mRNA_E_fasciculatus_S2_contig802.16188.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig802.16188.1
Unique NamemRNA_E_fasciculatus_S2_contig802.16188.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig802.16188.1 vs.
Match: LMWPc (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L511_9PHAE)

HSP 1 Score: 439 bits (1129), Expect = 1.090e-154
Identity = 228/258 (88.37%), Postives = 233/258 (90.31%), Query Frame = 1
Query:    1 MVQVVAPGRALTRFLGLVALASRFCSAFVAP--GGPAPLGASLRRSTSTFARAAATASIPPVNAEKRSTSLMMAGEGGKTRVLFVCLGNICRSPTAEAVFKQVTSKAGDADKFDIDSCGTGGGNPSWYKEGGESYHTGDSPDARMTAAAEKRGVILSGASRPLTPGDFDKFDLVVGMDAANTKAMSTAAEHWGKGQEATSKLRTMTSYCRSSGDVKSVPDPYYGGPQ------GFETVLDLLDDACQGLLEKCRAGEA 750
            MVQ V PGRALT F+ L ALASRFCSAFVAP  GGPAPL ASLR S    ARAAATASIPPVNA KR TSL+MAGEGGKTRVLFVCLGNICRSPTAEAVFKQVTSKAGDADKF+IDSCGTGGGNPSWYKEGGESYHTGDSPDARMTAAA KRGV+LSGASRPLTPGDFDKFDLVVGMD ANTKAMSTAAEHWGK QEA SKLRT+TSYCRSSGDVKSVPDPYYGGPQ      GFETVLDLLDDACQGLLEKCRAGEA
Sbjct:    1 MVQAVEPGRALTSFIVLSALASRFCSAFVAPRLGGPAPLRASLRWSIPRVARAAATASIPPVNAGKRPTSLVMAGEGGKTRVLFVCLGNICRSPTAEAVFKQVTSKAGDADKFEIDSCGTGGGNPSWYKEGGESYHTGDSPDARMTAAAAKRGVMLSGASRPLTPGDFDKFDLVVGMDEANTKAMSTAAEHWGKSQEAISKLRTITSYCRSSGDVKSVPDPYYGGPQVGKSAGGFETVLDLLDDACQGLLEKCRAGEA 258          
BLAST of mRNA_E_fasciculatus_S2_contig802.16188.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZB6_9STRA)

HSP 1 Score: 230 bits (587), Expect = 1.160e-72
Identity = 108/170 (63.53%), Postives = 130/170 (76.47%), Query Frame = 1
Query:  220 EGGKTRVLFVCLGNICRSPTAEAVFKQVTSKAGDADKFDIDSCGTGGGNPSWYKEGGESYHTGDSPDARMTAAAEKRGVILSGASRPLTPGDFDKFDLVVGMDAANTKAMSTAAEHWGKGQEATSKLRTMTSYCRSSGDVKSVPDPYYGGPQGFETVLDLLDDACQGLLE 729
            E GKT+V+FVCLGNICRSPTAEAVF +    AG  D+F I+SCGTGGG+  WY + G SYH G+SPD RMTAAA  RG+ L GASRPLTP D D FD ++ MD +N +A++ AA +WGK  +A  K + MTSYC+   D+KSVPDPYYGG QGFETVLD+L+DAC GLLE
Sbjct:   56 EIGKTKVIFVCLGNICRSPTAEAVFDKKVQDAGRQDQFFIESCGTGGGSADWYMQSGFSYHEGESPDRRMTAAASNRGITLCGASRPLTPEDLDIFDYIIAMDGSNKQAITEAASYWGKSAQAAQKTKMMTSYCKKF-DMKSVPDPYYGGAQGFETVLDILEDACTGLLE 224          
BLAST of mRNA_E_fasciculatus_S2_contig802.16188.1 vs.
