mRNA_E_fasciculatus_S2_contig8017.16185.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8017.16185.1
Unique NamemRNA_E_fasciculatus_S2_contig8017.16185.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8017.16185.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.160e-15
Identity = 42/80 (52.50%), Postives = 43/80 (53.75%), Query Frame = 1 
Query:    1 QAEGCKKYRVYGYDGKPAVCCASHKKPGMVDVRSSRCEFEGCYRHPSFGHRWEKKRRFCGXXXXXXXXXXXSRNQSQKAA 240
            +AEGCKKYRVYGYDGKPAVC                          SFGHRWEKKRRFCG           SRNQSQKAA
Sbjct:   48 EAEGCKKYRVYGYDGKPAVCXXXXXXXXXXXXXXXXXXXXXXXXXXSFGHRWEKKRRFCGRHKLPDMMDVRSRNQSQKAA 127
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8017.16185.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.160e-1552.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8017contigE_fasciculatus_S2_contig8017:121..1696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size783
Hectar predicted targeting categoryother localisation
Exons2
Cds size783
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842463.978128-CDS-E_fasciculatus_S2_contig8017:120..3511696842463.978128-CDS-E_fasciculatus_S2_contig8017:120..351Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8017 121..351 +
1696842463.98974-CDS-E_fasciculatus_S2_contig8017:1144..16961696842463.98974-CDS-E_fasciculatus_S2_contig8017:1144..1696Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8017 1145..1696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8017.16185.1prot_E_fasciculatus_S2_contig8017.16185.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8017 121..1696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8017.16185.1

>prot_E_fasciculatus_S2_contig8017.16185.1 ID=prot_E_fasciculatus_S2_contig8017.16185.1|Name=mRNA_E_fasciculatus_S2_contig8017.16185.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=261bp
QAEGCKKYRVYGYDGKPAVCCASHKKPGMVDVRSSRCEFEGCYRHPSFGH
RWEKKRRFCGRHKLPDMMDVRSRNQSQKAAAAKGGRGGRGGGAGGGRGAA
ASKPAAAAGATPKGGRGGAGRKRRPAAAAAASAAAAATTASSTGGDGVIP
GSGEDVKPSSFFGGGPGTTSPLPLSLPLLGAGQGEQAWMGVPAGAGGGLV
GVSAPPPPPPGGGGGKPAAAAMGDVVGNGDDSGSSAAGAAAAAGREPRKR
GRAATGKRGR*
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mRNA from alignment at E_fasciculatus_S2_contig8017:121..1696+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8017.16185.1 ID=mRNA_E_fasciculatus_S2_contig8017.16185.1|Name=mRNA_E_fasciculatus_S2_contig8017.16185.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1576bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8017:121..1696+ (Ectocarpus fasciculatus EfasUO2)
CAGGCCGAGGGCTGCAAGAAGTACCGCGTCTACGGGTACGACGGCAAGCC
GGCCGTGTGCTGCGCCTCGCACAAGAAGCCGGGCATGGTGGACGTCCGCA
GCAGCCGGTGCGAGTTCGAGGGGTGCTACCGGCACCCCAGCTTCGGGCAC
