mRNA_E_fasciculatus_S2_contig8058.16218.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8058.16218.1
Unique NamemRNA_E_fasciculatus_S2_contig8058.16218.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8058.16218.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK79_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 4.030e-47
Identity = 246/288 (85.42%), Postives = 252/288 (87.50%), Query Frame = 1 
Query:    1 QEAQFGIRERPDLTLVEECMDLFRQAAELYSAADDPRHEEVLAHMHRFLQREDVLSALGGDGSPDGGASSSSDSTPVEGAAPVHGAPAAEKGSGGGDXXXXXXXXXSGADGSRAVADLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSGGAXGRGGRASPXXXXXXXXXGKTAGLSGRSTTGRYGSGSRKDPAASNASPSAKKSGSSASPSTDGGA 864
            +EAQFG+RERPDLTLVEECMDLFRQAAELYSAADDPRHEEVLAHMHRFLQREDVLSALGGDGSPDGG +SS DSTPVEG APV GAPAAE+ SG        XX  SGADGSRAVADL G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      X        XXXXXXXXX KTAGLSGRSTTGRYGS SRKD AASNASP+AKKSGSSASP  +GGA
Sbjct:  381 KEAQFGVRERPDLTLVEECMDLFRQAAELYSAADDPRHEEVLAHMHRFLQREDVLSALGGDGSPDGGGASS-DSTPVEGDAPVGGAPAAEEDSG----VDGGXXEGSGADGSRAVADLTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXKTAGLSGRSTTGRYGSASRKDSAASNASPNAKKSGSSASPPAEGGA 660
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BLAST of mRNA_E_fasciculatus_S2_contig8058.16218.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXF8_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 3.490e-46
Identity = 212/288 (73.61%), Postives = 216/288 (75.00%), Query Frame = 1 
Query:    1 QEAQFGIRERPDLTLVEECMDLFRQAAELYSAADDPRHEEVLAHMHRFLQREDVLSALGGDGSPDGGASSSSDSTPVEGAAPVHGAPAAEKGSGGGDXXXXXXXXXSGADGSRAVADLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSGGAXGRGGRASPXXXXXXXXXGKTAGLSGRSTTGRYGSGSRKDPAASNASPSAKKSGSSASPSTDGGA 864
            +EAQFG RERPDLTLVEECMDLFRQAAELYSAADDPRHEEVLAHMHRFLQREDVLSALGGDGS DGG +SS DS PVEGAAPV GA AA + SGG           SGADGSRAVADL          XXXX                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         GG             GKTAGLSGRSTT RYGSGSRKD AASNASP AKKSGSSASPST+GGA
Sbjct:  409 KEAQFGARERPDLTLVEECMDLFRQAAELYSAADDPRHEEVLAHMHRFLQREDVLSALGGDGSRDGGGASS-DSAPVEGAAPVGGASAAVEDSGG----DGGSPDGSGADGSRAVADLTEGSDDQTSAXXXXTQEAAAVAEGDGSTPKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASGG------------VGKTAGLSGRSTTRRYGSGSRKDSAASNASPDAKKSGSSASPSTEGGA 679
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BLAST of mRNA_E_fasciculatus_S2_contig8058.16218.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2DZK0_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.140e-7
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:   31 PDLTLVEECMDLFRQAAELYSAADDPRHEEVLAHMHRFLQREDVLSALGG 180
            P +  V+E MDL+RQAAE +  A DPRHEEV++HMH+FL +  V+S L G
Sbjct:  476 PTVEKVDEIMDLYRQAAEKFEVAGDPRHEEVMSHMHKFLAKPLVMSILDG 525
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BLAST of mRNA_E_fasciculatus_S2_contig8058.16218.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LQS3_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.280e-7
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 QEAQFGIRERPDLTLVEECMDLFRQAAELYSAADDPRHEEVLAHMHRFLQREDVLSALGG 180
            QE +  + ++P +  V E MDL+RQAAE + +A DPRHEEV+AHM RFL ++   S L G
Sbjct:  497 QEKEKELLDQPTVDRVNEIMDLYRQAAEKFESAGDPRHEEVMAHMKRFLNQKFTTSILDG 556
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BLAST of mRNA_E_fasciculatus_S2_contig8058.16218.1 vs.
