mRNA_E_fasciculatus_S2_contig803.16195.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig803.16195.1
Unique NamemRNA_E_fasciculatus_S2_contig803.16195.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 4.810e-53
Identity = 98/102 (96.08%), Postives = 99/102 (97.06%), Query Frame = 1
Query:  241 GASELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASHKGLMKGITDNECVAAMIGDVKVAVAGLAQATQVR 546
            G SELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPAS KGLMKGITDNECVAAMIGDVKVAVAGLAQATQ +
Sbjct: 1248 GVSELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASQKGLMKGITDNECVAAMIGDVKVAVAGLAQATQAK 1349          
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Match: DUF814-domain-containing (protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FRS9_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.780e-27
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 1
Query:  238 DGASELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASHKGLMKGITDNECVAAMIGDVKVAVAGLAQATQ 540
            D  +ELD+LTGKP  ED++LFAVPVC PY SL  Y Y+VKLTPG  KRGKASKQ I++F R    P   +GL+K + DNE V A+ GDVK++ AG ++A Q
Sbjct:  906 DDTAELDKLTGKPLGEDLILFAVPVCAPYQSLSKYAYRVKLTPGNMKRGKASKQCIDMFLRESAVPEHCRGLIKNVADNEWVQAICGDVKISAAGASKAIQ 1006          
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Match: Nuclear (export mediator factor nemf-like n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RK70_9CHLO)

HSP 1 Score: 111 bits (277), Expect = 1.110e-26
Identity = 50/96 (52.08%), Postives = 74/96 (77.08%), Query Frame = 1
Query:  247 SELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASHKGLMKGITDNECVAAMIGDVKVAVAGLAQA 534
            +ELD LTG PR +D+LLFA+PVC PY +L  YKY+VKLTPG+QK+GKA+K+A+++F R  +  +  K L++ +TD E V+ M+G V++++ GLA A
Sbjct:  144 TELDSLTGIPRXDDLLLFAIPVCAPYAALNGYKYRVKLTPGRQKKGKAAKEALDIFGRVNEATSREKELIRAVTDTEAVSGMVGPVQISMPGLAAA 239          
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M4N2_CHABU)

HSP 1 Score: 115 bits (289), Expect = 1.830e-26
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 1
Query:  247 SELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASHKGLMKGITDNECVAAMIGDVKVAVAGLAQATQ 540
            +ELD LTG PR++DVLL+AVPVCGPY +L++YKY+VKLTPG  K+GKA++ A+EVF+R+ D     K LMK + + E VA MIG+VKVA  GL +  Q
Sbjct: 1276 TELDSLTGVPREDDVLLYAVPVCGPYSALQNYKYRVKLTPGTVKKGKAARTAVEVFARTVDVSPRQKDLMKAVPETELVAVMIGNVKVAAPGLMKIRQ 1373          
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HPI5_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.540e-26
Identity = 50/93 (53.76%), Postives = 70/93 (75.27%), Query Frame = 1
Query:  247 SELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASHKGLMKGITDNECVAAMIGDVKVAVAGL 525
            +EL++LTG P   DV++F VPVCGPY SL+ YKYKVKLTPG  K+G+A KQA++VF+R ++     + L+K ++DNE V  +IG+VKV+  GL
Sbjct:   23 TELNKLTGLPLPSDVIMFCVPVCGPYQSLQRYKYKVKLTPGSTKKGRAGKQALDVFTRMKECSPRERDLIKFVSDNELVQTIIGEVKVSTPGL 115          
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Match: nuclear (export mediator factor NEMF-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CF237)

HSP 1 Score: 104 bits (260), Expect = 1.940e-25
Identity = 51/98 (52.04%), Postives = 68/98 (69.39%), Query Frame = 1
Query:  247 SELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASHKGLMKGITDNECVAAMIGDVKVAVAGLAQATQ 540
            +++D LTG P   D+LL+AVPVCGPY +L+ YKY+VK+ PG  K+GKA+K A+ +FS   +     K LMK  TD E VAA+IG+VK+  AGL Q  Q
Sbjct:   23 NDMDYLTGNPLSSDILLYAVPVCGPYSALQSYKYRVKIIPGSAKKGKAAKTAMNLFSHMSEATNREKELMKACTDPELVAAIIGNVKITAAGLTQLKQ 120          
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Match: Nuclear (export mediator factor NEMF (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XG72_9CHLO)

HSP 1 Score: 110 bits (274), Expect = 4.510e-25
Identity = 52/101 (51.49%), Postives = 73/101 (72.28%), Query Frame = 1
Query:  238 DGASELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASHKGLMKGITDNECVAAMIGDVKVAVAGLAQATQ 540
            D  ++LD LTG PR +DVLLFAVPVC PY +L+ YKYK+KLTPG Q++GKA++QA+E+ SR  DTP   K  +K + D + + A +G VK+++ GL +  Q
Sbjct:  302 DRLTQLDSLTGVPRPDDVLLFAVPVCAPYSALQGYKYKLKLTPGTQRKGKAARQAVELLSRQPDTPVREKDFIKAVPDMDMINAFVGTVKLSMPGLVKIKQ 402          
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Match: Nuclear (export mediator factor Nemf n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314ZFJ4_PRUYE)