Match: Phosphotyrosine (protein phosphatase I superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBG2_9STRA)

HSP 1 Score: 224 bits (572), Expect = 8.720e-71
Identity = 108/172 (62.79%), Postives = 128/172 (74.42%), Query Frame = 1
Query:  235 RVLFVCLGNICRSPTAEAVFKQVTSKAGDADKFDIDSCGTGGGNPSWYKEGGESYHTGDSPDARMTAAAEKRGVILSGASRPLTPGDFDKFDLVVGMDAANTKAMSTAAEHWGKGQEATSKLRTMTSYCRSSGDVKSVPDPYYGGPQGFETVLDLLDDACQGLLEKCRAGEA 750
            +VLFVCLGNICRSP+AEAVF+ V  KA  AD F IDSCGTGGG   WY++GG SYH GD  DARMT AA +RGV L+  SRP+ P D D+FDL++GMD AN +A+  AA +WGK + A +KLR MTSYC       +VPDPYYGGP+GFE VLDLL+DAC+GLL    AG A
Sbjct:   34 KVLFVCLGNICRSPSAEAVFRSVVEKAEKADNFVIDSCGTGGGMRGWYRDGGRSYHEGDPADARMTEAAAQRGVHLTSISRPMRPSDLDEFDLIIGMDGANKQAVIEAAHYWGKKELAEAKLRNMTSYCTKHKSA-TVPDPYYGGPEGFEKVLDLLEDACEGLLLSIDAGTA 204          
BLAST of mRNA_E_fasciculatus_S2_contig802.16188.1 vs.
Match: Tyrosine (phosphatase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PHL2_9CHLO)

HSP 1 Score: 222 bits (566), Expect = 6.010e-70
Identity = 111/186 (59.68%), Postives = 127/186 (68.28%), Query Frame = 1
Query:  214 AGEGGKTRVLFVCLGNICRSPTAEAVFKQVTSKAGDADKFDIDSCGTGGGNPSWYKEGGESYHTGDSPDARMTAAAEKRGVILSGASRPLTPGDFDKFDLVVGMDAANTKAMSTAAEHWGKG--------QEATSKLRTMTSYCRSSGDVKSVPDPYYGGPQGFETVLDLLDDACQGLLEKCRAGE 747
            A + G+T VLFVCLGNICRSPTAEA+F+ V  + G A  FDIDSCGTGGG   WYK GG SYH GD  D RMTAAA  RGV L+  SRPL P DF +F  +VGMD AN +A+ TAA+ W           +EA  ++  MTSYC  +  V  VPDPYYGGPQGFETVLDLLDDAC GLL   +A E
Sbjct:   10 AEQAGRTGVLFVCLGNICRSPTAEAMFRAVVEREGVAGAFDIDSCGTGGGASGWYKPGGFSYHEGDPADPRMTAAAAGRGVRLTSRSRPLAPADFGRFKYIVGMDGANVRAILTAADFWAANGSADVPPAEEARGQVSLMTSYCTETEGVTEVPDPYYGGPQGFETVLDLLDDACTGLLRHIQAEE 195          
BLAST of mRNA_E_fasciculatus_S2_contig802.16188.1 vs.
Match: LMWPc (domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WI06_9CHLO)

HSP 1 Score: 221 bits (563), Expect = 2.790e-69
Identity = 111/175 (63.43%), Postives = 125/175 (71.43%), Query Frame = 1
Query:  238 VLFVCLGNICRSPTAEAVFKQVTSKAGDADKFDIDSCGTGGGNPSWYKEGGESYHTGDSPDARMTAAAEKRGVILSGASRPLTPGDFDKFDLVVGMDAANTKAMSTAAEHW-------GKGQEATS-KLRTMTSYCRSSGDVKSVPDPYYGGPQGFETVLDLLDDACQGLLEKCR 738
            VLFVCLGNICRSPTAEAVFK V  +AG AD FDIDSCGTGGGNP W+ EGG SYH GD  D+RMT  A KRGV+L+  SRPL P DF +FD +VGMDA N +A+ TAA++W        K  EA   +L  MTSYC        VPDPYYGGP GFE VLDLLDDAC+GLL + R
Sbjct:   35 VLFVCLGNICRSPTAEAVFKAVVQRAGLADAFDIDSCGTGGGNPDWFTEGGWSYHEGDPADSRMTLTARKRGVLLTSRSRPLAPLDFSRFDYIVGMDAKNIRAIRTAADYWRVRPMGADKVPEAYGQRLSLMTSYCTKFKGEPEVPDPYYGGPAGFERVLDLLDDACEGLLTQIR 209          
BLAST of mRNA_E_fasciculatus_S2_contig802.16188.1 vs.