Match: Hypothetical (protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CA13_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.590e-7
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:    1 QEAQFGIRERPDLTLVEECMDLFRQAAELYSAADDPRHEEVLAHMHRFLQREDVLSALGG 180
            Q  +  +   P   LVEE MDL+RQAAE +  A D RHEEV+ HMH+FL +  ++S L G
Sbjct:  198 QRKEKSLEHMPSPALVEEIMDLYRQAAEKFETAGDVRHEEVMGHMHKFLAKPLIVSILDG 257
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BLAST of mRNA_E_fasciculatus_S2_contig8058.16218.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZWF4_TRICV)

HSP 1 Score: 56.2 bits (134), Expect = 1.230e-6
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   28 RPDLTLVEECMDLFRQAAELYSAADDPRHEEVLAHMHRFLQREDVLSALGG 180
            +P +  VE+ M+L+R AAE  + A+DPRH+EV+ HMH+FL R  V S L G
Sbjct:   36 KPTMKKVEDIMELYRSAAEELAQAEDPRHKEVMEHMHKFLTRPLVASLLDG 86
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BLAST of mRNA_E_fasciculatus_S2_contig8058.16218.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9CL72_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.620e-6
Identity = 28/60 (46.67%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:    1 QEAQFGIRERPDLTLVEECMDLFRQAAELYSAADDPRHEEVLAHMHRFLQREDVLSALGG 180
            Q  +  +   P +  V+  MDL+RQAAE +  A DPRHEEV+ HMH+FL +  V+S L G
Sbjct:  440 QTKEKALANSPSVEKVDNIMDLYRQAAEKFEVAGDPRHEEVMTHMHKFLAKPLVISILDG 499
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BLAST of mRNA_E_fasciculatus_S2_contig8058.16218.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WHH8_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.690e-5
Identity = 27/60 (45.00%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:    1 QEAQFGIRERPDLTLVEECMDLFRQAAELYSAADDPRHEEVLAHMHRFLQREDVLSALGG 180
            Q  +  +   P +  V E MDL+RQAAE +  A DPRHEEV+ HM +FL +    S L G
Sbjct:  192 QRRERALESNPTVAAVNEIMDLYRQAAEKFEQAGDPRHEEVMGHMRKFLAKPLTASILDG 251
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BLAST of mRNA_E_fasciculatus_S2_contig8058.16218.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BS43_THAPS)

HSP 1 Score: 57.0 bits (136), Expect = 1.760e-5
Identity = 28/60 (46.67%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:    1 QEAQFGIRERPDLTLVEECMDLFRQAAELYSAADDPRHEEVLAHMHRFLQREDVLSALGG 180
            Q+ +  + + P++  V E MDL+RQAAE +  A DPRH EV+AHM RFL +    S L G
Sbjct:  521 QQKEAELIDNPNVDRVNEIMDLYRQAAEKFEQAGDPRHTEVMAHMKRFLNQAFTTSILDG 580
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BLAST of mRNA_E_fasciculatus_S2_contig8058.16218.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R738_THAOC)

HSP 1 Score: 55.8 bits (133), Expect = 4.050e-5
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   25 ERPDLTLVEECMDLFRQAAELYSAADDPRHEEVLAHMHRFLQREDVLSALGG 180
            + P    V E MDL+RQAAE + +A DPRH EV++HM RFL ++   S L G
Sbjct:  462 DHPTTDRVNEIMDLYRQAAEKFESAGDPRHSEVMSHMQRFLSQQFTTSILDG 513
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8058.16218.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
