mRNA_E_fasciculatus_S2_contig8032.16197.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8032.16197.1
Unique NamemRNA_E_fasciculatus_S2_contig8032.16197.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8032.16197.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C4_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 5.380e-7
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:  343 DGNADLTDERILANAVLQLSLADRAV-RTNSSPIG 444
            DGNADLTDERILANAVLQLSLADRAV RT+ +PIG
Sbjct: 1269 DGNADLTDERILANAVLQLSLADRAVVRTSGTPIG 1303
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BLAST of mRNA_E_fasciculatus_S2_contig8032.16197.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW7_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 6.670e-7
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:  343 DGNADLTDERILANAVLQLSLADRAV-RTNSSPIG 444
            DGNADLTDERILANAVLQLSLADRAV RT+  PIG
Sbjct:  580 DGNADLTDERILANAVLQLSLADRAVVRTSGGPIG 614
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8032.16197.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Protein5.380e-788.57kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
Hypothetical6.670e-788.57leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8032contigE_fasciculatus_S2_contig8032:2025..5476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size482
Hectar predicted targeting categoryother localisation
Exons6
Cds size270
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8032.16197.1prot_E_fasciculatus_S2_contig8032.16197.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8032 3174..5441 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842464.9933379-UTR-E_fasciculatus_S2_contig8032:2024..20971696842464.9933379-UTR-E_fasciculatus_S2_contig8032:2024..2097Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8032 2025..2097 +
1696842465.0053692-UTR-E_fasciculatus_S2_contig8032:2728..28001696842465.0053692-UTR-E_fasciculatus_S2_contig8032:2728..2800Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8032 2729..2800 +
1696842465.0168808-UTR-E_fasciculatus_S2_contig8032:3141..31731696842465.0168808-UTR-E_fasciculatus_S2_contig8032:3141..3173Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8032 3142..3173 +
1696842465.079284-UTR-E_fasciculatus_S2_contig8032:5441..54761696842465.079284-UTR-E_fasciculatus_S2_contig8032:5441..5476Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8032 5442..5476 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842465.0274012-CDS-E_fasciculatus_S2_contig8032:3173..32131696842465.0274012-CDS-E_fasciculatus_S2_contig8032:3173..3213Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8032 3174..3213 +
