVKPLMIPQGHTQSGGAVYRRLVMRNVACTI ITFTY VTTVIVVLGFLTTAPGS KA QLADLLPTANIFVTLCLTE++LPLG SSCVK+IKAETSS
Sbjct: 52 TTGAFFLAAQASSVPSLEGTFCLTLDLQEDEDVTFSDALGFVINNGILIIQFALLLAIFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIAITFTYAVTTVIVVLGFLTTAPGSIKAAQLADLLPTANIFVTLCLTELSLPLGFSSCVKAIKAETSS 207
BLAST of mRNA_E_fasciculatus_S2_contig8060.16222.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA0_9PHAE) HSP 1 Score: 125 bits (315), Expect = 4.860e-32 Identity = 64/120 (53.33%), Postives = 85/120 (70.83%), Query Frame = 1
Query: 100 EGTFCLALDLKNDEDVTFSDTLGFVVNNAILIVQFVLLLAMFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIGITFTYTVTTVIVVLGFLTTAPGSDKAGQLADLLPTANIFVTLCLTEI 459
EGT C + E D GF NN +L VQ+VLLLAMF+KP+++ G+TQSGGAVYRR+V+RN+ CTIGI Y +TTV+VVL L++ P +DKA + D++P+ NI VTLCLTE+
Sbjct: 124 EGTACFNSYGEETETREVGDVAGFAGNNVLLTVQYVLLLAMFIKPMLVSHGNTQSGGAVYRRVVIRNIVCTIGIACAYVITTVVVVLALLSSRPDTDKAAAVGDIVPSINICVTLCLTEV 243
BLAST of mRNA_E_fasciculatus_S2_contig8060.16222.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN53_ECTSI) HSP 1 Score: 119 bits (297), Expect = 3.470e-31 Identity = 59/99 (59.60%), Postives = 78/99 (78.79%), Query Frame = 1
Query: 163 LGFVVNNAILIVQFVLLLAMFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIGITFTYTVTTVIVVLGFLTTAPGSDKAGQLADLLPTANIFVTLCLTEI 459
+GF NNA+L VQFVLLLAMF+KP+++PQG TQSGGAVYRR+V+RN+ CT+GI Y +TTV+VVL ++T ++KA L + P+ NI VTLCLTE+
Sbjct: 2 IGFASNNALLTVQFVLLLAMFIKPMLLPQGGTQSGGAVYRRVVVRNIVCTVGIACAYVITTVVVVLAHVSTPSDTNKAAVLGHITPSINICVTLCLTEV 100
BLAST of mRNA_E_fasciculatus_S2_contig8060.16222.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C9_ECTSI) HSP 1 Score: 120 bits (302), Expect = 7.520e-31 Identity = 68/164 (41.46%), Postives = 101/164 (61.59%), Query Frame = 1
Query: 58 AFLMAAQISSVPSPEGTFCL--ALDLKNDEDVTFSDTLGFVVNNAILIVQFVLLLAMFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIGITFTYTVTTVIVVLGFLTTAPGSDKAGQLADLLPTANIFVTLCLTEIALPLGCSSCVKSIKAETSSADSERQRTV 543
A ++ + P GTFC + E T ++ F +NN +L+VQF+LLL +FV+P+++ QSGGAVYRR+V+RNV CT GI +Y +TT++VV+ L + S+K+ Q+ D+ AN TLCLTEI LPLG SC+K+ T+ A+S + + V
Sbjct: 25 ALMLGTRFPGGTDPAGTFCYNGIVPTGASELTTSNNAQSFGINNVLLVVQFILLLGLFVQPMLVRVEGAQSGGAVYRRVVLRNVFCTAGIVISYAITTLVVVIALLRESVESNKSAQIRDVALAANSLGTLCLTEITLPLGFRSCMKACSTGTAMANSTKTQAV 188
BLAST of mRNA_E_fasciculatus_S2_contig8060.16222.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY97_9PHAE) HSP 1 Score: 109 bits (273), Expect = 2.780e-25 Identity = 61/135 (45.19%), Postives = 86/135 (63.70%), Query Frame = 1
Query: 106 TFCL-ALDLKNDEDVTFSDTLGFVVNNAILIVQFVLLLAMFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIGITFTYTVTTVIVVLGFLTTAPGSDKAGQLADLLPTANIFVTLCLTEIALPLGCSSCVKSIKAE 507
TFC+ + +D D + LG+ N L++QFVLLL +FV+PL++ +QSG A+YR +V++N+ CTI + Y VTTV+V+ + + S+ A AD+ P N FVTLCLTEIALPLG SSC K+ E
Sbjct: 192 TFCVNGYHMDDDTDEVNDNVLGYGSNMGSLVIQFVLLLILFVRPLLVRLEGSQSGEAMYRMVVIKNITCTIAVVTAYAVTTVVVIAALIRQSNDSNTASLFADITPLVNQFVTLCLTEIALPLGFSSCWKACSLE 326
