mRNA_E_fasciculatus_S2_contig8011.16182.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8011.16182.1
Unique NamemRNA_E_fasciculatus_S2_contig8011.16182.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8011.16182.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV45_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 1.750e-62
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 1 
Query:    1 MAFKQLLALACLVASSLAFVAPMTTLRAPATTSARSTASARGGALMSCRVNAKKEKRTRNRLNMRKFNKRGTSRKKILRVERQERAAEDEAEFLAKIFHSGMDDWEEVDIFSE 339
            MAFKQLLALACLVASSLAFV PMTTLRAPATTSARSTASARGGALMSCRVNAKKEKRTRNRLNMRKFNKRGTSRKKILRVERQERAAEDEAEFLAK+FHSGMDDWEEVDIFSE
Sbjct:    1 MAFKQLLALACLVASSLAFVTPMTTLRAPATTSARSTASARGGALMSCRVNAKKEKRTRNRLNMRKFNKRGTSRKKILRVERQERAAEDEAEFLAKVFHSGMDDWEEVDIFSE 113
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BLAST of mRNA_E_fasciculatus_S2_contig8011.16182.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKP5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.950e-10
Identity = 45/92 (48.91%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:   19 LALACLVASSLAFVAPMTTLRAPATTSARSTASARGGALMSCRVNAKKEKRTRNRLNMRKFNKRGTSRKKILRVERQERAAEDEAEFLAKIF 294
            LALA L A++ AF+AP        +   +ST+++     M+CR NAKK+K  RN+ NMRKF KRGTS+KKI+R +RQ+ A E EA+F+AK++
Sbjct:    7 LALAFLAATASAFLAPSAFTGMQIS---QSTSTSESRLSMACRNNAKKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKLY 95
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BLAST of mRNA_E_fasciculatus_S2_contig8011.16182.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDX5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.010e-9
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:   31 CLVASSLAFVAPMTTLRAPATTSARSTASARGGALMSCRVNAKKEKRTRNRLNMRKFNKRGTSRKKILRVERQERAAEDEAEFLAKI 291
            CLVA + AF +  T     A +   +T +A     M+CR NAKK+K  RN+ NMRKF KRGTS+KKI+R +RQ+ A E EA+F+AK+
Sbjct:   12 CLVAMATAFTSAFT---GAALSQGTATTAAASPLTMACRNNAKKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKL 95
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BLAST of mRNA_E_fasciculatus_S2_contig8011.16182.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YX41_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 5.110e-8
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:  133 LMSCRVNAKKEKRTRNRLNMRKFNKRGTSRKKILRVERQERAAEDEAEFLAKIFHS 300
            L +CRVNAKKEKR RNR NMRKF KRG SRKK+++     +A + E EFLAK F S
Sbjct:   62 LEACRVNAKKEKRQRNRENMRKFQKRGLSRKKVMKKAFSAQARQAENEFLAKCFTS 117
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BLAST of mRNA_E_fasciculatus_S2_contig8011.16182.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MH60_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.330e-8
Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:   34 LVASSLAFVAPMTTLRAPATTSARSTASARGGALMSCRVNAKKEKRTRNRLNMRKF-NKRGTSRKKILRVERQERAAEDEAEFLAKIF 294
            L+ + LA +A  T   APAT   R++      AL  CRVNAKKEKR RNR NMRKF +KRGTSR+K ++  +  +A   EAEFLAK F
Sbjct:    7 LLVAILAVLAISTQAFAPATFGVRTST-----ALNGCRVNAKKEKRQRNRENMRKFKSKRGTSRRKTMKKLQSNQARAAEAEFLAKCF 89
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BLAST of mRNA_E_fasciculatus_S2_contig8011.16182.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9AXI8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.690e-7
Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:   49 LAFVAPMTTLRAPATTSARSTASARGGALMSCRVNAKKEKRTRNRLNMRKF-NKRGTSRKKILRVERQERAAEDEAEFLAKIFHSG 303
            LA +A  T   AP+    R+T+S    AL +CRVNAKKEKR RNR NMRKF +KRGTSR+K ++  +   A   EAEF+AK F  G
Sbjct:   12 LAVLALSTQAFAPSPFGLRTTSST---ALEACRVNAKKEKRQRNRENMRKFKSKRGTSRRKTMKKLQANAARASEAEFIAKCFALG 94
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BLAST of mRNA_E_fasciculatus_S2_contig8011.16182.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A5Y1_TRICV)

HSP 1 Score: 55.1 bits (131), Expect = 1.770e-7
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:  133 LMSCRVNAKKEKRTRNRLNMRKFN-KRGTSRKKILRVERQERAAEDEAEFLAKIFHS 300
            L +CR NAKKEKR RNR NMRKF  KRGTSRKK ++  +   A + EAEFLAK F S
Sbjct:   39 LEACRANAKKEKRQRNRENMRKFQRKRGTSRKKAMKKIQSNEARQKEAEFLAKCFTS 95
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BLAST of mRNA_E_fasciculatus_S2_contig8011.16182.1 vs.
