mRNA_E_fasciculatus_S2_contig8.16147.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Match: Ubiquitin-conjugating (enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY7_ECTSI) HSP 1 Score: 575 bits (1483), Expect = 1.780e-206 Identity = 295/316 (93.35%), Postives = 298/316 (94.30%), Query Frame = 1
Query: 13 PATLALLCLVAHSSTSAAASTGHGGAPSRAFLTRGRRSSALASSQARSYNPGPTTQGQCGHREDALETRALVVRGGSDEDPSLTTLFMRVLMPGFRRDTGGDGELDLEGGGLMRRLKQLVSGVFRKVRGSPVASTESEGEAKNVTTKKKSKGKAKGAKTASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQWIYHDDLC 960
PATLA LCLVAHSSTSAAAST GGAPSRAFL GRRSSAL SS ARS NPGPTTQG+ GH EDALET ALVVRGGSDEDPSLTTLFMRVLMPGFRRD GGDGELDLEGGGLMRRLK+LVSGVFRKVRGSPV TE +GEAKNV TKKKSKGKAKGA T SHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQWIYHDDLC
Sbjct: 2 PATLAFLCLVAHSSTSAAASTCQGGAPSRAFLAHGRRSSALTSSNARSCNPGPTTQGESGHGEDALETFALVVRGGSDEDPSLTTLFMRVLMPGFRRDKGGDGELDLEGGGLMRRLKRLVSGVFRKVRGSPVPITEPKGEAKNVATKKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQWIYHDDLC 317
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Match: Ubiquitin-conjugating (enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFF1_9STRA) HSP 1 Score: 262 bits (669), Expect = 3.960e-82 Identity = 139/255 (54.51%), Postives = 178/255 (69.80%), Query Frame = 1
Query: 211 ETRALVVRGGSDEDPSLTTLFMRVLMPGFRRDTGGD---GELDLEGG--GLMRRLKQLVSGVFRKVRGSPVASTESEGEAKNVTTKKKSKGKAKGAKTASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQ-WIYHDDL 957
E R L++RGG S LFM++ +PG+ D GD G+ L GL +R+K+ +S +F + P + G+ K ++K + GK HL +RPG+ANYRIQKEL+EFM NPP+ C+VSVGK+++VWIITI+GA+GTI+ GEKF+LRV FPE YP KPP+VYFLQ PPPP+H+H+YTNGDICLSLL +DW PNLT +LALSILSMLSSAKEKR P DN +A RPGQ+Q WIYHD+
Sbjct: 123 EQRGLMLRGGGKGSLSKFQLFMQIFIPGYGEDAAGDDGDGKAALTSAQPGLAKRVKRFLSALFSGGKKQPTKGAKG-GKGKGGSSKDDTVGK--------HLASKHRPGDANYRIQKELQEFMKNPPEGCQVSVGKSLKVWIITITGAKGTIFEGEKFKLRVGFPENYPLKPPSVYFLQDPPPPEHEHVYTNGDICLSLLG-KDWTPNLTASALALSILSMLSSAKEKRRPADNFQNANRRPGQSQDSWIYHDNF 367
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Match: UBC (core domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GQN8_VITBC) HSP 1 Score: 219 bits (558), Expect = 1.330e-67 Identity = 101/156 (64.74%), Postives = 128/156 (82.05%), Query Frame = 1
Query: 496 HLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPG-QAQQWIYHDDLC 960
HL +++RPG+ NYRIQKELK+F+ PPD C+++VG NIRVWIIT++G EGT+Y GEK+RL++ FP EYP KPP +YFLQ P P+H H+Y+NGDICL+LL + DWKP LTV S+ALSILSMLSSAKEK+LP DNA+HA+ + G Q W+YHDD C
Sbjct: 54 HLRRSFRPGHVNYRIQKELKDFLTTPPDHCEIAVGSNIRVWIITLTGVEGTLYEGEKYRLKIVFPPEYPLKPPIIYFLQ--PTPRHPHVYSNGDICLNLLGT-DWKPTLTVASVALSILSMLSSAKEKKLPLDNASHADLKAGGQQHNWMYHDDKC 206
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Match: UBC (core domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GVI6_9ALVE) HSP 1 Score: 218 bits (555), Expect = 3.310e-67 Identity = 107/170 (62.94%), Postives = 132/170 (77.65%), Query Frame = 1
Query: 454 KKSKGKAKGAKTASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPG-QAQQWIYHDDLC 960
