mRNA_E_fasciculatus_S2_contig8003.16173.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8003.16173.1 vs.
Match: LNR (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI5_9PHAE) HSP 1 Score: 260 bits (665), Expect = 3.400e-80 Identity = 168/217 (77.42%), Postives = 177/217 (81.57%), Query Frame = 1
Query: 55 MFFSRRTALMVVVAATALLAPDNVRVFAATTDQDTTGTTGTTTSXEPTGTXXXVXXXSMEPTSTTSTGTXXXXXXXXXXXXXXX----VQEDDEPGGSYEDCDFSFAGDGFCHEDLNTEVCGYDGGDCCSCTCEPGDFNCGGQYNCIDPDAECVEDDDGDGGTLTTADLEDDGITDEMADDARTGDDDASASGATSFSSIVTGVATAAGAAAVISAY 693
MFFSRRTAL VVVAATALLAPD+V + A TTDQDTTGTT T TS EP XXX XXX XXXXXXXXXXXXX ++EDDEPGGSYEDCDFSFAGDG CHEDLNTEVCGYDGGDCCSCTCEPG FNCGG YNCIDP+A CVEDDD DGG +TTA+LEDDGITDEMADDART DDD SASG TSFSSIVTG+ATAAGAA V +AY
Sbjct: 1 MFFSRRTALSVVVAATALLAPDHVSLAATTTDQDTTGTTVTATSMEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPTTSTLEEDDEPGGSYEDCDFSFAGDGKCHEDLNTEVCGYDGGDCCSCTCEPGAFNCGGDYNCIDPEAVCVEDDDEDGGEMTTAELEDDGITDEMADDARTADDDTSASGTTSFSSIVTGIATAAGAAYVFAAY 217
BLAST of mRNA_E_fasciculatus_S2_contig8003.16173.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G397_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 1.940e-12 Identity = 32/41 (78.05%), Postives = 32/41 (78.05%), Query Frame = 2
Query: 2 GEHLPGDRTSAPQITTV*CSSLDEQR*WSWWQQPRFSHPTT 124
GE LP R S PQITT CSSLDEQR WSWWQQP FSHPTT
Sbjct: 98 GERLPDSRISVPQITTASCSSLDEQRCWSWWQQPHFSHPTT 138
BLAST of mRNA_E_fasciculatus_S2_contig8003.16173.1 vs.
Match: LNR (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L262_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 2.710e-11 Identity = 36/58 (62.07%), Postives = 39/58 (67.24%), Query Frame = 1
Query: 349 DFSFAGDGFCHEDLNTEVCGYDGGDCCSCTC-EPGDFNCG-GQYNCIDPDAECVEDDD 516
D S GDG C D+N CGYDGGDCC CTC G++ CG G Y CIDP AECV DDD
Sbjct: 43 DESAVGDGNCDRDINFAECGYDGGDCCECTCVAEGEYECGAGGYACIDPAAECVNDDD 100
BLAST of mRNA_E_fasciculatus_S2_contig8003.16173.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI) HSP 1 Score: 72.0 bits (175), Expect = 3.180e-10 Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 1
Query: 313 EDDEPGGSYEDCDFSFAGDGFCHEDLNTEVCGYDGGDCCSCTCE---PGDFNCGGQYNCIDPDAECVEDDD 516
+DD G +EDC F+F GDGFC++ N E CGYDGGDCC CTC +F C ++ CIDP A CV+DDD
Sbjct: 48 DDDVTEGMFEDC-FNF-GDGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCT-EFACIDPTAPCVDDDD 115
BLAST of mRNA_E_fasciculatus_S2_contig8003.16173.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 4.820e-10 Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query: 307 VQEDDEPGGSYEDCDFSFA-GDGFCHEDLNTEVCGYDGGDCCSCTCE---------PGDFNCGGQYNCIDPDAECVEDDD 516
V +DD +E+CD++ + GDG+C E N E CGYDGGDCC CTCE D++C +++CIDP+A CV DDD
Sbjct: 80 VDDDDITVDMFENCDYALSVGDGWCDEGNNNEACGYDGGDCCECTCEYESPYDWDDDWDYHCR-EFSCIDPNAACVSDDD 158
BLAST of mRNA_E_fasciculatus_S2_contig8003.16173.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 8.730e-10 Identity = 37/75 (49.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query: 307 VQEDDEPGGSYEDCDFSFAGDGFCHEDLNTEVCGYDGGDCCSCTC-----EPGDFNCGGQYNCIDPDAECVEDDD 516