Uncharacterized4.030e-4785.42protein (Fragment) n=1 Tax=Ectocarpus siliculosus ... [more]
Uncharacterized3.490e-4673.61protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical5.140e-756.00protein n=1 Tax=Helicotheca tamesis TaxID=374047 R... [more]
Hypothetical5.280e-750.00protein n=1 Tax=Skeletonema marinoi TaxID=267567 R... [more]
Hypothetical6.590e-748.33protein n=2 Tax=Proboscia inermis TaxID=420281 Rep... [more]
Hypothetical1.230e-650.98protein (Fragment) n=1 Tax=Trieres chinensis TaxID... [more]
Hypothetical1.620e-646.67protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical1.690e-545.00protein n=1 Tax=Pseudictyota dubia TaxID=2749911 R... [more]
Uncharacterized1.760e-546.67protein n=1 Tax=Thalassiosira pseudonana TaxID=351... [more]
Uncharacterized4.050e-550.00protein n=1 Tax=Thalassiosira oceanica TaxID=15974... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8058contigE_fasciculatus_S2_contig8058:5045..6817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score184.5
Seed ortholog evalue7e-44
Seed eggNOG ortholog2880.D8LK79
Model size864
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2CDVM@1,2SBA9@2759
Cds size864
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842466.8799644-CDS-E_fasciculatus_S2_contig8058:5044..57881696842466.8799644-CDS-E_fasciculatus_S2_contig8058:5044..5788Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8058 5045..5788 -
1696842466.893267-CDS-E_fasciculatus_S2_contig8058:6697..68171696842466.893267-CDS-E_fasciculatus_S2_contig8058:6697..6817Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8058 6698..6817 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8058.16218.1prot_E_fasciculatus_S2_contig8058.16218.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8058 5045..6817 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8058.16218.1

>prot_E_fasciculatus_S2_contig8058.16218.1 ID=prot_E_fasciculatus_S2_contig8058.16218.1|Name=mRNA_E_fasciculatus_S2_contig8058.16218.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=288bp
QEAQFGIRERPDLTLVEECMDLFRQAAELYSAADDPRHEEVLAHMHRFLQ
REDVLSALGGDGSPDGGASSSSDSTPVEGAAPVHGAPAAEKGSGGGDVGG
GGSPEGSGADGSRAVADLVGGGGGDDQASAATTGSTQEEEAAAEAEGAGS
TPTKTGTAAAAAAAARRTAGTPVSAAAAAKRTPSSRTSPSTATSAAGRGG
GARRTSSGGGGGRTEAAGGSGGAAGRGGRASPSSAASGGGAGKTAGLSGR
STTGRYGSGSRKDPAASNASPSAKKSGSSASPSTDGGA
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mRNA from alignment at E_fasciculatus_S2_contig8058:5045..6817-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8058.16218.1 ID=mRNA_E_fasciculatus_S2_contig8058.16218.1|Name=mRNA_E_fasciculatus_S2_contig8058.16218.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1773bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8058:5045..6817- (Ectocarpus fasciculatus EfasUO2)
CAGGAGGCCCAGTTCGGGATCAGAGAGCGACCCGACCTGACCCTCGTTGA
GGAATGCATGGACCTCTTCCGGCAGGCGGCCGAGCTCTACTCCGCCGCCG
ATGACCCGCGACACGAGGAGGTGTGTGTGCGTGTCTTTATCGTTTGTATC
