mRNA_E_fasciculatus_S2_contig8028.16193.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig8028.16193.1
Unique Name	mRNA_E_fasciculatus_S2_contig8028.16193.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Match: CYTOSOL_AP (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KET4_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.010e-32
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 3

Query:    3 LERMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHMEA 188
            LE+MAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHMEA
Sbjct:  450 LEKMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHMEA 511

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BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Match: CYTOSOL_AP (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR4_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.100e-32
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 3

Query:    3 LERMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHMEA 188
            LE+MAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHMEA
Sbjct:  464 LEKMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHMEA 525

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BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Match: CYTOSOL_AP (domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y0L7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.970e-23
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 3

Query:    3 LERMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHM 182
            LE +AV+ G+ SGDLVHPVVY PEF   EF+STVADMKNSV +R+NAQVSCAGQFIANH+
Sbjct:   83 LEGLAVKAGKISGDLVHPVVYAPEFHRAEFKSTVADMKNSVKNRANAQVSCAGQFIANHL 142

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BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6D4_HETAK)

HSP 1 Score: 94.4 bits (233), Expect = 5.050e-22
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 3

Query:    3 LERMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHM 182
            LER+  E GRSSGDL HP+ +CPEF+ +EF+S VADMKNSV DR+NAQVSCA QFI NH+
Sbjct:  171 LERLVTEVGRSSGDLCHPMPFCPEFYRDEFKSAVADMKNSVKDRANAQVSCAAQFIGNHL 230

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BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Match: CYTOSOL_AP (domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WWD2_GLOUD)

HSP 1 Score: 96.3 bits (238), Expect = 8.440e-22
Identity = 44/60 (73.33%), Postives = 53/60 (88.33%), Query Frame = 3

Query:    3 LERMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHM 182
            LER+AV+ G++SGDLVHPV Y PEF+  EF+STVADMKNSV +R+NAQVSCAGQFI NH+
Sbjct:  436 LERLAVKAGKASGDLVHPVPYAPEFYRAEFKSTVADMKNSVKNRTNAQVSCAGQFIGNHL 495

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BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Match: Metalloprotease (family M17, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C3Z8_PYTIN)

HSP 1 Score: 96.3 bits (238), Expect = 8.510e-22
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 3

Query:    3 LERMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHM 182
            LER+AV+ G+ SGDLVHPV Y PEFF  EF+STVADMKNSV +R+NAQVSCAGQFI NH+
Sbjct:  441 LERLAVKAGKRSGDLVHPVPYAPEFFRGEFKSTVADMKNSVKNRANAQVSCAGQFIGNHL 500

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Match: Metalloprotease (family M17, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVM1_PYTIN)

HSP 1 Score: 96.3 bits (238), Expect = 9.240e-22
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 3

Query:    3 LERMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHM 182
            LER+AV+ G+ SGDLVHPV Y PEFF  EF+STVADMKNSV +R+NAQVSCAGQFI NH+
Sbjct:  835 LERLAVKAGKRSGDLVHPVPYAPEFFRGEFKSTVADMKNSVKNRANAQVSCAGQFIGNHL 894

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BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Match: CYTOSOL_AP (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YFJ4_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.570e-21
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 3

Query:    3 LERMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHM 182
            LER+AV  G++SGDLVHP+ Y PEFF  EF+STVADMKNSV +R+NAQVSCAGQFI NH+
Sbjct:  432 LERLAVRAGKASGDLVHPMPYAPEFFRGEFKSTVADMKNSVKNRANAQVSCAGQFIGNHL 491

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Match: CYTOSOL_AP (domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZET8_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.110e-21
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 3

Query:    3 LERMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHM 182
            LE   V  G++SGD VHP+ Y PEFF +EF+S VADMKNSV  R+NAQVSCAGQFIANH+
Sbjct:    5 LEAWTVAAGKASGDFVHPLPYAPEFFRDEFKSKVADMKNSVKTRTNAQVSCAGQFIANHL 64

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Match: Aminopeptidase (n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U729_SALR5)

HSP 1 Score: 94.7 bits (234), Expect = 2.920e-21
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 3

Query:    3 LERMAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAGQFIANHM 182
            LE  AV  GR+SGDLVHP+++CPE FS+EF+S VADMKNSVA+RSNAQVSCA QFI NH+
Sbjct:  430 LEGEAVAAGRASGDLVHPLMWCPELFSDEFKSAVADMKNSVANRSNAQVSCAAQFIGNHL 489