Match: LMWPc (domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VZ39_CHLIN)

HSP 1 Score: 219 bits (558), Expect = 1.500e-68
Identity = 108/178 (60.67%), Postives = 125/178 (70.22%), Query Frame = 1
Query:  229 KTRVLFVCLGNICRSPTAEAVFKQVTSKAGDADKFDIDSCGTGGGNPSWYKEGGESYHTGDSPDARMTAAAEKRGVILSGASRPLTPGDFDKFDLVVGMDAANTKAMSTAAEHWGKG--------QEATSKLRTMTSYCRSSGDVKSVPDPYYGGPQGFETVLDLLDDACQGLLEKCR 738
            K  VLFVCLGNICRSPTAEAVFK V  +AG A+ FDIDSCGTGGGNP W+ EGG SYH GD+ D+RMT  A KRGV+L+  SRPL P DF +FD +VGMDA N +A+ TAA++W           Q    +L  MT+YC        VPDPYYGGP GFE VLDLLDDAC+GLL + R
Sbjct:   30 KIGVLFVCLGNICRSPTAEAVFKAVVQRAGLAEAFDIDSCGTGGGNPDWFTEGGWSYHEGDAADSRMTLTARKRGVLLTSRSRPLAPLDFGRFDYIVGMDAKNIRAIRTAADYWRVRPMGADTVPQSYGERLSLMTAYCSKFKGEPEVPDPYYGGPAGFERVLDLLDDACEGLLAQIR 207          
BLAST of mRNA_E_fasciculatus_S2_contig802.16188.1 vs.
Match: LMWPc (domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X013_9CHLO)

HSP 1 Score: 218 bits (555), Expect = 2.840e-67
Identity = 104/175 (59.43%), Postives = 124/175 (70.86%), Query Frame = 1
Query:  229 KTRVLFVCLGNICRSPTAEAVFKQVTSKAGDADKFDIDSCGTGGGNPSWYKEGGESYHTGDSPDARMTAAAEKRGVILSGASRPLTPGDFDKFDLVVGMDAANTKAMSTAAEHW--------GKGQEATSKLRTMTSYCRSSGDVKSVPDPYYGGPQGFETVLDLLDDACQGLLE 729
            K RV+FVCLGNICRSPTAEAVF+ V  + G +  FDIDSCGTGGGNP WY  GG SYH GD PD RMT+AA+KRG++L+  SRPLTP D  +FDL++GMDA N  A+  A  +W         + +   SK   MT YCR+   V  VPDPYYGGP+GFE VLDLL DAC+GLL+
Sbjct:   83 KLRVIFVCLGNICRSPTAEAVFRAVVERRGVSHLFDIDSCGTGGGNPDWYCRGGWSYHEGDEPDRRMTSAAQKRGIVLTSRSRPLTPMDVTRFDLIIGMDAKNQYAVKEATSYWLSEGMIESSEAEVLRSKNSLMTDYCRTYKGVTEVPDPYYGGPEGFERVLDLLYDACEGLLD 257          
BLAST of mRNA_E_fasciculatus_S2_contig802.16188.1 vs.
