mRNA_E_fasciculatus_S2_contig800.16168.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig800.16168.1
Unique NamemRNA_E_fasciculatus_S2_contig800.16168.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig800.16168.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX4_ECTSI)

HSP 1 Score: 424 bits (1089), Expect = 8.130e-147
Identity = 215/253 (84.98%), Postives = 224/253 (88.54%), Query Frame = 1 
Query:    1 RFSRVSAEIRRLVEHIQTSDTPLRNVANPGRDLIHIPSFSWQYLGRNVRPLMESLCWILAAMTAGLHEAIARLQPRNAWDNSISSVRPGATGAFGEGQQPQISPTPPPSAATRDVRITVGFVMERWGNRSPHRLIQGVLEGMDRSRFRLVVFSRDYTGYYCEAGKALLEAADEVKIFPWHPFAEGLADPFADRGVIASI--VFGHGHPVTSGSPGIDYFVSSDLFETTAS-IDARELRRIAGTPSDLQVATIV 750
            RFSRVSAE RRLVEHIQTSD PLRNV NPGRDLIHIPSFSW YLGRN+RPLMESLCWILAAMT GLHEAIARLQPRNAWDNS SS R G  GAFGEG+QPQIS TPPPS AT+DVRITVGFVMERWGNRSPHRLIQGVLEGMDRSRFRLVVFS+DYTGYYCEAGKALLEAA+EVKIFPWHPFAEGL DPFADRGVIAS+  VFGHGHPVTSGSPGIDYFVSSDLFETTA  +   EL    G   +L VA+ V
Sbjct:    3 RFSRVSAETRRLVEHIQTSDAPLRNVPNPGRDLIHIPSFSWPYLGRNMRPLMESLCWILAAMTVGLHEAIARLQPRNAWDNSTSSGRQGTRGAFGEGEQPQISLTPPPSIATKDVRITVGFVMERWGNRSPHRLIQGVLEGMDRSRFRLVVFSQDYTGYYCEAGKALLEAAEEVKIFPWHPFAEGLTDPFADRGVIASVQVVFGHGHPVTSGSPGIDYFVSSDLFETTAHFVQVAEL----GVGEELLVASDV 251
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BLAST of mRNA_E_fasciculatus_S2_contig800.16168.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ47_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 9.660e-76
Identity = 132/219 (60.27%), Postives = 146/219 (66.67%), Query Frame = 1 
Query:  142 VRPLMESLCWILAAMTAGLHEAIARLQPRNAWDNSISSVRPGATGAFGEGQQPQISPTPPPSAATRDVRITVGFVMERWGNRSPHRLIQGVLEGMDRSRFRLVVFSRDYTGYYCEAGKALLEAADEVKIFPWHPFAEGLADPFADRGVIASI-----------------------------VFGHGHPVTSGSPGIDYFVSSDLFETTASIDARELRRI 711
            +RPLMESLCWILAA+  GLHEAIA+LQPR AW           T +  E ++ +             VRITVGFVMERWGNRSPH LIQ +LE +DRSRFRLVVFSRDYT  YCEAG+AL EAA+EVKIFPWHPF EGL DPFADRGVIAS+                             VFGHGH VTSGSPGID FVSSDL+ETTASIDAREL  +
Sbjct:    1 MRPLMESLCWILAALMVGLHEAIAQLQPRKAW----------TTASLLEDKERR-----------GRVRITVGFVMERWGNRSPHHLIQRILESVDRSRFRLVVFSRDYTDCYCEAGQALPEAAEEVKIFPWHPFVEGLTDPFADRGVIASVQVDVLLSAALGNTLWSHLLALGRLAPVQVVFGHGHSVTSGSPGIDCFVSSDLYETTASIDARELAEL 198
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BLAST of mRNA_E_fasciculatus_S2_contig800.16168.1 vs.
Match: Glyco_transf_41 (domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TCF2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.250e-6
Identity = 47/147 (31.97%), Postives = 71/147 (48.30%), Query Frame = 1 
Query:  316 PPPSAATRDVRITVGFVMERWGNRSPHRLIQGVLEGMDRSRFRLVVFSRDY--------TGYYCEA-GKALLEAADEVKIFP------WHPFAEGLADP--FADRGVIASIVF-GH-----------GHPVTSGSPGIDYFVSSDLF 669
            PPP   TR  +I VGFV   +   S  +LIQ V+E +DR++F +VV +  +        T    +A  +A+ EAAD   + P       H   +   D   + + G+ A + F  H           GHP+T+G P IDYF++S+ F
Sbjct:  533 PPPPLDTRQTKIKVGFVSSWFRVHSVGKLIQRVIETIDRNQFHVVVLAATHFFPHDTVATSTTTDAITRAIQEAADAFVVLPASQDMAMHMILQEALDVLVYPEIGMDAWMYFLAHRRLAPIQCMFWGHPITTGLPSIDYFIASEFF 679
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig800.16168.1 vs.