1696842465.0452507-CDS-E_fasciculatus_S2_contig8032:3669..37411696842465.0452507-CDS-E_fasciculatus_S2_contig8032:3669..3741Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8032 3670..3741 +
1696842465.0583432-CDS-E_fasciculatus_S2_contig8032:4601..46761696842465.0583432-CDS-E_fasciculatus_S2_contig8032:4601..4676Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8032 4602..4676 +
1696842465.0684922-CDS-E_fasciculatus_S2_contig8032:5358..54411696842465.0684922-CDS-E_fasciculatus_S2_contig8032:5358..5441Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8032 5359..5441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8032.16197.1

>prot_E_fasciculatus_S2_contig8032.16197.1 ID=prot_E_fasciculatus_S2_contig8032.16197.1|Name=mRNA_E_fasciculatus_S2_contig8032.16197.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=90bp
MLTELTIGRNRLTGGIPEELGNLDRLIQLDLSSNYLEGDIPLTLGNLTSL
EYLELDGNADLTDERILANAVLQLSLADRAVRTNSSPIG*
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mRNA from alignment at E_fasciculatus_S2_contig8032:2025..5476+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8032.16197.1 ID=mRNA_E_fasciculatus_S2_contig8032.16197.1|Name=mRNA_E_fasciculatus_S2_contig8032.16197.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3452bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8032:2025..5476+ (Ectocarpus fasciculatus EfasUO2)
GGCTCTATTCCGAAGGGTATTGGGAGGCTCACGCACCTGCGGCTTGTCTT
CCTGAACGACAACCACCTCACAGGTGAGCAGGAGGGGGCCACAACAACAA
CGGGAATATCTCGTGTGTGTCCCCCCTCGCGGGCGCGATTCCGCGCATAC
CGTTTCTATGTCGTCGACGCGGCACTGCTGCGCTGCTTTCGTAAGTCTTG
GCAACGAAGCTCCAGCCAGCGCTGCTCGGCGGTTGGCAATCTACCTCATG
GCCAAGCGCCAAGCGGTGGCGCGTAGATGAACTACCAACGTAAATATCGC
CAATTTCGCGCCTCCATTGGCCGACTTTCAGAGCTTCAGAGCCTGGTTGC
TCCACAACCAAGAGGTCGCGAAAGCCGGCCGATCCATGCATCTAGCCGAC
CGATCGGTGGACCTGTCTCAAGGAAAGCTATCGTTTGAAAAATATGCTTC
CAAAAACCACCCTCTTCGGAACTGGTGCCACCCCCTCCCGATTGTGCAGC
ATCTGGGCTTTGAAAATTTGTCCAAGGGGGGTGCGTTAGTTGTCAGCTTT
ACGGCATTTCTTTTGCTGGTGCTGGTGCTGGTGCTGGTGCCGTAGCACAC
TTCCATTCCCCCATCACACACCAAAACACAAATAAATCCCTGTCATGCTG
CGTACCACCCCCCCCCCGGTTCGGTTGTGTGGCCATCCCTGACACTGGAA
GCAGGGGTAATTCCTCCGGACCTGGGGAAGCTCGAGGGGCTGCAGTGTCT
CGACCTTAGCGGCAACAATCTCGAAGGTATACTGTCTGCACTGGTTGACG
CTGTTTTCGATGTTGCCCCTGCGACGAGTTTACCCTTTGCCGCCACCGCC
GCCGTCCTTGGTGGTGTGGCCTGGACATGACATGAGTGCCGTGGTCTGTG
GTGTCCTGGGACAAGCCCCCTCCTGTTCATGTTTGCTTTCTGTTGTTGCT
GTTATTAGTACAGTATTCGGTGTTGTGGTTGGTTAAATTGGCAACCTGTA
ACCTTCTGTGTGTGCCAGATGATTCCAACTCGGGAACGAATGCTCCATTG
CTTGGTTGCGTGTGTGACTCAATCTCTCCTGTCAAAATACGCGCGACCTC
TCGCAACGACACGACAGGCCCGATACCGTCGGAGCTCGGACGCCTCCGGA
TGCTTACGGAGCTCACGATCGGACGGAACCGCCTCACGGGTAAGAAGGCC
GTCGAATCCGCATCTTTTGTGCTAGCCGGAAGCTGCGGGGGGGAAACCGT
GCACTCCTCGTGACAGCGGGAGGTGGTAGAGAAAGATTGCTCTCCTGTCG
TGATAGCGGGGAAGTTGAGGAGGACAACCCTCCCCAGTCGTGACAGCTGG
AAACTCCGGAGAAAAATATTTCAACGGTTGTGGGTTTGTCATTGCAATGT
CGACACTGCTATTGTCCGCGGTCCTGCCAACAGGGGCGAACAGGGCCTAC