Match: LMWPc (domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GHR6_9CHLO)

HSP 1 Score: 216 bits (551), Expect = 7.880e-67
Identity = 110/191 (57.59%), Postives = 130/191 (68.06%), Query Frame = 1
Query:  196 STSLMMAGEGG--KTRVLFVCLGNICRSPTAEAVFKQVTSKAGDADKFDIDSCGTGGGNPSWYKEGGESYHTGDSPDARMTAAAEKRGVILSGASRPLTPGDFDKFDLVVGMDAANTKAMSTAAEHW-----GKGQ---EATSKLRTMTSYCRSSGDVKSVPDPYYGGPQGFETVLDLLDDACQGLLEKCR 738
            + S   A E G  K  VLFVCLGNICRSPTAEAVF+ V  KAG    FDIDSCGTGGGNP W+ EGG SYH GD  D+RMT  A KRGV+L+  SRPL P D  +FD +VGMD  N +A+ TAA++W     G+G+   + + ++  MTSYCR       VPDPYYGG  GFE VLDLL+DAC+GLLE  R
Sbjct:   65 TVSAAAASESGNRKAGVLFVCLGNICRSPTAEAVFRSVVEKAGLTAAFDIDSCGTGGGNPDWFTEGGWSYHEGDPADSRMTMTARKRGVLLTSRSRPLQPLDLSRFDYIVGMDPKNLRAIKTAADYWLVRPMGEGKVPPDYSRRVVLMTSYCRKFTGAPEVPDPYYGGAAGFERVLDLLEDACEGLLESIR 255          
BLAST of mRNA_E_fasciculatus_S2_contig802.16188.1 vs.
Match: Protein-tyrosine (phosphatase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R5H5_9CHLO)

HSP 1 Score: 216 bits (551), Expect = 8.920e-67
Identity = 105/179 (58.66%), Postives = 126/179 (70.39%), Query Frame = 1
Query:  229 KTRVLFVCLGNICRSPTAEAVFKQVTSKAGDADKFDIDSCGTGGGNPSWYKEGGESYHTGDSPDARMTAAAEKRGVILSGASRPLTPGDFDKFDLVVGMDAANTKAMSTAAEHWG-KGQEATS----KLRTMTSYCRSSGDVKSVPDPYYGGPQGFETVLDLLDDACQGLLEKCRAGEA 750
            KT VLFVCLGNICRSPTAEAV   V  +AG   +F +DSCGTGGGNP+WYKEGG SYH G+  D RMT  A +RGV L+  SRPL P D ++FD ++GMD++N  ++  AA++W  KG +       KL+TMTSYCR       VPDPYYGG QGFE VLDLLDDAC GLL+ C   E+
Sbjct:   83 KTSVLFVCLGNICRSPTAEAVLTAVVKEAGLESRFVVDSCGTGGGNPNWYKEGGWSYHEGEDADPRMTEVAARRGVHLTSKSRPLKPDDLNRFDYIIGMDSSNMASIQVAADYWASKGYDIPKNYRGKLKTMTSYCRKHKGETEVPDPYYGGTQGFERVLDLLDDACSGLLQDCMQMES 261          
BLAST of mRNA_E_fasciculatus_S2_contig802.16188.1 vs.