GACCGCTCTACACCCGGCTGACCACTGAAAATACTTGTTTCAGTGCGGTT
GAAAACACAAAACACTTGTATTTTAATGCCATGAACTGGGACCCCCATGA
GGGTGTGTGTGTGTGTGTGAAGGGGGGGTGCCGCATAGTGTAGTGAGGAA
TTTAGTACGGTGTGTGTGCCAAGCGGGGCCCCGAAGTATGTATTCAGCAC
GGCGTGTGCATACGTGGCAAGAAGCAAAACCGTACGCTTGCGGGGACCCA
CCCCAAGAGGTTTTGACCGGTCCCGTGTCCCGTGTCAGAACTCCACACTT
TTCTTCCGGTGCGCACTTGCTTTATACTCTACTAAACGATCCCGCGGTGG
CTGGCTTGGCTGGCTTGGCTGGCTTGGCTGGCTTGAGTGGCTTGGCTGGC
TTGAGTGGCTTGGCTGGCTTGAGTGGCTTGACTGGCTTTCTCGGCTACAT
ACGTCGTCACGCGTACTGTGGGCAAGTATTTCGCGCGAGGACTTGCTGCT
GCTTCTTCTTTTGCTTAAATTTGTGTGTGTGCGTGTGTGTGTACATGTAG
ACATGTTGTGTGTGTGGCCGTGCCGCCCGGCGTGCTGCCTGCTGCCAAGG
TAGGTAAAAACCGCTGCTATGCGTGCATGGCATGCAGGGTACCACGACTC
GCCCCAGCGCGTTCACACCATCCGGAAAAACCCTTTGGCTTTGTGACAAA
ACAAAAGCCTCTCGTCCTCTGCCGGCCCACGGCGACGATAGACGCCTATT
TCGTCTCTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGCGCCCGA
TCTTGTCCGGTGACCGCGCACTCCTGTCTGCCGTGGCCCTTCCCTCTTCC
TTTTTCTTCGTCCCTCCTCCCTTGGACAGGTTCTAGCACACATGCACCGG
TTCCTCCAGCGAGAGGACGTCCTGAGCGCCCTGGGGGGGGACGGCAGCCC
GGACGGTGGTGCAAGTAGTAGTAGTGATAGTACCCCCGTCGAAGGTGCCG
CCCCAGTTCACGGAGCCCCCGCAGCGGAGAAAGGCAGCGGCGGTGGCGAT
GTTGGTGGTGGTGGTTCTCCTGAGGGTAGTGGCGCGGACGGCTCCCGAGC
TGTCGCCGATCTGGTTGGTGGCGGGGGCGGTGACGACCAGGCGTCCGCTG
CTACGACCGGCTCTACGCAAGAGGAAGAAGCCGCCGCCGAAGCAGAAGGT
GCCGGCAGCACGCCGACAAAGACGGGTACGGCGGCGGCGGCGGCGGCAGC
AGCTAGACGGACGGCGGGCACCCCGGTGTCCGCGGCGGCGGCTGCCAAGA
GGACCCCCAGCAGCAGAACGTCCCCCTCAACGGCGACGAGCGCGGCGGGG
AGAGGAGGAGGAGCTCGACGGACCAGCAGCGGAGGAGGAGGAGGACGAAC
AGAAGCAGCAGGAGGGAGCGGCGGCGCCGCCGGCAGAGGGGGAAGGGCCT
CCCCTTCTTCCGCCGCCTCGGGTGGTGGTGCTGGTAAGACGGCGGGGCTG
TCGGGGCGCTCTACGACGGGGCGTTATGGTTCGGGATCGAGGAAGGACCC
AGCGGCGAGCAACGCTAGCCCGAGCGCCAAGAAGAGCGGGTCCTCGGCAT
CGCCATCGACGGACGGGGGGGCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8058:5045..6817-

>mRNA_E_fasciculatus_S2_contig8058.16218.1 ID=mRNA_E_fasciculatus_S2_contig8058.16218.1|Name=mRNA_E_fasciculatus_S2_contig8058.16218.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=864bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8058:5045..6817- (Ectocarpus fasciculatus EfasUO2)
CAGGAGGCCCAGTTCGGGATCAGAGAGCGACCCGACCTGACCCTCGTTGA
GGAATGCATGGACCTCTTCCGGCAGGCGGCCGAGCTCTACTCCGCCGCCG
ATGACCCGCGACACGAGGAGGTTCTAGCACACATGCACCGGTTCCTCCAG
CGAGAGGACGTCCTGAGCGCCCTGGGGGGGGACGGCAGCCCGGACGGTGG
TGCAAGTAGTAGTAGTGATAGTACCCCCGTCGAAGGTGCCGCCCCAGTTC
ACGGAGCCCCCGCAGCGGAGAAAGGCAGCGGCGGTGGCGATGTTGGTGGT
GGTGGTTCTCCTGAGGGTAGTGGCGCGGACGGCTCCCGAGCTGTCGCCGA
TCTGGTTGGTGGCGGGGGCGGTGACGACCAGGCGTCCGCTGCTACGACCG
GCTCTACGCAAGAGGAAGAAGCCGCCGCCGAAGCAGAAGGTGCCGGCAGC
ACGCCGACAAAGACGGGTACGGCGGCGGCGGCGGCGGCAGCAGCTAGACG
GACGGCGGGCACCCCGGTGTCCGCGGCGGCGGCTGCCAAGAGGACCCCCA
GCAGCAGAACGTCCCCCTCAACGGCGACGAGCGCGGCGGGGAGAGGAGGA
GGAGCTCGACGGACCAGCAGCGGAGGAGGAGGAGGACGAACAGAAGCAGC
AGGAGGGAGCGGCGGCGCCGCCGGCAGAGGGGGAAGGGCCTCCCCTTCTT
CCGCCGCCTCGGGTGGTGGTGCTGGTAAGACGGCGGGGCTGTCGGGGCGC
TCTACGACGGGGCGTTATGGTTCGGGATCGAGGAAGGACCCAGCGGCGAG
CAACGCTAGCCCGAGCGCCAAGAAGAGCGGGTCCTCGGCATCGCCATCGA
CGGACGGGGGGGCC
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