HSP 1 Score: 107 bits (267), Expect = 4.680e-24
Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 1
Query:  247 SELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASHKGLMKGITDNECVAAMIGDVKVAVAGLAQATQVRFSIISRSASAG 579
            +++D LTG P   D+LL+AVPVCGPY S++ YKY+VK+TPG  KRGKA+K A+ +FS   +     K LMK  TD E VAA+IG+VK+  AGL Q  Q +  +   ++ AG
Sbjct:  305 NDVDYLTGNPLPSDILLYAVPVCGPYSSVQSYKYRVKITPGSVKRGKAAKTAMNLFSHMTEATVREKELMKACTDPELVAAIIGNVKITSAGLTQLKQKQKKVKKSNSKAG 415          
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Match: CCHC-type (domain-containing protein n=4 Tax=Punica granatum TaxID=22663 RepID=A0A218XUR9_PUNGR)

HSP 1 Score: 107 bits (268), Expect = 1.160e-23
Identity = 53/98 (54.08%), Postives = 72/98 (73.47%), Query Frame = 1
Query:  247 SELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASHKGLMKGITDNECVAAMIGDVKVAVAGLAQATQ 540
            +++D LTG P   D+LL+AVPVCGPY +L+ YKY+VK+TPG  K+GKA+K A+ +FS   +  +  K LMK  TD E VAA+IG+VKV+ AGL+Q  Q
Sbjct: 1026 NDVDYLTGNPLPSDILLYAVPVCGPYNALQSYKYRVKITPGTAKKGKAAKMAMNLFSHMPEATSREKELMKACTDPELVAAIIGNVKVSAAGLSQLKQ 1123          
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AHC6_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.170e-23
Identity = 53/97 (54.64%), Postives = 74/97 (76.29%), Query Frame = 1
Query:  250 ELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASHKGLMKGITDNECVAAMIGDVKVAVAGLAQATQ 540
            +L+RLTG P  +DVLLF +PVC PY SL  YK++VKLTPG QK+GKA KQ+++VF RS++  +  + L++ ++DNE V ++IGDVKV+  GL QA Q
Sbjct: 1110 DLNRLTGVPHVDDVLLFCIPVCAPYQSLNGYKFRVKLTPGTQKKGKAGKQSMDVFQRSKECTSRERDLIRMVSDNELVHSIIGDVKVSTPGL-QAAQ 1205          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig803.16195.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized4.810e-5396.08protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2... [more]
DUF814-domain-containing3.780e-2757.43protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 ... [more]
Nuclear1.110e-2652.08export mediator factor nemf-like n=1 Tax=Tetraselm... [more]
CCHC-type1.830e-2658.16domain-containing protein n=1 Tax=Chara braunii Ta... [more]
Hypothetical3.540e-2653.76protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
nuclear1.940e-2552.04export mediator factor NEMF-like n=1 Tax=Carica pa... [more]
Nuclear4.510e-2551.49export mediator factor NEMF (Fragment) n=1 Tax=Tre... [more]
Nuclear4.680e-2449.55export mediator factor Nemf n=1 Tax=Prunus yedoens... [more]
CCHC-type1.160e-2354.08domain-containing protein n=4 Tax=Punica granatum ... [more]
Hypothetical1.170e-2354.64protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig803contigE_fasciculatus_S2_contig803:44..1377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score193.4
Seed ortholog evalue1e-46
Seed eggNOG ortholog2880.D8LHP2
Model size582
KEGG koko:K10589
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.actin binding
EggNOG OGsCOG1293@1,KOG2030@2759
EC2.3.2.26
Cds size582
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842464.8871815-CDS-E_fasciculatus_S2_contig803:43..3941696842464.8871815-CDS-E_fasciculatus_S2_contig803:43..394Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig803 44..394 +
1696842464.8977551-CDS-E_fasciculatus_S2_contig803:1146..13771696842464.8977551-CDS-E_fasciculatus_S2_contig803:1146..1377Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig803 1147..1377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig803.16195.1prot_E_fasciculatus_S2_contig803.16195.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig803 44..1377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig803.16195.1