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig8028.16193.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
CYTOSOL_AP	1.010e-32	98.39	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
CYTOSOL_AP	1.100e-32	98.39	domain-containing protein n=1 Tax=Ectocarpus silic...	[more]
CYTOSOL_AP	5.970e-23	75.00	domain-containing protein (Fragment) n=1 Tax=Notho...	[more]
Hypothetical	5.050e-22	70.00	protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re...	[more]
CYTOSOL_AP	8.440e-22	73.33	domain-containing protein n=1 Tax=Globisporangium ...	[more]
Metalloprotease	8.510e-22	75.00	family M17, putative n=1 Tax=Pythium insidiosum Ta...	[more]
Metalloprotease	9.240e-22	75.00	family M17, putative n=1 Tax=Pythium insidiosum Ta...	[more]
CYTOSOL_AP	1.570e-21	73.33	domain-containing protein n=1 Tax=Pythium brassicu...	[more]
CYTOSOL_AP	2.110e-21	68.33	domain-containing protein (Fragment) n=1 Tax=Aphan...	[more]
Aminopeptidase	2.920e-21	73.33	n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / B...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8028	contig	E_fasciculatus_S2_contig8028:5573..6425 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	124.0
Seed ortholog evalue	2.3e-26
Seed eggNOG ortholog	2880.D8LBR4
Preferred name	NPEPL1
Model size	188
KEGG ko	ko:K09611
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0008150,GO:0040008,GO:0040009,GO:0042802,GO:0046662,GO:0050789,GO:0050795,GO:0051239,GO:0065007,GO:2000241
Exons	2
EggNOG free text desc.	manganese ion binding
EggNOG OGs	COG0260@1,KOG2597@2759
Cds size	177
COG Functional cat.	E
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01000,ko01002

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842464.6617098-CDS-E_fasciculatus_S2_contig8028:5572..5666	1696842464.6617098-CDS-E_fasciculatus_S2_contig8028:5572..5666	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8028 5573..5666 -
1696842464.673619-CDS-E_fasciculatus_S2_contig8028:6331..6414	1696842464.673619-CDS-E_fasciculatus_S2_contig8028:6331..6414	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8028 6332..6414 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842464.6904628-UTR-E_fasciculatus_S2_contig8028:6414..6425	1696842464.6904628-UTR-E_fasciculatus_S2_contig8028:6414..6425	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig8028 6415..6425 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8028.16193.1	prot_E_fasciculatus_S2_contig8028.16193.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig8028 5573..6414 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig8028:5573..6425-
coding sequence from alignment at E_fasciculatus_S2_contig8028:5573..6425-

protein sequence of mRNA_E_fasciculatus_S2_contig8028.16193.1

>prot_E_fasciculatus_S2_contig8028.16193.1 ID=prot_E_fasciculatus_S2_contig8028.16193.1|Name=mRNA_E_fasciculatus_S2_contig8028.16193.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=59bp
MAVECGRSSGDLVHPVVYCPEFFSEEFRSTVADMKNSVADRSNAQVSCAG
QFIANHMEA

mRNA from alignment at E_fasciculatus_S2_contig8028:5573..6425-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig8028.16193.1 ID=mRNA_E_fasciculatus_S2_contig8028.16193.1|Name=mRNA_E_fasciculatus_S2_contig8028.16193.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=853bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8028:5573..6425- (Ectocarpus fasciculatus EfasUO2)
CGCTCGAGAGGATGGCGGTCGAGTGCGGGCGATCGTCGGGCGACCTCGTG
CACCCCGTGGTCTACTGCCCCGAGTTCTTCAGCGAAGAGTTTAGGTTCGT
CAGCGGAGGGCGTTGAGAGCCCGGGGGGGGGGGGGGGGGTGGGCGCGGGG
GTTGGGGTTTTCTTCGGGGGGGGGAAGGGGGGGGGGGGCGGCGCGGCCGG
TCGGNNNNNNNNNNGGTTGGCGGGGGGGGGGGGTGGGGGGCGGGGGGGGG
GGGGGGGGGGATTGGGGTGCGTGTTGCGGTATTTATGCGGGGGGGGAGGG
GGGGGGGGGGGCTGAGAGCCCGGCTGGTCGGCGTGCGTGTTCCTGTATGT
ATGCGTCTTGTGGTTGCCATGCGATCAAGTTGGACGCTGAAGCACAACGC
TGCTTTGCGAGAGGCAAACAGCACAATCACAATCTCTCCAGGCTGCTTGC
TGCATCGCACTGCTCCTATCAGCGGGTTTTTACCGGAAAGGGTGGAGGAC
AGCCCGCAACGGGTACCCGCTTGACGTACGACTGCGAACTTTCTTCCGTA
TGGCGATGACCGGATCTTGTTGGCGTGTACGATACCAGATGGACCCGTGT
TTCCCGGATATGCCCACCGCAACTACCCAAGCTTGTCCGAGATTCCTTGA
AAGCTGACGATCGACATTGTTTGCTACTTCCTCCTCGCCGTCGGGGCGTG
GGCATCGCTAATCCACCCACGCTCGCCGCTGCCGCGTTGTGTGCCATGGC
AATATGCAGGTCCACCGTTGCTGACATGAAAAACTCGGTGGCAGACCGCT
CGAACGCTCAGGTGTCGTGCGCCGGGCAGTTCATCGCGAACCACATGGAG
GCG

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8028:5573..6425-

>mRNA_E_fasciculatus_S2_contig8028.16193.1 ID=mRNA_E_fasciculatus_S2_contig8028.16193.1|Name=mRNA_E_fasciculatus_S2_contig8028.16193.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=177bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8028:5573..6425- (Ectocarpus fasciculatus EfasUO2)
ATGGCGGTCGAGTGCGGGCGATCGTCGGGCGACCTCGTGCACCCCGTGGT
CTACTGCCCCGAGTTCTTCAGCGAAGAGTTTAGGTCCACCGTTGCTGACA
TGAAAAACTCGGTGGCAGACCGCTCGAACGCTCAGGTGTCGTGCGCCGGG
CAGTTCATCGCGAACCACATGGAGGCG