AGGTGGGAAAAGAAGCGCCGGTTCTGCGGCCGACATAAGCTCCCCGACAT
GATGGACGTCCGCAGCCGCAACCAATCGCAGGTATGTACTACAGCACGCT
CTTTATTTTTAGAAAGGTGTACCTCCTTTGGGTCAGTTGGCTTGTGACCA
CGGAAGGCATCCGCGTCAGTTGGACCAGTACGGACATTAGAAGGTGTACC
CCCTTTGGGGCAGTAGTAGTTGGCTTGTGACCACGGAAGGCGTCCGCGTC
AGTTGGACCAGTACGGACATTAGAAGGTACAGTACTGAGCGGAGACCGGA
ACGGTTTTTAAAGTGAAGAAAACAACAACAACAACAACAACAACAGCAAC
AACAATTCTGATATTTGGTTTGGTTTTGAGTTCCTTGTTTCGTCCAGCGT
GGAGGGACGGAGGGGAGGGAGGGACCCCTCGTTTTTATTTTTATTTTTGG
TCATCACAGTAAATGTATTGTATAATTGCCTGCTTGATTTTGGTGCGTTT
GCTTGTTGACCCTTGTGAGTTTTTTTTACGCATTCGTGGCGTATGTTTGT
GATGTCTTCACATTTAGACCCGTTCCGACCTCTGCTCATGCTCAGTGCCT
TGTTATATCCGTACCGATCCACCGAGGCCAGCTATATACCTAAACGCGTG
CGATCGATATTGCTATTGCGTGTGTGAGTGTTGTTGGTGTGTTATTTTGT
TTACATCTCTCGCGGGCGGGTGCCCGGTGAACACGTCACTGCACGTACAT
ATGTTCGTTCTCCCCGACGGACCTTCTTCCTCAAACAAGCAGTATCGCTC
CCTCCCGTCCTTCCCTTCCCGTCTGTCTCCTTCACGCCGCCGTAAACGAT
CTTCGAACAACAACCAACCTCCAGAAAGCCGCAGCAGCCAAGGGGGGACG
CGGAGGGCGGGGCGGAGGAGCGGGGGGGGGGCGGGGGGCCGCCGCCTCCA
AGCCTGCCGCGGCCGCGGGGGCGACCCCGAAGGGTGGGCGGGGTGGTGCG
GGGCGAAAACGCCGGCCGGCCGCGGCGGCGGCGGCGTCGGCGGCAGCGGC
GGCGACAACAGCGAGCTCTACCGGCGGCGACGGCGTGATTCCCGGGAGCG
GGGAAGACGTGAAGCCGTCCTCTTTCTTTGGAGGAGGCCCCGGTACGACG
TCGCCGCTGCCGCTGTCGTTGCCGTTGCTGGGAGCCGGACAAGGAGAGCA
GGCGTGGATGGGCGTCCCGGCGGGGGCGGGGGGTGGGCTGGTTGGTGTTT
CCGCGCCCCCCCCCCCTCCCCCCGGCGGTGGCGGCGGCAAGCCGGCGGCG
GCGGCGATGGGAGACGTTGTCGGCAACGGCGACGACAGCGGCAGCAGTGC
CGCCGGTGCTGCCGCCGCCGCCGGGCGGGAGCCTCGGAAGCGCGGCAGAG
CAGCAACCGGGAAAAGAGGGAGGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8017:121..1696+

>mRNA_E_fasciculatus_S2_contig8017.16185.1 ID=mRNA_E_fasciculatus_S2_contig8017.16185.1|Name=mRNA_E_fasciculatus_S2_contig8017.16185.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=783bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8017:121..1696+ (Ectocarpus fasciculatus EfasUO2)
CAGGCCGAGGGCTGCAAGAAGTACCGCGTCTACGGGTACGACGGCAAGCC
GGCCGTGTGCTGCGCCTCGCACAAGAAGCCGGGCATGGTGGACGTCCGCA
GCAGCCGGTGCGAGTTCGAGGGGTGCTACCGGCACCCCAGCTTCGGGCAC
AGGTGGGAAAAGAAGCGCCGGTTCTGCGGCCGACATAAGCTCCCCGACAT
GATGGACGTCCGCAGCCGCAACCAATCGCAGAAAGCCGCAGCAGCCAAGG
GGGGACGCGGAGGGCGGGGCGGAGGAGCGGGGGGGGGGCGGGGGGCCGCC
GCCTCCAAGCCTGCCGCGGCCGCGGGGGCGACCCCGAAGGGTGGGCGGGG
TGGTGCGGGGCGAAAACGCCGGCCGGCCGCGGCGGCGGCGGCGTCGGCGG
CAGCGGCGGCGACAACAGCGAGCTCTACCGGCGGCGACGGCGTGATTCCC
GGGAGCGGGGAAGACGTGAAGCCGTCCTCTTTCTTTGGAGGAGGCCCCGG
TACGACGTCGCCGCTGCCGCTGTCGTTGCCGTTGCTGGGAGCCGGACAAG
GAGAGCAGGCGTGGATGGGCGTCCCGGCGGGGGCGGGGGGTGGGCTGGTT
GGTGTTTCCGCGCCCCCCCCCCCTCCCCCCGGCGGTGGCGGCGGCAAGCC
GGCGGCGGCGGCGATGGGAGACGTTGTCGGCAACGGCGACGACAGCGGCA
GCAGTGCCGCCGGTGCTGCCGCCGCCGCCGGGCGGGAGCCTCGGAAGCGC
GGCAGAGCAGCAACCGGGAAAAGAGGGAGGTGA
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