Match: Hypothetical (protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GM72_CYCTE)

HSP 1 Score: 54.3 bits (129), Expect = 3.760e-7
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:  133 LMSCRVNAKKEKRTRNRLNMRKFN---KRGTSRKKILRVERQERAAEDEAEFLAKIF-HSGMDDWE 318
            L  CRVNAKKEKR RNR NMRKF    KRG SR+K+L+  +  +A ++E EF+AK F H G+ D E
Sbjct:   37 LFGCRVNAKKEKRKRNRENMRKFKSTGKRGMSRRKMLKKVQAAKARQEENEFMAKAFLHVGVTDVE 102
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BLAST of mRNA_E_fasciculatus_S2_contig8011.16182.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HRS8_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 6.990e-7
Identity = 43/89 (48.31%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:   34 LVASSLAFVAPMTTLRAPATTSARSTASARGGALMSCRVNAKKEKRTRNRLNMRKFNKRGTSRKKILRVERQERAAEDEAEFLAKIFHS 300
            LV  +LA VA  T   AP  +    TA      L  CRVNAKKEKR RNR NMRKF +RG S++K ++     +A + E EFLAK F S
Sbjct:    6 LVVLALAIVAVSTQAFAPTPSFGVRTAVESTTELQGCRVNAKKEKRQRNRENMRKFQRRGLSKRKTMKKAFSAQARQAENEFLAKCFTS 94
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BLAST of mRNA_E_fasciculatus_S2_contig8011.16182.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LUG5_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.410e-6
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:   34 LVASSLAFVAPMTTLRAPATTSARSTASARGGALMSCRVNAKKEKRTRNRLNMRKF-NKRGTSRKKILRVERQERAAEDEAEFLAKIF 294
            L+ +++AF+A ++   APA +  R+T S     L +CR N+KKEKR RNR NMRKF  KRG SRK++++  +     E E EF+AK+F
Sbjct:   25 LILAAIAFLATLSEAFAPAVSFNRATTS-----LEACRTNSKKEKRVRNRENMRKFAKKRGPSRKRMMKKVQSNAQREIENEFVAKLF 107
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8011.16182.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
Uncharacterized1.750e-6298.23protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV45... [more]
Uncharacterized4.950e-1048.91protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized1.010e-949.43protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical5.110e-862.50protein n=1 Tax=Pseudictyota dubia TaxID=2749911 R... [more]
Hypothetical8.330e-852.27protein n=1 Tax=Helicotheca tamesis TaxID=374047 R... [more]
Hypothetical1.690e-752.33protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical1.770e-763.16protein n=1 Tax=Trieres chinensis TaxID=1514140 Re... [more]
Hypothetical3.760e-756.06protein n=1 Tax=Cyclophora tenuis TaxID=216820 Rep... [more]
Hypothetical6.990e-748.31protein n=1 Tax=Odontella aurita TaxID=265563 RepI... [more]
Hypothetical2.410e-645.45protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8011contigE_fasciculatus_S2_contig8011:2488..5404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score198.4
Seed ortholog evalue1.9e-48
Seed eggNOG ortholog2880.D7FV45
Model size342
Hectar predicted targeting categorychloroplast
Exons4
