mRNA_E_fasciculatus_S2_contig7989.16138.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7989.16138.1
Unique NamemRNA_E_fasciculatus_S2_contig7989.16138.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7989.16138.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJX7_ECTSI)

HSP 1 Score: 458 bits (1179), Expect = 7.680e-157
Identity = 311/389 (79.95%), Postives = 318/389 (81.75%), Query Frame = 1 
Query:    1 MATNSDGYKRGRSDGIPDQEDVKRVKITAGHPATLPTFGAGEVAGTTSXXXXXXXXXXXXAPTMQ------------GPWDRLNRVVLVARAMNTDGSGLSACLGLDKLRQESAARVAECQAQLQAERDAELLAEQQELFAGLHNLGVLRYAPVAHVARFQEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEEEAFLRSHLGGGAGPAXXXXXXA-RSGAGPVMTSGGVARAMSAEGRQAGCAAGVRSKSAWTEEFLAEQEEAFAAAGEQVRQDLKEFRAMVEGPGAAAHEKLAVDMAAAGATEAEFLEEQAVLVEGIQQWQRREFVGANGGVVAVNPALVDVLGKDVGVDGVRGTATAEGRSMEEMGLMVGGPLGTIVEEE 1128
            M TNS G KRGRSDG+PD EDVKRVKITA HP TLPTFGAGEV GTTS XXXXXXXX   APT Q            GPWDR+NRVV VA AMNTDGSGLSACLGLDKLRQESAARVAECQAQL        LAEQQELFAGLHNLGVLRYAPVAHVARFQE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEEEAFLRSH GGGAGPA      A R+ AGP MTS G AR MS EGR  GCAAGV SKSAWTEEFLAEQEEAFAAAGEQVRQDLKEFR +VEGPGAAAHEKLA DMAAAGATEAEFLEEQ VL E IQQWQRREFVGANGG VA NPAL D L   VG DGV G  T  G+ +EEMGL+VGGPLGTIVEEE
Sbjct:    1 MMTNSGGLKRGRSDGVPDHEDVKRVKITAEHPETLPTFGAGEVVGTTSSXXXXXXXX---APTKQAXXXXXXXXXXXGPWDRINRVVFVATAMNTDGSGLSACLGLDKLRQESAARVAECQAQLXXXXXXXXLAEQQELFAGLHNLGVLRYAPVAHVARFQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEEEAFLRSHAGGGAGPAAAAAPPAVRARAGPAMTSAGTAREMSTEGRPEGCAAGVSSKSAWTEEFLAEQEEAFAAAGEQVRQDLKEFRVLVEGPGAAAHEKLAADMAAAGATEAEFLEEQTVLAERIQQWQRREFVGANGGAVAGNPALADALDGKVGADGVGGATTPGGQGIEEMGLVVGGPLGTIVEEE 386
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7989.16138.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized7.680e-15779.95protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJX7... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7989contigE_fasciculatus_S2_contig7989:1..1137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size1137
Hectar predicted targeting categoryother localisation
Exons1
Cds size1137
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842458.4291153-CDS-E_fasciculatus_S2_contig7989:0..11371696842458.4291153-CDS-E_fasciculatus_S2_contig7989:0..1137Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7989 1..1137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7989.16138.1prot_E_fasciculatus_S2_contig7989.16138.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7989 1..1137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7989.16138.1