KKS GK K T++HL+ + PGN NYRIQKELKEF+ +PP C+VSVG N+R WIITI G EGT+Y E ++L+V FP+EYP PP+VYFL+ P P+H H+YTNGDICL+LL + DWKP LTV ++AL+ILSMLSSAKEK++P DNA HAEA PG Q W+YHDD C
Sbjct: 36 KKSGGKKKADATSNHLKAKWTPGNPNYRIQKELKEFIKSPPPNCRVSVGSNLRAWIITIKGVEGTLYEKETYKLKVVFPDEYPLVPPSVYFLR--PAPRHPHVYTNGDICLNLLGT-DWKPTLTVSAIALAILSMLSSAKEKKIPLDNAAHAEAPPGGQQHNWMYHDDKC 202
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Match: Ubiquitin-conjugating (enzyme n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U274_9STRA) HSP 1 Score: 219 bits (559), Expect = 2.720e-66 Identity = 117/257 (45.53%), Postives = 166/257 (64.59%), Query Frame = 1
Query: 193 HREDALETRALVVRGGSDEDPSLTTLFMRVLMPGFRRDTGGDGELDLEGGGLMRRLKQLVSGVFRKVRGSPVASTESEGEAKNVTTKKKSKGKAKGAKTASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQ-QWIYHDDLC 960
H + L T RGG+ + SL MR +R GG + R+K+ + G+ GS ++ + G+ G + HL K +R GNAN+R+QKEL+E++ANP + +V+VG NIRVW++T++GA+GTI+AGEK++L+ +FP +YP+KPP+VYFLQ PPP+H+H+YTNGDICL+LL RDW+PN+T LALSILSMLSSA+EK++P+DN HA+ PG+ Q W+YHDD C
Sbjct: 73 HPQLPLITLLAQKRGGALQSSSLLGRIMRAWRGSAKR-----------GGSIHGRIKRFL-GLLWNAAGSSAGHDVKRSTIRSGSLGGVGGGRLGGNRMQKHLGKEFRRGNANFRVQKELREWLANPTENLQVAVGDNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQ--PPPRHEHVYTNGDICLNLLG-RDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDDRC 314
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYR4_9STRA) HSP 1 Score: 214 bits (545), Expect = 3.840e-65 Identity = 105/158 (66.46%), Postives = 127/158 (80.38%), Query Frame = 1
Query: 484 KTASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQ-WIYHDD 954
K + L K + GN YRIQKEL+EF+ NPP CKVSVG NIRVW +T++GAE T+Y GE+++LRV+FP YPTKPP+VYFL+ PPPKH H+YTNGDICLSLL +DW+PNLT SLALSILSMLSSA+EKRLP DNA HA++ PG+ Q W+YHDD
Sbjct: 86 KASRQLGKRVKRGNPLYRIQKELREFVDNPPPNCKVSVGDNIRVWTVTLTGAEDTLYEGEEYKLRVTFPTGYPTKPPSVYFLK--PPPKHPHVYTNGDICLSLLG-KDWRPNLTASSLALSILSMLSSAREKRLPNDNAQHADSPPGKPQDGWMYHDD 240
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Match: Hypothetical (protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2N4_9STRA) HSP 1 Score: 202 bits (513), Expect = 8.880e-61 Identity = 103/176 (58.52%), Postives = 128/176 (72.73%), Query Frame = 1
Query: 436 KNVTTKKKSKGKAKGAKTASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQ-WIYHDDLC 960
K V KKK GK+ A H+ K + N NYRIQ+ELKEF+ +PP KV+VGKNIRVWIIT+ GA+ TIY G+KFRLRV FP +YPT PP+VYFLQ P P+H+H+YTNGDICLSLL +DW+P +T S+A+SILS+LS A+ K LP DNA + +PG Q W+YHDD C
Sbjct: 40 KPVVAKKKPAGKSA---AAVHIAKELKSNNPNYRIQRELKEFLKSPPPNLKVNVGKNIRVWIITLIGAKNTIYDGDKFRLRVQFPADYPTSPPSVYFLQ--PTPRHEHVYTNGDICLSLLG-KDWRPTMTAQSIAMSILSILSGAQRKSLPMDNARNCLNKPGAKQDDWVYHDDNC 209
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Match: Hypothetical (protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A863_9STRA) HSP 1 Score: 202 bits (514), Expect = 1.700e-59 Identity = 118/255 (46.27%), Postives = 161/255 (63.14%), Query Frame = 1