V +DD ++CD GDG+C +D N E+CGYDGGDCC CTC + D+ C CIDPDA CV+DDD
Sbjct: 60 VDDDDITVEIAQNCDTWGLGDGWCDQDNNNEICGYDGGDCCECTCVSPWDDDDDWACRNYNACIDPDAPCVDDDD 134
BLAST of mRNA_E_fasciculatus_S2_contig8003.16173.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 1.390e-9 Identity = 39/84 (46.43%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 307 VQEDDEPGGSYEDCDFSFA-GDGFCHEDLNTEVCGYDGGDCCSCTC--EPGDFN------------CGGQYNCIDPDAECVEDD 513
V++DD E+C + GDG+CHE+ N E+CGYDGGDCC CTC P D + CGG + CIDP A CV+DD
Sbjct: 121 VEDDDITADMVENCGYVRGLGDGWCHEENNNELCGYDGGDCCECTCVAPPADDDWXXXXXXXXYGACGGGFACIDPSAACVDDD 204
BLAST of mRNA_E_fasciculatus_S2_contig8003.16173.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 1.900e-9 Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 1
Query: 313 EDDEPGGSYEDCDFSFAGDGFCHEDLNTEVCGYDGGDCCSCTCE---PGDFNCGGQYNCIDPDAECVEDDD 516
+DD G +EDC F+F GDGFC++ N E CGYDGGDCC CTC +F C ++ CIDP A CV+DDD
Sbjct: 197 DDDVTEGMFEDC-FNF-GDGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCT-EFACIDPTAPCVDDDD 264
BLAST of mRNA_E_fasciculatus_S2_contig8003.16173.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI) HSP 1 Score: 69.7 bits (169), Expect = 2.490e-9 Identity = 37/81 (45.68%), Postives = 47/81 (58.02%), Query Frame = 1
Query: 307 VQEDDEPGGSYEDCDF-SFAGDGFCHEDLNTEVCGYDGGDCCSCTCEPGDFN----------CGGQYNCIDPDAECVEDDD 516
V +DD E+C + G+G+C E+ N E CGYDGGDCC CTC+P D + CG + CIDP+A CV DDD
Sbjct: 111 VDDDDVTVDMVENCGYVGSVGNGWCDEENNNEGCGYDGGDCCECTCQPLDTDDGTDDYFQNGCGNGFACIDPNAPCVNDDD 191
BLAST of mRNA_E_fasciculatus_S2_contig8003.16173.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 5.120e-9 Identity = 36/68 (52.94%), Postives = 43/68 (63.24%), Query Frame = 1
Query: 340 EDCDFSFAGDGFCHEDLNTEVCGYDGGDCCSCTCE-PGDFN--------CGGQYNCIDPDAECVEDDD 516
++CDF GDG+C + N E+CGYDGGDCC CTCE P D + CG + CIDP A CV DDD
Sbjct: 102 QECDFWDLGDGWCDQVNNNELCGYDGGDCCECTCEVPTDDDWDNDLYVACGEGFACIDPSAPCVNDDD 169 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8003.16173.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8003.16173.1 >prot_E_fasciculatus_S2_contig8003.16173.1 ID=prot_E_fasciculatus_S2_contig8003.16173.1|Name=mRNA_E_fasciculatus_S2_contig8003.16173.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=217bp MMFFSRRTALMVVVAATALLAPDNVRVFAATTDQDTTGTTGTTTSTEPTGback to top mRNA from alignment at E_fasciculatus_S2_contig8003:455..3608- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8003.16173.1 ID=mRNA_E_fasciculatus_S2_contig8003.16173.1|Name=mRNA_E_fasciculatus_S2_contig8003.16173.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3154bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8003:455..3608- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8003:455..3608- >mRNA_E_fasciculatus_S2_contig8003.16173.1 ID=mRNA_E_fasciculatus_S2_contig8003.16173.1|Name=mRNA_E_fasciculatus_S2_contig8003.16173.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=651bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8003:455..3608- (Ectocarpus fasciculatus EfasUO2)back to top |