EggNOG OGs2E66M@1,2SCXT@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_005120.1
Cds size342
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842463.762055-CDS-E_fasciculatus_S2_contig8011:2487..26191696842463.762055-CDS-E_fasciculatus_S2_contig8011:2487..2619Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8011 2488..2619 -
1696842463.7808304-CDS-E_fasciculatus_S2_contig8011:3408..34501696842463.7808304-CDS-E_fasciculatus_S2_contig8011:3408..3450Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8011 3409..3450 -
1696842463.792349-CDS-E_fasciculatus_S2_contig8011:4709..47591696842463.792349-CDS-E_fasciculatus_S2_contig8011:4709..4759Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8011 4710..4759 -
1696842463.8097959-CDS-E_fasciculatus_S2_contig8011:5286..54041696842463.8097959-CDS-E_fasciculatus_S2_contig8011:5286..5404Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8011 5287..5404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8011.16182.1prot_E_fasciculatus_S2_contig8011.16182.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8011 2488..5404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8011.16182.1

>prot_E_fasciculatus_S2_contig8011.16182.1 ID=prot_E_fasciculatus_S2_contig8011.16182.1|Name=mRNA_E_fasciculatus_S2_contig8011.16182.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=114bp
MAFKQLLALACLVASSLAFVAPMTTLRAPATTSARSTASARGGALMSCRV
NAKKEKRTRNRLNMRKFNKRGTSRKKILRVERQERAAEDEAEFLAKIFHS
GMDDWEEVDIFSE*
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mRNA from alignment at E_fasciculatus_S2_contig8011:2488..5404-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8011.16182.1 ID=mRNA_E_fasciculatus_S2_contig8011.16182.1|Name=mRNA_E_fasciculatus_S2_contig8011.16182.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2917bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8011:2488..5404- (Ectocarpus fasciculatus EfasUO2)
ATGGCGTTCAAGCAACTCCTAGCACTGGCGTGCCTCGTGGCCAGCTCGTT
GGCCTTCGTAGCGCCGATGACGACCCTGCGGGCTCCTGCAACGACCTCCG
CGCGAAGCACCGCCTCAGGTACGAAGCAGCAGCCGGTAGTCATCAGCAGG
CAGGCCCAACTCGCTCGCCCTCGAGGGTGGAAAGGTGGCGAAGGTCAGCG
TAGAGACCCGCGTGCGTAGGGTGTAGTTGTCCGGTCGCTCGGTGAGTGCG
GGCGTCTGTTGGTGGAGCTGGCATACGGTGTTGTATCAGCAGCGCACACG
CGTGTTGTGTTGACTTTGCGGGCCAAGCTCTTCTCCCCCTCTCATGTTTG
CTGGTATGGTTTCATGTTGAGTTTTCGTGAGTGCGCACCAGTCCGCTGCG
TTTATCGTGATAGGGCCGCACGGGCGTGGTGATGAAGAGGTGAAGCTCGC
CTCATGCCGACAGTTTGGGCTTGCGAAGCTCCTTGCTGAGTTAGTTCAAT
CACCTGGAAATGCGCCAACCTTCTCTCTCCTCCTCCTGTGCTGCTGCTGC
TGTGCTGGCGGTTTGTTGATGCCCTCTTGCGTGTTGCACGCACGTTTCGC
GTCATTCGCGTGTGGTGGGATTCATTCATCGGTGGGGACGAGCAGCTCGG
GGTGGTGCACTCATGTCTTGCAGGGTGAACGCGAAGAAGGAGAAGGTGTG
TACCTTGTCGTGCCCAACACTGATGTGTCAATTGTGCCTTGTTGGTTTGT
GTGGTGAATTCCAACTGCTGTACATGACGAGACTTGAGCTAAACACGTGC
TGCTACATGATAAGACTTACCTCGGCAACGGACGTTGGGAAACGCTGCTG
AGCGACGAGCTTGACCTCCACGAGAGGCTCTTCTCTAGCTATAAGAATGT