Query: 205 ALETRALVVRGGSDEDPSLTTLFMRVLMPGFRRDTGGDGELDLEGGGLMRRLKQLVSGV--FRKVRGSPVASTESEGEAKNVTTKKKSKGKAKGAKTASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQ-WIYHDDLC 960
A+ TRAL V GG++ SL L+ G GG G L G++R+ ++ + F K G + ++ K V KKK + A+ + + RI +EL +F+ NPPD CKVSVGKN+ VWI+T++GAEGTI+AGEK++LRVSFP +YPT PP+ YFL+ P P+H H+YTNGDICL+LL + W+P +TV L+LSILSMLSSAK K +P+DNA HA + PG+ Q+ W+YHDD C
Sbjct: 86 AMHTRALRVSGGANAT-SLAPEAKAGLLDG-----GGGGSLATRLFGVIRKTVRMTLRLLGFGKDGGDEDTAPATK---KKVAAKKKRRSPARASPAQRQAQ----------RISRELTDFVENPPDGCKVSVGKNLNVWIVTMTGAEGTIFAGEKYKLRVSFPADYPTSPPSCYFLE--PTPRHPHVYTNGDICLNLLGN-GWRPTITVAQLSLSILSMLSSAKTKGIPQDNAVHAASAPGKPQEGWMYHDDSC 318
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RNY0_9STRA) HSP 1 Score: 202 bits (515), Expect = 2.780e-59 Identity = 98/156 (62.82%), Postives = 120/156 (76.92%), Query Frame = 1
Query: 496 HLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQ-WIYHDDLC 960
HL + + NYRIQKEL+ F+ +PP V+VGKNIRVWI+TI+GA TIY GEK+RLR+SFP YPT PP+VYFL PP PKH+H+YTNGDICLSLL +DW+P +T SLA+SILS+LSSA+EK LP DNA H++ +PG Q WIYHDD C
Sbjct: 196 HLSAKLKSNSPNYRIQKELRAFLTSPPPNLSVAVGKNIRVWIVTITGASNTIYEGEKYRLRMSFPSNYPTSPPSVYFL--PPTPKHEHVYTNGDICLSLLG-KDWRPTMTGQSLAVSILSLLSSAREKSLPMDNAAHSQNKPGGNQDNWIYHDDNC 348
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3E3N1_9STRA) HSP 1 Score: 196 bits (498), Expect = 1.370e-58 Identity = 95/165 (57.58%), Postives = 126/165 (76.36%), Query Frame = 1
Query: 469 KAKGAKTASHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQ-WIYHDDLC 960
K+K H++K + + NYRIQ+ELK F+++PP KV VGKNIRVWI+T+SGA+ TIY GE F+LR++FP YPT PP+VYFL P P H+H+YTNGDICLSLL +DW+P +T S+A+SILS+LSSA+ K LP DNA H++ +PG+ Q+ W+YHDDLC
Sbjct: 42 KSKSTLANLHVKKELKATSPNYRIQRELKSFLSDPPPNLKVKVGKNIRVWIVTMSGAKDTIYEGETFQLRIAFPAAYPTVPPSVYFLP-PNIPLHEHVYTNGDICLSLLG-KDWRPTMTAQSIAVSILSILSSAQSKSLPMDNARHSQNKPGEYQKDWVYHDDLC 204 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8.16147.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8.16147.1 >prot_E_fasciculatus_S2_contig8.16147.1 ID=prot_E_fasciculatus_S2_contig8.16147.1|Name=mRNA_E_fasciculatus_S2_contig8.16147.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=321bp MVGVPATLALLCLVAHSSTSAAASTGHGGAPSRAFLTRGRRSSALASSQAback to top mRNA from alignment at E_fasciculatus_S2_contig8:12229..16343+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8.16147.1 ID=mRNA_E_fasciculatus_S2_contig8.16147.1|Name=mRNA_E_fasciculatus_S2_contig8.16147.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4115bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8:12229..16343+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8:12229..16343+ >mRNA_E_fasciculatus_S2_contig8.16147.1 ID=mRNA_E_fasciculatus_S2_contig8.16147.1|Name=mRNA_E_fasciculatus_S2_contig8.16147.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=963bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8:12229..16343+ (Ectocarpus fasciculatus EfasUO2)back to top |