ATGAGTCTACTGTTTCAAATTTTTAACCCATATTTTACTGGTGTTTCTTT
CGTAACCGAACGGCGTGTTGTATGCATTGAGCGTGTTGGTAACCTGGTAC
TACGCACTGCGTCCGCCTCCCGTGCGACGCACCACTCGCGACTATTGCAA
CCACAACAATAAACGCAACAATCACGTCTGATCCGCTTGCGATAGGCGGC
ATCCCGGAAGAACTCGGCAACCTCGACAGACTGATTCAGCTGGATCTCAG
CAGCAACTACCTCGAAGGTATGGTTTTGTTGTTCCTGCTGTTGCTATTGG
ATGCCGGTTTTGCTGGTATTAAGTTGCTCTGGCGCTTCACTGGCGTGAGT
TAGGGAAAATCAACCGTTACACGTACGTGTTTCGACGCGAGGATAATATT
TTTTCATCACGTCTTCGGAGAACGTTCGAAGCCGAAACGTGAAGGTCAGG
CAACGCGGCGTTACCTTCCATGACCAATGTCCGCCACCTCCTTCGTATTG
TAGGCCTCATTGCACCCTTCCGCGCACCATGCCCAACAAGTATTCTGTAT
CGTGCTTCGGATTGGAATCCCATGCGAGGGAGGGCGAATTACATACGTGT
GCGCTATCGGTTTTGAAAGTTCGATTCTCCACAACCAAGACGCATCCAAT
GGCGAAAATGGCGGTGTTGGAAAAAAGATATCGTCGAGATACTGTTCCTT
TCCTTCCAAGTGTCAGTCCGGTTTCGCACTATCTTGGTTGTGCAATCGAC
CTTCAAGATCGACCTCACATCTGTGGATTCGCCCGCACTTCCACAGTATA
CTCCCAAGCAGCGCAAGCTCGGGTGTGCAATTATTTTTGGTGTTGTTGTT
GCCGCATCTTGTTCTCGTACTTGATGCCGTCGTTGCCGTTCTTCATAAGT
ATCAAGGTGGTGGTGAACTCTAGCGTGTATCTCTTCCGGTGTAGGTGTCC
ATTTCCGACACCAACGCCGCTTCACCCCTCGCCAAGCAGACGACACACAC
CCGTCCACGATGTCCAAGGTTGTCGTGAGATTCAACTAGGAACACCATAG
CAACGCAGCAGCGCTCACCACTGCTGTTTTTCTCCCCCACAATCGCCGCT
GCCACATGGTCCCCCGCGTCGAGACAGGAGACATCCCTCTGACTCTTGGA
AACCTGACGTCATTGGAGTACCTCGAGTTGGACGGGAACGCCGACCTCAC
AGGTATAGCGGTGCTGCTGGTTGCTGCTGCTGCTGCTGCTGCTGCCGACC
CGGGGTTTGATGTGGTACTGCTTCCCATAGAGTATACTTCACCATTACGT
TCGTGCACGATATGTTGAGGTTCACTTGGCAATGGTTTTTCAGACAAGAG
ATAGGCAGGGCCTCCACGACCCCACCGCTCACAAGGCGCACGGGAGAATG
CGATCATTTTGCTCTCTTTACGAAACCACTATTTAGCAACTCTACGCAAC
GCACGAGGTGTGAGAACGTTTCTGGGCCAGAACAGGTGTGATAGCGAAGA
TGGTAGAACAGGTGTGATAGCGAAGATGGTAGTGCTCCAGCATGATTAAG
TCGGGGTAATTGGAAAGGGTTTGGCCGAGGGAGAGATTCGGCAGCAAGCG
GGCGCATCACACGTCGCAAAATGCTCGTGAAAATCGCTCTTTCGGTTGTT
GCTGGCCGACTTTTTCTCAGGCAAGATGCATCTCGTCGAAGGCACGACTA
CGCTCGCATGCATGTTGATCGCCTCCCCTCGTTGCTCCTCCCCGAATCGA
TACACCTGAACCCCGAGACCCCTCCGCTCTCCACGTCTCCTGTTAACAAT
ACCATTGCCCCTCTCCTCCTTTGCCTCCGCCGTGTCCTAATCGAAATATC
ACCCGTCCCGGGACACACCCGTGCGGCAACCCAGACGAGCGCATCCTAGC
GAATGCGGTCCTGCAGCTGTCGCTCGCCGACAGAGCCGTGCGGACGAATA
GCAGCCCGATCGGGTGAAGAACCAGGGCAATCCCGAACCGATCTCACACA
GA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8032:2025..5476+

>mRNA_E_fasciculatus_S2_contig8032.16197.1 ID=mRNA_E_fasciculatus_S2_contig8032.16197.1|Name=mRNA_E_fasciculatus_S2_contig8032.16197.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=270bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8032:2025..5476+ (Ectocarpus fasciculatus EfasUO2)
ATGCTTACGGAGCTCACGATCGGACGGAACCGCCTCACGGGCGGCATCCC
GGAAGAACTCGGCAACCTCGACAGACTGATTCAGCTGGATCTCAGCAGCA
ACTACCTCGAAGGAGACATCCCTCTGACTCTTGGAAACCTGACGTCATTG
GAGTACCTCGAGTTGGACGGGAACGCCGACCTCACAGACGAGCGCATCCT
AGCGAATGCGGTCCTGCAGCTGTCGCTCGCCGACAGAGCCGTGCGGACGA
ATAGCAGCCCGATCGGGTGA
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