GTATTAGGAGGAGATATTTGTCTCTGGTACGTGCCCCGCTCCATCTTGGT
TGCTTTTCCACGGCAGCAGGAGTTGGTCTGCTGCTGTCCTCTGGTTGTGT
TGAAGAACCGCCTGGTCTGGTTGGGAGTTGAGCGCAGCCTAAAACTCAAG
GGCAACGATGCATACTACAACCAGCATTGACGTAGCCCCCGTGCTCGCTA
TCGTTAGTTTCTTGTCAGGTTCATTGGTTGGTCTGAAGCATATGGTATGG
ATGTCACCGCGAGAGAGGACCGATGCACTGCTCCTCGTGGAAATTCTAGG
GTCAAACTTGGACAGATATCACGCACACAGCAACCCCCTTCTGCCTGCTT
GCGACCGCCGATTTCGGCATGGCTCTCACCTTCTCACCCCACACTTCCTT
CTCTTGACCGTGGTACCGATGTCGTGGCCATTGGTAGAGTACGTACGACT
CTCGCAGTTGAGCGAAAGCATGTTTGAAAGCAGGTGGCAACGAATAACTT
GCTGGTGTAGTCGGCCAACCCTAACCTTGTGGTGCATGATGCAATGCACG
TGATGAGGGCCTCTTTTCAACAGCTACGGCTAAATATGGCGATCCAAATT
GCCTCCAATGGAGCGATCTAACCGATGTGGCACGACCGAAGTACATGCAT
ATTGGCTGCGGGGAAGAAGTCAAGTGGCAAGTTTTTCGTGCTGAAGTGAC
CCTGCCGGAACTCCAAAATGCATACGTTCCTCCAAATCCCCGAGTGTAGA
CCAGAACCCAATCGGCTGCCCCCTGAAAGTCGCACTCTGTCGAATACCCC
GTTGTGGTTGTGTTCATAATGAAAACCGTTCCGGTTTCTGCTCCGAACCT
TGTAATATCCATACCGGTCCGACTGACACGGACACCTTCTGGTGGTTACA
GGATAACTGCCCGAAAAGATACCGTACGCCTTGTTGTTTCTTGTCCAAGT
TTATAAATCCAGAGCTTGTTTTTCCCAATCGCCAGCGGCCGCCTGACCTT
TGCGCCTCCTCCCTTCTGATCCGGCGATGGTGCGCTTGCGTGTGTTGCGA
GCAGAGGACGCGTAACCGACTGAACATGCGCAAGTTCAACAAGAGGGTGA
GTGCGAGCGACATCCGTCCTTCCGATGTGACAAAGTGGCAGCGATGTAGT
ACAATACCGTTTCGCATCCTCGTATCTGGGCCCTGGTGTCTTTTTGACAC
AGCCGCCGAGACTTGTTGATCGAGGCAATGCCGGACTCTCTTGGCCCTTG
CCGCTCGACTTGTCAGTTACGTCGCCATCTGCTGCTCGCTGTGCCACATT
CACGACGTATCACCGTTTCATAGTTGTAGACGGGAGTGTCTGCAGCGAGC
AACCCGTACTCAGTATTGTAGGTATCTGTTCTTGTCGTCGCGCTGGTTCG
TCAGCAGCGCTGTTCCTTTCATGCACTTCTGCGATAGACGGCGGTAGTCC
GGGGAAATTTTAATCTTTGTTTCCACGCGCAGCCGCAAAGAACGACCTCT
GGTCATATGTCGGTAAGTTTAGTAGGGGCTCGAAAACTTATTCGCCTTTT
TATCGGTCGCGATTGTAGAGGTTGGTTCGTTGGGGGGCTTCTATGTACCT
CAGTTGAATCCTGGCTCTCCGCGGAGTGTCGTTGGTTCGGCAGGCATGAT
CGTATCACTGCGTTTCGCCCCCCCCCCCCGCCCCACTACTCCGTCGAAAA
TTGTTCATGGCATCTTGTGCTGTATCGTTGTTGTTGTCATCCGTGTGTTG
CATGGTTTCCTCCTTGTTGATCTGATAGCATGCATCCGTGCGACCTTCTT
GGGGAGATCGCTCCCGCTTCGTAAACTCAGGCCAACAAGTACCCTCCGCC
TCCACTGATTTCTCACACGCCAATCAAAATCACAGGGTACCTCCAGAAAG
AAAATCCTGCGCGTTGAGCGCCAGGAGCGCGCGGCGGAGGACGAGGCAGA
GTTCCTCGCCAAGATCTTCCACTCTGGCATGGACGACTGGGAGGAGGTGG
ACATCTTCAGCGAGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8011:2488..5404-

>mRNA_E_fasciculatus_S2_contig8011.16182.1 ID=mRNA_E_fasciculatus_S2_contig8011.16182.1|Name=mRNA_E_fasciculatus_S2_contig8011.16182.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=342bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8011:2488..5404- (Ectocarpus fasciculatus EfasUO2)
ATGGCGTTCAAGCAACTCCTAGCACTGGCGTGCCTCGTGGCCAGCTCGTT
GGCCTTCGTAGCGCCGATGACGACCCTGCGGGCTCCTGCAACGACCTCCG
CGCGAAGCACCGCCTCAGCTCGGGGTGGTGCACTCATGTCTTGCAGGGTG
AACGCGAAGAAGGAGAAGAGGACGCGTAACCGACTGAACATGCGCAAGTT
CAACAAGAGGGGTACCTCCAGAAAGAAAATCCTGCGCGTTGAGCGCCAGG
AGCGCGCGGCGGAGGACGAGGCAGAGTTCCTCGCCAAGATCTTCCACTCT
GGCATGGACGACTGGGAGGAGGTGGACATCTTCAGCGAGTAG
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