Match: Glyco_transf_41 (domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TB82_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.630e-6
Identity = 47/147 (31.97%), Postives = 71/147 (48.30%), Query Frame = 1 
Query:  316 PPPSAATRDVRITVGFVMERWGNRSPHRLIQGVLEGMDRSRFRLVVFSRDY--------TGYYCEA-GKALLEAADEVKIFP------WHPFAEGLADP--FADRGVIASIVF-GH-----------GHPVTSGSPGIDYFVSSDLF 669
            PPP   TR  +I VGFV   +   S  +LIQ V+E +DR++F +VV +  +        T    +A  +A+ EAAD   + P       H   +   D   + + G+ A + F  H           GHP+T+G P IDYF++S+ F
Sbjct:  533 PPPPLDTRQTKIKVGFVSSWFRVHSVGKLIQRVIETIDRNQFHVVVLAATHFFPHDTVATSTTTDAITRAIQEAADAFVVLPASQDMAMHMILQEALDVLVYPEIGMDAWMYFLAHRRLAPIQCMFWGHPITTGLPSIDYFIASEFF 679
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig800.16168.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized8.130e-14784.98protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.660e-7660.27protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Glyco_transf_415.250e-631.97domain-containing protein n=1 Tax=Aphanomyces inva... [more]
Glyco_transf_415.630e-631.97domain-containing protein n=2 Tax=Aphanomyces inva... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig800contigE_fasciculatus_S2_contig800:13342..14896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size924
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_006240.1
Cds size924
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842462.322821-CDS-E_fasciculatus_S2_contig800:13341..136711696842462.322821-CDS-E_fasciculatus_S2_contig800:13341..13671Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig800 13342..13671 -
1696842462.3328688-CDS-E_fasciculatus_S2_contig800:14302..148961696842462.3328688-CDS-E_fasciculatus_S2_contig800:14302..14896Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig800 14303..14896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig800.16168.1prot_E_fasciculatus_S2_contig800.16168.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig800 13342..14896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig800.16168.1

>prot_E_fasciculatus_S2_contig800.16168.1 ID=prot_E_fasciculatus_S2_contig800.16168.1|Name=mRNA_E_fasciculatus_S2_contig800.16168.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=308bp
RFSRVSAEIRRLVEHIQTSDTPLRNVANPGRDLIHIPSFSWQYLGRNVRP
LMESLCWILAAMTAGLHEAIARLQPRNAWDNSISSVRPGATGAFGEGQQP
QISPTPPPSAATRDVRITVGFVMERWGNRSPHRLIQGVLEGMDRSRFRLV
VFSRDYTGYYCEAGKALLEAADEVKIFPWHPFAEGLADPFADRGVIASIV
FGHGHPVTSGSPGIDYFVSSDLFETTASIDARELRRIAGTPSDLQVATIV
TADAGAAGCGDGDSIHSPTAGGTCRAGALLSGDGQPHHIFENLRRNRSHQ
TLAEEKRN
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mRNA from alignment at E_fasciculatus_S2_contig800:13342..14896-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig800.16168.1 ID=mRNA_E_fasciculatus_S2_contig800.16168.1|Name=mRNA_E_fasciculatus_S2_contig800.16168.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1555bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig800:13342..14896- (Ectocarpus fasciculatus EfasUO2)