>prot_E_fasciculatus_S2_contig803.16195.1 ID=prot_E_fasciculatus_S2_contig803.16195.1|Name=mRNA_E_fasciculatus_S2_contig803.16195.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=194bp
AGGGIGSDGDKADSRSGEKAGEHGGDGEQRDASGLDAQEEEEPLSRRAQK
KREEEEVRKLLEEEGAGGEDFDGGGGGGGDGASELDRLTGKPRDEDVLLF
AVPVCGPYMSLRDYKYKVKLTPGKQKRGKASKQAIEVFSRSRDTPASHKG
LMKGITDNECVAAMIGDVKVAVAGLAQATQVRFSIISRSASAGA
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mRNA from alignment at E_fasciculatus_S2_contig803:44..1377+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig803.16195.1 ID=mRNA_E_fasciculatus_S2_contig803.16195.1|Name=mRNA_E_fasciculatus_S2_contig803.16195.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1334bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig803:44..1377+ (Ectocarpus fasciculatus EfasUO2)
GCTGGAGGTGGCATAGGTAGCGACGGCGACAAGGCAGACAGCCGTAGCGG CGAGAAAGCGGGGGAACACGGGGGAGACGGGGAGCAGCGGGACGCGTCTG GACTGGACGCTCAGGAAGAAGAGGAGCCCCTCAGTCGCCGAGCGCAGAAA AAGCGAGAGGAGGAGGAGGTCCGGAAGCTCCTGGAAGAGGAAGGGGCCGG CGGCGAAGACTTCGACGGGGGCGGCGGCGGCGGTGGCGATGGCGCGAGCG AGCTCGACAGGCTCACCGGGAAGCCTCGGGACGAGGACGTCCTGCTGTTC GCCGTCCCCGTCTGTGGGCCGTACATGAGCTTGCGCGACTACAAGTACAA GGTGCGGGAGAGGCGTCGGAGATTTTTCGGCTTTGGAGGAATACTCTGAC TTGACTGGGAGTGTGCCTATCTCCAAGAAGTAGTTCGGCACATTGTCGTA ACGTTGCGGGTTATAGTGGTTCCCCGAACGGGTGATATTAACCTCAGGCA GGGGGGATTTGGAGGCGTGTGGCGCGCAGAGAGGTGTATTGCGGAGTACG GGAGAAGGTCAGCATAAATGACAACAGACTGTTTTACGGGCGTGTGGGTA GGCGCCCTGATGACGATGGCGTCGCCTGTAGGTTTGCAGCCGAGTACGTG CGCGCCCTTTGAGGTTGGTGGCGTTGTGTTGCGTTGTCCAACACATGCCA CTATCGTTGTGTTGGTTGGTCTTGAGGTACGAGGGAGAACGCTAAATAGT GCATTCATGTAGTGAAACTCGGTCTATTCATTTTTTTTTCTTGTTGTCCT TCTCCGATAGTTCGTGTTTCTTAGGTCTTGTTCACTCGCATGATAGGTTT GTTGCTGAGGCGTCGTTCACTCATAGATAGGCCGTGTTTTCTTTGGTTTT ACTCGTGTTCGTTGAGGGTGGTTTCTTCCGAATATTTCATTCGTCGATCG CCGCCTCTGCCGCTTTGGTCATTACAGCAGTAGTAGATCCGTGGCTTACT TCCGTTTCAGTCACTCGTAGATCGTCTGTGACTGCGCGATGTTCGCATCG ACAACCTCTCTCTGCCGTTGTTTCACCCCCGGGATCGCGCATGCACTCCT CAGGTGAAGCTGACACCCGGCAAGCAGAAGCGCGGGAAGGCTTCCAAGCA GGCGATAGAGGTGTTTTCGAGATCCAGAGACACGCCGGCCTCCCACAAGG GGCTGATGAAGGGTATCACGGACAACGAGTGCGTCGCGGCCATGATTGGA GACGTCAAGGTGGCCGTGGCCGGGCTGGCCCAGGCAACCCAGGTGAGGTT TTCGATCATTTCGAGGAGTGCCTCGGCTGGTGCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig803:44..1377+

>mRNA_E_fasciculatus_S2_contig803.16195.1 ID=mRNA_E_fasciculatus_S2_contig803.16195.1|Name=mRNA_E_fasciculatus_S2_contig803.16195.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=582bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig803:44..1377+ (Ectocarpus fasciculatus EfasUO2)
GCTGGAGGTGGCATAGGTAGCGACGGCGACAAGGCAGACAGCCGTAGCGG
CGAGAAAGCGGGGGAACACGGGGGAGACGGGGAGCAGCGGGACGCGTCTG
GACTGGACGCTCAGGAAGAAGAGGAGCCCCTCAGTCGCCGAGCGCAGAAA
AAGCGAGAGGAGGAGGAGGTCCGGAAGCTCCTGGAAGAGGAAGGGGCCGG
CGGCGAAGACTTCGACGGGGGCGGCGGCGGCGGTGGCGATGGCGCGAGCG
AGCTCGACAGGCTCACCGGGAAGCCTCGGGACGAGGACGTCCTGCTGTTC
GCCGTCCCCGTCTGTGGGCCGTACATGAGCTTGCGCGACTACAAGTACAA
GGTGAAGCTGACACCCGGCAAGCAGAAGCGCGGGAAGGCTTCCAAGCAGG
CGATAGAGGTGTTTTCGAGATCCAGAGACACGCCGGCCTCCCACAAGGGG
CTGATGAAGGGTATCACGGACAACGAGTGCGTCGCGGCCATGATTGGAGA
CGTCAAGGTGGCCGTGGCCGGGCTGGCCCAGGCAACCCAGGTGAGGTTTT
CGATCATTTCGAGGAGTGCCTCGGCTGGTGCC
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