Match: Tyrosine (phosphatase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VF53_9CHLO)

HSP 1 Score: 212 bits (540), Expect = 4.160e-66
Identity = 111/182 (60.99%), Postives = 129/182 (70.88%), Query Frame = 1
Query:  211 MAGEGG-KTRVLFVCLGNICRSPTAEAVFKQVTSKAGDADKFDIDSCGTGGGNPSWYKEGGESYHTGDSPDARMTAAAEKRGVILSGASRPLTPGDFDKFDLVVGMDAANTKAMSTAAEHW-GKG------QEATSKLRTMTSYCRSSGDVK--SVPDPYYGGPQGFETVLDLLDDACQGLL 726
            MAG+ G KT+VLFVCLGNICRSP+AEAVFK V  KAG + +F+IDSCGTGGG+ +WY  GG SYH GD  D RMTA A  RGV L+  SRPL P D ++FD +VGMDAAN  A+  AAEHW G G       +  SKL  MT + RS    K   VPDPYYGG +GF+ VLDLLDDAC+GLL
Sbjct:    1 MAGDNGEKTKVLFVCLGNICRSPSAEAVFKDVVEKAGVSGQFEIDSCGTGGGSSNWYLPGGFSYHEGDPADGRMTATARTRGVTLTSRSRPLRPSDLEEFDYIVGMDAANLAAIRRAAEHWRGAGGGGAVPPDYGSKLSLMTDFLRSQQFAKFNEVPDPYYGGQKGFDLVLDLLDDACKGLL 182          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig802.16188.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
LMWPc1.090e-15488.37domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Hypothetical1.160e-7263.53protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Phosphotyrosine8.720e-7162.79protein phosphatase I superfamily n=1 Tax=Tribonem... [more]
Tyrosine6.010e-7059.68phosphatase n=1 Tax=Raphidocelis subcapitata TaxID... [more]
LMWPc2.790e-6963.43domain-containing protein n=1 Tax=Chlamydomonas sc... [more]
LMWPc1.500e-6860.67domain-containing protein n=1 Tax=Chlamydomonas in... [more]
LMWPc2.840e-6759.43domain-containing protein n=1 Tax=Chlamydomonas eu... [more]
LMWPc7.880e-6757.59domain-containing protein n=1 Tax=Volvox reticulif... [more]
Protein-tyrosine8.920e-6758.66phosphatase n=1 Tax=Tetraselmis sp. GSL018 TaxID=5... [more]
Tyrosine4.160e-6660.99phosphatase n=1 Tax=Micractinium conductrix TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig802contigE_fasciculatus_S2_contig802:23305..27038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score459.1
Seed ortholog evalue1.3e-126
Seed eggNOG ortholog2880.D8LN75
Preferred namestp1
Model size753
KEGG rclassRC00017
KEGG koko:K01104,ko:K14394
KEGG ReactionR00548,R02135
KEGG Pathwayko00730,ko00740,ko01100,map00730,map00740,map01100
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0003993,GO:0004721,GO:0004725,GO:0004726,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0023052,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0071704,GO:0140096,GO:1901564
Exons5