AGGTTTTCGAGGGTGTCTGCCGAGATTCGACGCCTCGTGGAACACATTCA
GACGTCCGATACGCCTCTCCGCAACGTAGCCAACCCCGGGCGAGACCTGA
TACACATACCGAGTTTCTCCTGGCAGTACCTGGGGCGCAATGTGCGCCCC
CTGATGGAGAGCTTGTGCTGGATCCTTGCGGCGATGACGGCGGGGCTGCA
CGAAGCGATCGCACGACTGCAGCCACGAAACGCATGGGACAACAGCATCT
CTTCTGTAAGACCAGGAGCGACGGGGGCGTTTGGTGAAGGGCAACAGCCA
CAGATCAGCCCTACCCCGCCTCCCAGCGCAGCGACGAGAGATGTCAGAAT
CACCGTGGGATTCGTGATGGAGAGGTGGGGCAATCGCTCGCCGCACCGCC
TCATCCAGGGAGTCTTGGAGGGCATGGACCGCTCCAGGTTTCGGCTCGTG
GTGTTCTCGCGAGACTACACGGGTTACTACTGCGAGGCCGGGAAGGCTTT
GCTGGAAGCTGCCGACGAGGTCAAGATCTTCCCGTGGCACCCGTTTGCGG
AAGGCCTCGCAGACCCTTTCGCTGATCGGGGAGTCATCGCGTCGGTCCAG
GCGCGTTCTGAGAGATACAATGATACGACGTAAAGCATGATCGATGGCAC
CGAGCAGGATGACCCGCGACGCTTGAACTCTGCCTTCTTACTTGTAGCGT
TTGCTTATTTCCCGCATTCTCACGAAAGGGTAGCTTCAGTAGCACCTACA
GCCATTCACCGTTAAGCTTTTCCGTGAGTGTGGCCTTGAGCGTGGCACTT
CCAATATATCGCGTCAATCCAGGTAGATGTCCTCCTCTACGCTGCCTTGG
GAAACACGCTGTGGAGCCACTTGTTGGCGCTAGGCCGGCTGGCACCGGTA
CAGGTACGAAACGATTTTCGCGCCGGAGGAAAGAGACCTTTGAACTACGT
GGTACGCAGTACCGCCCGGCAAAGCTCCTGGCAGCCCTCAAGCGTGTGTT
GGCACTCTTTTTCAGACAAGTGCACACCTCGGAAATTTCTTTTGACGAGG
AGGACTCTGTTGTTTCCGCGGCCACGTTGTGGAAGACTTCGTCTAGGTGG
TAAGTGTAGTCGTGTGACCCCGTCCGTGGAGCTGGTGTGCTGCTGTTTCA
TCTCGTCGTGTTCCTGCTGATCCATTCCATTGCTCTCGACACTTTTTCCT
TGCCCTTCCCCGGGCTAAAACGAAGATTGTCTTCGGGCATGGCCACCCTG
TGACTTCGGGCTCTCCCGGGATAGACTACTTCGTGAGCAGCGACCTCTTT
GAGACAACCGCGAGCATCGACGCTCGAGAGCTCCGAAGAATCGCCGGCAC
CCCGAGTGACCTACAAGTGGCCACTATCGTCACCGCCGATGCTGGCGCCG
CAGGCTGTGGAGATGGTGATAGCATTCACAGCCCCACTGCAGGTGGTACT
TGCCGAGCAGGCGCACTACTCTCTGGTGACGGTCAGCCTCATCATATTTT
CGAGAACCTTCGGCGAAACAGATCTCATCAGACGCTGGCAGAAGAGAAGC
GAAAT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig800:13342..14896-

>mRNA_E_fasciculatus_S2_contig800.16168.1 ID=mRNA_E_fasciculatus_S2_contig800.16168.1|Name=mRNA_E_fasciculatus_S2_contig800.16168.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=924bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig800:13342..14896- (Ectocarpus fasciculatus EfasUO2)
AGGTTTTCGAGGGTGTCTGCCGAGATTCGACGCCTCGTGGAACACATTCA
GACGTCCGATACGCCTCTCCGCAACGTAGCCAACCCCGGGCGAGACCTGA
TACACATACCGAGTTTCTCCTGGCAGTACCTGGGGCGCAATGTGCGCCCC
CTGATGGAGAGCTTGTGCTGGATCCTTGCGGCGATGACGGCGGGGCTGCA
CGAAGCGATCGCACGACTGCAGCCACGAAACGCATGGGACAACAGCATCT
CTTCTGTAAGACCAGGAGCGACGGGGGCGTTTGGTGAAGGGCAACAGCCA
CAGATCAGCCCTACCCCGCCTCCCAGCGCAGCGACGAGAGATGTCAGAAT
CACCGTGGGATTCGTGATGGAGAGGTGGGGCAATCGCTCGCCGCACCGCC
TCATCCAGGGAGTCTTGGAGGGCATGGACCGCTCCAGGTTTCGGCTCGTG
GTGTTCTCGCGAGACTACACGGGTTACTACTGCGAGGCCGGGAAGGCTTT
GCTGGAAGCTGCCGACGAGGTCAAGATCTTCCCGTGGCACCCGTTTGCGG
AAGGCCTCGCAGACCCTTTCGCTGATCGGGGAGTCATCGCGTCGATTGTC
TTCGGGCATGGCCACCCTGTGACTTCGGGCTCTCCCGGGATAGACTACTT
CGTGAGCAGCGACCTCTTTGAGACAACCGCGAGCATCGACGCTCGAGAGC
TCCGAAGAATCGCCGGCACCCCGAGTGACCTACAAGTGGCCACTATCGTC
ACCGCCGATGCTGGCGCCGCAGGCTGTGGAGATGGTGATAGCATTCACAG
CCCCACTGCAGGTGGTACTTGCCGAGCAGGCGCACTACTCTCTGGTGACG
GTCAGCCTCATCATATTTTCGAGAACCTTCGGCGAAACAGATCTCATCAG
ACGCTGGCAGAAGAGAAGCGAAAT
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