mRNA_E_fasciculatus_S2_contig8000.16172.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8000.16172.1
Unique NamemRNA_E_fasciculatus_S2_contig8000.16172.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8000.16172.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL5_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.490e-28
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 TIGLSWGDESSLLPAVRRAQVELGCTAAKRSRLERVVSWVMANRVPARGDDVSVEERRADCLL 189
            TIGLSWG+ESSL PAVRRAQ ELGCTAAKRSRLE V SW++ANR PARGDDVSVEERRA CLL
Sbjct:  253 TIGLSWGEESSLFPAVRRAQTELGCTAAKRSRLECVASWILANRAPARGDDVSVEERRAACLL 315
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BLAST of mRNA_E_fasciculatus_S2_contig8000.16172.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 6.500e-27
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 TIGLSWGDESSLLPAVRRAQVELGCTAAKRSRLERVVSWVMANRVPARGDDVSVEERRADCLL 189
            TI LSWG+ESSLLPAVRRAQ ELGCTAAKRSRLE V SW++ANRVPARGDDVSVEERRA C L
Sbjct:  322 TIWLSWGEESSLLPAVRRAQTELGCTAAKRSRLECVASWIVANRVPARGDDVSVEERRAACFL 384
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8000.16172.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.490e-2885.71protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.500e-2785.71protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8000contigE_fasciculatus_S2_contig8000:35..250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size218
Hectar predicted targeting categoryother localisation
Exons1
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842462.5727959-CDS-E_fasciculatus_S2_contig8000:34..2501696842462.5727959-CDS-E_fasciculatus_S2_contig8000:34..250Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8000 35..250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8000.16172.1prot_E_fasciculatus_S2_contig8000.16172.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8000 35..250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8000.16172.1

>prot_E_fasciculatus_S2_contig8000.16172.1 ID=prot_E_fasciculatus_S2_contig8000.16172.1|Name=mRNA_E_fasciculatus_S2_contig8000.16172.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=72bp
TIGLSWGDESSLLPAVRRAQVELGCTAAKRSRLERVVSWVMANRVPARGD
DVSVEERRADCLLRRRRSWSR*
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mRNA from alignment at E_fasciculatus_S2_contig8000:35..250+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8000.16172.1 ID=mRNA_E_fasciculatus_S2_contig8000.16172.1|Name=mRNA_E_fasciculatus_S2_contig8000.16172.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=216bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8000:35..250+ (Ectocarpus fasciculatus EfasUO2)
ACGATTGGTCTTTCATGGGGGGACGAGTCTTCGTTGCTTCCTGCGGTGAG
ACGGGCGCAGGTGGAGCTTGGTTGCACGGCTGCCAAGAGAAGCCGACTGG
AACGCGTAGTCTCGTGGGTTATGGCCAACAGAGTACCCGCCCGTGGCGAT
GATGTCTCTGTGGAAGAACGCAGAGCGGACTGTCTTCTCCGAAGACGCCG
GAGTTGGAGCAGATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8000:35..250+

>mRNA_E_fasciculatus_S2_contig8000.16172.1 ID=mRNA_E_fasciculatus_S2_contig8000.16172.1|Name=mRNA_E_fasciculatus_S2_contig8000.16172.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=216bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8000:35..250+ (Ectocarpus fasciculatus EfasUO2)
ACGATTGGTCTTTCATGGGGGGACGAGTCTTCGTTGCTTCCTGCGGTGAG
ACGGGCGCAGGTGGAGCTTGGTTGCACGGCTGCCAAGAGAAGCCGACTGG
AACGCGTAGTCTCGTGGGTTATGGCCAACAGAGTACCCGCCCGTGGCGAT
GATGTCTCTGTGGAAGAACGCAGAGCGGACTGTCTTCTCCGAAGACGCCG
GAGTTGGAGCAGATGA
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