mRNA_E_fasciculatus_S2_contig8004.16175.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8004.16175.1
Unique NamemRNA_E_fasciculatus_S2_contig8004.16175.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8004.16175.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG7_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.330e-32
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 1
Query:    1 KDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNVIKASTT 195
            KDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATN+IK + T
Sbjct:  222 KDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNLIKVAAT 286          
BLAST of mRNA_E_fasciculatus_S2_contig8004.16175.1 vs.
Match: Protochlorophyllide (reductase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3UQ39_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.730e-20
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 1
Query:    1 KDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNVIK 183
            KDSKLCNVLFT E QRRL    + +KV+CFSPGLI  +GLFR+QNPIF+K+FD AATN++K
Sbjct:  147 KDSKLCNVLFTRELQRRLDKDGTGIKVNCFSPGLIVGTGLFRDQNPIFTKVFDIAATNLLK 207          
BLAST of mRNA_E_fasciculatus_S2_contig8004.16175.1 vs.
Match: Hypothetical (protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VW05_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 6.820e-20
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    1 KDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNVIKASTTR 198
            KDSKLCNV FT E QRRL+  +S + V+CF+PGLI SSGLFR Q  +F+K+FD AATNV+K   ++
Sbjct:   18 KDSKLCNVFFTRELQRRLAGAKSEITVNCFTPGLIVSSGLFREQPKLFTKVFDVAATNVLKVGESQ 83          
BLAST of mRNA_E_fasciculatus_S2_contig8004.16175.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW84_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.810e-19
Identity = 44/66 (66.67%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 KDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNVIKASTTR 198
            KDSKLCNVLFT E QRRL A  S V V+CFSPGLIPS+GLFRNQNP+F+K FD A +    A+T  
Sbjct:  284 KDSKLCNVLFTEECQRRLDANGSKVTVNCFSPGLIPSTGLFRNQNPLFTKAFDIATSAAGVATTAE 349          
BLAST of mRNA_E_fasciculatus_S2_contig8004.16175.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M8I2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.580e-19
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 1
Query:    1 KDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNVIK 183
            KDSKLCNVLFT E QRRL A    +K +CF+PGLI  +GLFR+QNP+F+K+FDFAAT+++K
Sbjct:  295 KDSKLCNVLFTRELQRRLDASGVGIKANCFNPGLIVGTGLFRDQNPLFTKVFDFAATDLLK 355          
BLAST of mRNA_E_fasciculatus_S2_contig8004.16175.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C919_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.480e-19
Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    1 KDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNVIKASTT 195
            KDSKLCNVLFT E  RRL+ + S V V+CFSPGLIP+SGLFR+QNP+F K+F FAA +V+  + T
Sbjct:  236 KDSKLCNVLFTRELNRRLTKKDSKVHVNCFSPGLIPTSGLFRSQNPLFVKVFGFAAGSVLGIAAT 300          
BLAST of mRNA_E_fasciculatus_S2_contig8004.16175.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HIS0_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 5.020e-19
Identity = 40/61 (65.57%), Postives = 50/61 (81.97%), Query Frame = 1
Query:    1 KDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNVIK 183
            KDSKLCNVLFT E QRR+    + + V+CFSPGLI  +GLFR+QNPIF+K+FD AATN++K
Sbjct:  299 KDSKLCNVLFTRELQRRMDKAGTGINVNCFSPGLIVGTGLFRDQNPIFTKVFDIAATNLLK 359          
BLAST of mRNA_E_fasciculatus_S2_contig8004.16175.1 vs.
Match: Protochlorophyllide (reductase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R3H0_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.550e-18
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1
Query:    1 KDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAAT 171
            KDSKLCNVLFT E Q RL A +S V V+CFSPGLI S+GLFR+QN IF+K+FDFAAT
Sbjct:  301 KDSKLCNVLFTRELQHRLEAAKSRVTVNCFSPGLIVSTGLFRDQNQIFTKLFDFAAT 357          
BLAST of mRNA_E_fasciculatus_S2_contig8004.16175.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEH4_THAPS)

HSP 1 Score: 85.9 bits (211), Expect = 4.620e-18
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 KDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNVIKASTT 195
            KDSKLCNVLFT E QRRL    S VKV+CF+PGLI  +GLFR+QN +F+K+FD AAT++ K   T
Sbjct:  293 KDSKLCNVLFTRELQRRLKESGSNVKVNCFNPGLIVGTGLFRDQNQVFTKVFDVAATSLFKVGET 357          
BLAST of mRNA_E_fasciculatus_S2_contig8004.16175.1 vs.
Match: Protochlorophyllide (reductase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQ94_FISSO)