EggNOG free text desc.non-membrane spanning protein tyrosine phosphatase activity
EggNOG OGsCOG0394@1,KOG3217@2759
Ec32 ortholog descriptionProtein tyrosine phosphatase
Ec32 orthologEc-05_003800.1
EC3.1.3.2,3.1.3.48
Cds size753
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842464.2939506-CDS-E_fasciculatus_S2_contig802:23304..233821696842464.2939506-CDS-E_fasciculatus_S2_contig802:23304..23382Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig802 23305..23382 -
1696842464.3073373-CDS-E_fasciculatus_S2_contig802:24245..243951696842464.3073373-CDS-E_fasciculatus_S2_contig802:24245..24395Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig802 24246..24395 -
1696842464.319899-CDS-E_fasciculatus_S2_contig802:25502..256531696842464.319899-CDS-E_fasciculatus_S2_contig802:25502..25653Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig802 25503..25653 -
1696842464.3288412-CDS-E_fasciculatus_S2_contig802:26075..263551696842464.3288412-CDS-E_fasciculatus_S2_contig802:26075..26355Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig802 26076..26355 -
1696842464.3367627-CDS-E_fasciculatus_S2_contig802:26944..270381696842464.3367627-CDS-E_fasciculatus_S2_contig802:26944..27038Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig802 26945..27038 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig802.16188.1prot_E_fasciculatus_S2_contig802.16188.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig802 23305..27038 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig802.16188.1

>prot_E_fasciculatus_S2_contig802.16188.1 ID=prot_E_fasciculatus_S2_contig802.16188.1|Name=mRNA_E_fasciculatus_S2_contig802.16188.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=251bp
MVQVVAPGRALTRFLGLVALASRFCSAFVAPGGPAPLGASLRRSTSTFAR
AAATASIPPVNAEKRSTSLMMAGEGGKTRVLFVCLGNICRSPTAEAVFKQ
VTSKAGDADKFDIDSCGTGGGNPSWYKEGGESYHTGDSPDARMTAAAEKR
GVILSGASRPLTPGDFDKFDLVVGMDAANTKAMSTAAEHWGKGQEATSKL
RTMTSYCRSSGDVKSVPDPYYGGPQGFETVLDLLDDACQGLLEKCRAGEA
*
back to top

mRNA from alignment at E_fasciculatus_S2_contig802:23305..27038-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig802.16188.1 ID=mRNA_E_fasciculatus_S2_contig802.16188.1|Name=mRNA_E_fasciculatus_S2_contig802.16188.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3734bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig802:23305..27038- (Ectocarpus fasciculatus EfasUO2)