BLAST of mRNA_E_fasciculatus_S2_contig8060.16222.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H2_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 2.060e-19 Identity = 55/115 (47.83%), Postives = 70/115 (60.87%), Query Frame = 1
Query: 163 LGFVVNN-AILIVQFVLLLAMFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIGITFTYTVTTVIVVLGFLTTAPGSDKAGQLADLLPTANIFVTLCLTEIALPLGCSSCVKSIKA 504
+GF+ NN +L++Q LLLAMFVK +MI QG TQSG AVYRRLV R++ CT+ + YT TT +VVL L PG+++ IALP G SSC+KSIKA
Sbjct: 1 MGFMTNNNMMLVIQLTLLLAMFVKLIMISQGSTQSGRAVYRRLVARSIVCTVAVVLGYTTTTAVVVLAVLAAFPGNNQ---------------------IALPFGFSSCLKSIKA 94
BLAST of mRNA_E_fasciculatus_S2_contig8060.16222.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN54_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 3.510e-18 Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 1
Query: 100 EGTFCLALDLKNDEDVTFSDTLGFVVNNAILIVQFVLLLAMFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIGITFTYTVTT 345
EGT C + + D GF NN +L VQ+VLLLAMF+KP+++ QG+TQSGGAVYRR+V+RN+ CTIGI Y +TT
Sbjct: 114 EGTACFNSYREETDTAEVGDVAGFASNNVLLTVQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTIGIACAYVITT 195
BLAST of mRNA_E_fasciculatus_S2_contig8060.16222.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG97_ECTSI) HSP 1 Score: 82.0 bits (201), Expect = 2.670e-15 Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = 1
Query: 100 EGTFCLALDLKNDEDVTFS-----DTLGFVVNNAILIVQFVLLLAMFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIGITFTYTVTTVIVVLGFLTTAP 381
EGTFC K DEDV + + G+ V NA+L+VQ+VLLL +FV+PLM+ QSGGAVYR +V+RN++CT+ + +Y +TT++ V+ L P
Sbjct: 203 EGTFC-ENGFKRDEDVNYEREASDNAYGYAVTNAMLLVQYVLLLILFVRPLMVRLEGAQSGGAVYRSVVIRNISCTVAVVVSYIITTIVTVIALLRQHP 300 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8060.16222.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8060.16222.1 >prot_E_fasciculatus_S2_contig8060.16222.1 ID=prot_E_fasciculatus_S2_contig8060.16222.1|Name=mRNA_E_fasciculatus_S2_contig8060.16222.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=181bp MLIKAYDSLYDLALCRTSGAFLMAAQISSVPSPEGTFCLALDLKNDEDVTback to top mRNA from alignment at E_fasciculatus_S2_contig8060:1393..4229+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8060.16222.1 ID=mRNA_E_fasciculatus_S2_contig8060.16222.1|Name=mRNA_E_fasciculatus_S2_contig8060.16222.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2837bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8060:1393..4229+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8060:1393..4229+ >mRNA_E_fasciculatus_S2_contig8060.16222.1 ID=mRNA_E_fasciculatus_S2_contig8060.16222.1|Name=mRNA_E_fasciculatus_S2_contig8060.16222.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=543bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8060:1393..4229+ (Ectocarpus fasciculatus EfasUO2)back to top |