HSP 1 Score: 85.5 bits (210), Expect = 5.120e-18
Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    1 KDSKLCNVLFTLEAQRRL--SARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNVIKASTT 195
            KDSKLCNVLFT E QRRL  +A    + V+CF+PGLI  +GLFR+QNPIF+K+FDFAAT++ K   T
Sbjct:  252 KDSKLCNVLFTRELQRRLEMNAITKGITVNCFNPGLIVGTGLFRDQNPIFTKVFDFAATDLFKVGET 318          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8004.16175.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Protochlorophyllide1.330e-3293.85reductase n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Protochlorophyllide1.730e-2068.85reductase n=2 Tax=Ditylum brightwellii TaxID=49249... [more]
Hypothetical6.820e-2060.61protein n=1 Tax=Grammatophora oceanica TaxID=21045... [more]
Protochlorophyllide1.810e-1966.67reductase n=1 Tax=Fibrocapsa japonica TaxID=94617 ... [more]
Protochlorophyllide3.580e-1965.57reductase n=1 Tax=Odontella aurita TaxID=265563 Re... [more]
Protochlorophyllide4.480e-1964.62reductase n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
Protochlorophyllide5.020e-1965.57reductase n=1 Tax=Helicotheca tamesis TaxID=374047... [more]
Protochlorophyllide1.550e-1873.68reductase (Fragment) n=1 Tax=Eucampia antarctica T... [more]
Protochlorophyllide4.620e-1863.08reductase n=1 Tax=Thalassiosira pseudonana TaxID=3... [more]
Protochlorophyllide5.120e-1862.69reductase n=2 Tax=Fistulifera solaris TaxID=151956... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8004contigE_fasciculatus_S2_contig8004:6138..6347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score125.9
Seed ortholog evalue7.2e-27
Seed eggNOG ortholog2880.D7FVG7
Model size210
KEGG rclassRC01008
KEGG koko:K00218
KEGG ReactionR03845,R06286
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG1208@2759
EC1.3.1.33
Cds size210
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842462.7504797-CDS-E_fasciculatus_S2_contig8004:6137..63471696842462.7504797-CDS-E_fasciculatus_S2_contig8004:6137..6347Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8004 6138..6347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8004.16175.1prot_E_fasciculatus_S2_contig8004.16175.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8004 6138..6347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8004.16175.1

>prot_E_fasciculatus_S2_contig8004.16175.1 ID=prot_E_fasciculatus_S2_contig8004.16175.1|Name=mRNA_E_fasciculatus_S2_contig8004.16175.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=70bp
KDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSK
IFDFAATNVIKASTTRVHV*
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mRNA from alignment at E_fasciculatus_S2_contig8004:6138..6347-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8004.16175.1 ID=mRNA_E_fasciculatus_S2_contig8004.16175.1|Name=mRNA_E_fasciculatus_S2_contig8004.16175.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=210bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8004:6138..6347- (Ectocarpus fasciculatus EfasUO2)
AAGGACTCGAAGCTCTGCAACGTCTTGTTCACGCTGGAGGCGCAGCGTCG GCTGTCCGCGAGACGGTCCGCAGTTAAGGTGGACTGCTTCTCTCCGGGGC TGATCCCCAGCAGCGGACTCTTCCGCAATCAGAACCCGATCTTCTCCAAG ATCTTCGACTTCGCGGCCACCAACGTCATCAAGGCGAGCACCACGCGCGT TCATGTATAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8004:6138..6347-

>mRNA_E_fasciculatus_S2_contig8004.16175.1 ID=mRNA_E_fasciculatus_S2_contig8004.16175.1|Name=mRNA_E_fasciculatus_S2_contig8004.16175.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=210bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8004:6138..6347- (Ectocarpus fasciculatus EfasUO2)
AAGGACTCGAAGCTCTGCAACGTCTTGTTCACGCTGGAGGCGCAGCGTCG
GCTGTCCGCGAGACGGTCCGCAGTTAAGGTGGACTGCTTCTCTCCGGGGC
TGATCCCCAGCAGCGGACTCTTCCGCAATCAGAACCCGATCTTCTCCAAG
ATCTTCGACTTCGCGGCCACCAACGTCATCAAGGCGAGCACCACGCGCGT
TCATGTATAG
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