ATGGTCCAAGTAGTAGCACCAGGAAGGGCTCTCACAAGATTCTTAGGTCT TGTCGCCCTAGCGTCGCGTTTCTGCAGCGCGTTTGTTGCTCCCGGTGAGA GGGATATTGAACTCCTCGTTGTGTCCTGTTGTCAACTGATCATCATGTGC AACGTGGGTTGCGTTGTGTTGGCATGTTTGCATACGTTGGCGGGTACACC CTCGCGCCTGCTGCAGGATCGCAATGCTGGGCTGTTTCATCCCAGAAGGC ATACAGTCGTCGCGTCAAGAACGCCTCGATGACACAACCTCAACGACACC TCACGAAGGTTGAAGGTTACTCTGTACTACGTTGTACGCTGGGATGACGG TGGTGTACGTACATAGTGTCCTACACAAACCATGTAGCATACAAAACAGC AATACAAACTATACAGCAGTGTATTTTTGCCCGGCGTGCCCTGCTGTCGA CAACAGCAGCACTGCTGTTGCCCAGTCACAGCTGTAGGCATTCGCAGCTG TCACTGCTGTGCCCTGGGTGGAATGTAGCAAGAAGGACGTGTGCGCTTTG TCGTCCCGTCCATTGTTTGTCGTTCGACATTACCAACAACGAATTCGTTC TCTCACGACGGGGTACCAACCACCACCCCGCGCCACAAGTAGAGTTGTAC CTCACCACGTACCCCCCCCCGTGCTTGCCAAAGGAGGACCGGCACCCCTC GGCGCTTCTCTTCGTAGGAGCACCTCCACTTTTGCCCGGGCCGCCGCCAC CGCCAGCATCCCGCCTGTCAACGCTGAGAAACGGTCGACGTCGCTGATGA TGGCGGGAGAAGGCGGCAAGACGCGGGTCCTTTTCGTTTGCCTCGGCAAT ATTTGCAGAAGCCCTACGGCCGAAGCTGTTTTCAAGCAGGTGACCTCCAA GGCAGGAGACGCAGACAAGTTCGATATCGACTCGTGCGGGACCGGAGGAG GAAATCCAAGCTGGTGAGCGGGTGAAAGTGGTCGGGGGGCACCAGTAAAC CTCGAGGGCAGTGCTGCACTCATTCTGGAGCGCCATTAAACGTTCTCAAG TCTGGCATTGAAACTCGTAGAGCAGGCGCGGGCAGCCGAGGCTGGTGGAG GGGGGAGGGGTAGGAGGGGGAGAACGTGTCGCCCAACAGCGATGGTTCTG TACGAGCCAACGACAGGTGGTTTTTCTGTCTTCTGTAAGGCCGTAACGAC ACAAAAGTGTGTACCCACTATCATTCATCCGCTTCCGTCATGCATGACCA CGGAGGCTCTCGTAGCCCATCAACGCGATAATAACTAGAAGCCGCTAGCA CCTCTACGTGCCGCAAAGCTTCTGAACACACAGCAGCAGCCGTTGCGTTG ACTTTCCCTCCATCAACCCTTCTCACACTTGACAGGTACAAAGAGGGCGG GGAGAGCTATCACACAGGCGACTCCCCGGATGCTCGAATGACGGCTGCCG CGGAAAAGAGAGGGGTAATCTTGAGCGGGGCCTCGCGGCCTCTGACGCCG GGTGATTTCGACAAGTTCGACCTCGTCGTGGGTATGGTGAGAGGCAGGAA AGGGGAAAGGAGTTAGAGTAAATGTAAGTACTGTTGCAGAAGTTTGGTTT ATTGGGAGATAGCGCCGGTGAAAGCAAGGCGCTAGGAAATTTGGTGCGTG TTCCCAAGGTCTGAAACGACGGCACTTGGAGGCGGGATGAGCACGGCTAT GAGACTGAGGATGGATGGAACCCCGTTCTCCCTGCTTTTTTGTTGTTGTG GACAATTTCGACTAAAGGCTCAACCTATATTCAGGCTGCATCGAAAGATG ATTGGGGAGGAATCTGAGTGTTCAAGTCACACGAGCCAGGTGTTTGCATC CGCTTGTTGTGATGCGAATGGCGTGTGTGCGTCCATTTCTCAAGCCGCGA AGTTGGTCTGTTGTGACAGAGTATTGGCCGACGTCGAGAACCGTTCAGTA GCTCGCCGTCAGATTGCTGACCAGGCTGATTCGCCCATGCAGCAGCTGCT TGTGGTCGGCAGCTCGTTCTGTTATTGGTAAAGGGCGTGCATACGGCAGC GCAGGAAAGTAGATTTACGTCAGTTGACAACTGATTTATAGGCGCTGAGA CGCACAGCGGACAAACGTTTGCCTCTACTGTACTGCATCGAGAGAGGCGT GTTTACACCTACAAGGCAGGTTGCGGGCATCCTGATCGCAGAGGGCTAGT TTTCTTCGCTGTTGTCTTGAGTCAAACCCCAAATTTCGGCATTGACCTCC TCATTGTCAAGCAAACGTGGCGAGCACAGGAACGGGTGTACTGAATCCTG TCTTGTCACCTTGCGGTTCGATCGAGTATAATTATTTGATGGCTTGAAGT AGCGATAAAAACCGGCTCAAGGCCTACTCGCGACGATCTATTTATTGGTG AGTGCGGCAGGAGGGTCCGACGGAGGAAAGCTTTGGAGAATTTTTCCTTT CTCCAGGCGTGCTGTGGTGGACCTTGCCAGTGCTATCGTCAGAGGTGTTA CTGAAGCAGATGCAGTTTTTGGGGGGGGGGGGGGGGGGGGGGGGGCTTTA AGGCCCCAAGGTACTTAAAAACTCTGCGTAAAACCAATCCGCCCTCCATA CTATCCGCAAACTCCCCCCATTCCCACGTCCTCGCGAAAAAAGGACGCGG CAAACACCAAGGCGATGTCAACTGCTGCCGAGCACTGGGGCAAGGGCCAG GAGGCGACCTCGAAGCTGCGGACGATGACTTCCTACTGCAGGTCGAGCGG AGACGTGAAGAGCGTCCCGGACCCATACTACGGCGGACCTCAGGTCTGCA AGAGTGTGCTGGTGTTTGCAGGGATGAATAATTAAGGACAAGTTATGCGG GAAAACGTTTTGCTGGTGCTGGTGCTGCTGTTTCTTCTTGCTACCCAACC CTGTCATTGAAGCCGTTGCGAGTGCCTGAAGCCTGCACAACATTGCCATA TTCATACGTTCTCACTCTTCTCAATCAGTTTTGGAAAGGAAAGTACACAG ATCATCGAGTCGCGCCTCTCAGATGTTTTATGACTGCTTTGGCGATGAGC TTTCGTTGTGGTCACGTCAAATTACTCTGCGTTGCGTTGCTTCTCTTTTC TTGAACGTTTCAAACGGCTTACCCTTGTGTTGCGTTTTATGCCACGATTA TCGCACGTTGCCCCAGTTGATATCAAGTAGGTTGTTTTGACTCTAGGTTG GGTTCTTTATTGCAATTTTTTCGAGGCCGGACAATCAGTAATCACGAAAC AGAGAAGGAACAGCTGACAGTGGTATTGGGGCTTGAAGGCAAGTACCGCA GGGGGAAGATGCGAAGGAAGAACAAAAGATGCCTGTATTTCTCTTCCTCC CGTAATACATCGGCGGGTGCGTGCTTGTGTTCCTCCTATCTGTTGTGGCG CCGCAAGTTTACATACTTTTTCGTTGAACATGTTTACTACGAATCACCTC AGGTAACGCCGGATGTTCGCACAGGGTTTCGCTTTTTTTTTCTATGGGAC GAACATACATATGAACACGCCGCATGCGAAGCTGCGAAACCACGCTATTT CTGTACGGTATAGGTTGGTGTTGGAAACTGAGTATCTCTCTTCACTGTTC GAGTGCAATTCAAAGATCAGTGTATCAACATCGAACCTCATCACATCAAA ATTCAGGGTTTCGAGACCGTGCTGGATCTTTTGGACGACGCATGCCAGGG TCTGCTCGAGAAGTGTCGCGCAGGGGAAGCGTGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig802:23305..27038-

>mRNA_E_fasciculatus_S2_contig802.16188.1 ID=mRNA_E_fasciculatus_S2_contig802.16188.1|Name=mRNA_E_fasciculatus_S2_contig802.16188.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=753bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig802:23305..27038- (Ectocarpus fasciculatus EfasUO2)
ATGGTCCAAGTAGTAGCACCAGGAAGGGCTCTCACAAGATTCTTAGGTCT
TGTCGCCCTAGCGTCGCGTTTCTGCAGCGCGTTTGTTGCTCCCGGAGGAC
CGGCACCCCTCGGCGCTTCTCTTCGTAGGAGCACCTCCACTTTTGCCCGG
GCCGCCGCCACCGCCAGCATCCCGCCTGTCAACGCTGAGAAACGGTCGAC
GTCGCTGATGATGGCGGGAGAAGGCGGCAAGACGCGGGTCCTTTTCGTTT
GCCTCGGCAATATTTGCAGAAGCCCTACGGCCGAAGCTGTTTTCAAGCAG
GTGACCTCCAAGGCAGGAGACGCAGACAAGTTCGATATCGACTCGTGCGG
GACCGGAGGAGGAAATCCAAGCTGGTACAAAGAGGGCGGGGAGAGCTATC
ACACAGGCGACTCCCCGGATGCTCGAATGACGGCTGCCGCGGAAAAGAGA
GGGGTAATCTTGAGCGGGGCCTCGCGGCCTCTGACGCCGGGTGATTTCGA
CAAGTTCGACCTCGTCGTGGGTATGGACGCGGCAAACACCAAGGCGATGT
CAACTGCTGCCGAGCACTGGGGCAAGGGCCAGGAGGCGACCTCGAAGCTG
CGGACGATGACTTCCTACTGCAGGTCGAGCGGAGACGTGAAGAGCGTCCC
GGACCCATACTACGGCGGACCTCAGGGTTTCGAGACCGTGCTGGATCTTT
TGGACGACGCATGCCAGGGTCTGCTCGAGAAGTGTCGCGCAGGGGAAGCG
TGA
back to top