>prot_E_fasciculatus_S2_contig7989.16138.1 ID=prot_E_fasciculatus_S2_contig7989.16138.1|Name=mRNA_E_fasciculatus_S2_contig7989.16138.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=379bp
MATNSDGYKRGRSDGIPDQEDVKRVKITAGHPATLPTFGAGEVAGTTSSP
AAAAAAAAAAAPTMQGPWDRLNRVVLVARAMNTDGSGLSACLGLDKLRQE
SAARVAECQAQLQAERDAELLAEQQELFAGLHNLGVLRYAPVAHVARFQE
EMSAEQQELRLVAEGLRGLRKAPASRVARCREEFRIEEEAFLRSHLGGGA
GPAAAAAAAARSGAGPVMTSGGVARAMSAEGRQAGCAAGVRSKSAWTEEF
LAEQEEAFAAAGEQVRQDLKEFRAMVEGPGAAAHEKLAVDMAAAGATEAE
FLEEQAVLVEGIQQWQRREFVGANGGVVAVNPALVDVLGKDVGVDGVRGT
ATAEGRSMEEMGLMVGGPLGTIVEEEEVE
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mRNA from alignment at E_fasciculatus_S2_contig7989:1..1137-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7989.16138.1 ID=mRNA_E_fasciculatus_S2_contig7989.16138.1|Name=mRNA_E_fasciculatus_S2_contig7989.16138.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1137bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7989:1..1137- (Ectocarpus fasciculatus EfasUO2)
ATGGCGACCAACAGCGATGGGTACAAGCGAGGGCGATCGGACGGCATCCC
GGATCAGGAGGACGTGAAGCGCGTCAAGATCACGGCTGGACACCCCGCGA
CTCTCCCGACCTTCGGCGCGGGCGAGGTCGCGGGCACAACATCGTCGCCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCGACGATGCAAGGGCC
GTGGGACAGACTCAACCGAGTGGTGCTCGTTGCCAGAGCCATGAACACGG
ACGGGAGCGGCCTCTCCGCCTGCCTCGGCCTCGATAAGCTCCGGCAGGAG
TCCGCCGCCCGCGTGGCTGAATGCCAGGCCCAGCTCCAGGCCGAGCGCGA
CGCCGAGCTCCTGGCCGAGCAACAGGAGCTGTTCGCGGGGCTGCACAACC
TCGGCGTGCTGCGGTACGCGCCCGTCGCGCACGTGGCCAGGTTCCAGGAG
GAGATGTCCGCGGAGCAGCAGGAGCTGCGGCTCGTGGCGGAGGGCTTGCG
GGGACTGCGGAAAGCACCCGCTAGCCGGGTGGCGAGGTGCCGGGAAGAGT
TCCGCATCGAGGAGGAGGCGTTCCTGAGGTCGCACCTCGGGGGAGGAGCG
GGGCCGGCGGCGGCCGCGGCCGCGGCGGCTAGGTCAGGAGCGGGGCCGGT
GATGACCTCTGGGGGAGTTGCCCGAGCGATGTCAGCGGAGGGGAGGCAAG
CGGGGTGTGCTGCTGGCGTGAGGTCCAAGTCCGCGTGGACAGAGGAGTTC
CTCGCGGAACAAGAGGAGGCATTCGCTGCGGCCGGGGAGCAGGTGCGCCA
GGACCTCAAGGAGTTCCGAGCGATGGTGGAAGGCCCGGGGGCGGCAGCGC
ACGAGAAGCTCGCGGTAGACATGGCAGCGGCGGGGGCAACGGAGGCAGAG
TTCTTGGAGGAACAAGCCGTCCTGGTGGAGGGTATCCAGCAGTGGCAGCG
GCGGGAGTTCGTGGGTGCGAATGGGGGAGTGGTGGCGGTCAACCCGGCGC
TCGTGGATGTCCTTGGCAAAGACGTGGGGGTCGACGGGGTGCGGGGCACA
GCTACGGCGGAAGGGCGGAGTATGGAGGAGATGGGTCTGATGGTGGGCGG
ACCGCTAGGCACTATCGTGGAGGAAGAGGAGGTGGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7989:1..1137-

>mRNA_E_fasciculatus_S2_contig7989.16138.1 ID=mRNA_E_fasciculatus_S2_contig7989.16138.1|Name=mRNA_E_fasciculatus_S2_contig7989.16138.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1137bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7989:1..1137- (Ectocarpus fasciculatus EfasUO2)
ATGGCGACCAACAGCGATGGGTACAAGCGAGGGCGATCGGACGGCATCCC
GGATCAGGAGGACGTGAAGCGCGTCAAGATCACGGCTGGACACCCCGCGA
CTCTCCCGACCTTCGGCGCGGGCGAGGTCGCGGGCACAACATCGTCGCCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCGACGATGCAAGGGCC
GTGGGACAGACTCAACCGAGTGGTGCTCGTTGCCAGAGCCATGAACACGG
ACGGGAGCGGCCTCTCCGCCTGCCTCGGCCTCGATAAGCTCCGGCAGGAG
TCCGCCGCCCGCGTGGCTGAATGCCAGGCCCAGCTCCAGGCCGAGCGCGA
CGCCGAGCTCCTGGCCGAGCAACAGGAGCTGTTCGCGGGGCTGCACAACC
TCGGCGTGCTGCGGTACGCGCCCGTCGCGCACGTGGCCAGGTTCCAGGAG
GAGATGTCCGCGGAGCAGCAGGAGCTGCGGCTCGTGGCGGAGGGCTTGCG
GGGACTGCGGAAAGCACCCGCTAGCCGGGTGGCGAGGTGCCGGGAAGAGT
TCCGCATCGAGGAGGAGGCGTTCCTGAGGTCGCACCTCGGGGGAGGAGCG
GGGCCGGCGGCGGCCGCGGCCGCGGCGGCTAGGTCAGGAGCGGGGCCGGT
GATGACCTCTGGGGGAGTTGCCCGAGCGATGTCAGCGGAGGGGAGGCAAG
CGGGGTGTGCTGCTGGCGTGAGGTCCAAGTCCGCGTGGACAGAGGAGTTC
CTCGCGGAACAAGAGGAGGCATTCGCTGCGGCCGGGGAGCAGGTGCGCCA
GGACCTCAAGGAGTTCCGAGCGATGGTGGAAGGCCCGGGGGCGGCAGCGC
ACGAGAAGCTCGCGGTAGACATGGCAGCGGCGGGGGCAACGGAGGCAGAG
TTCTTGGAGGAACAAGCCGTCCTGGTGGAGGGTATCCAGCAGTGGCAGCG
GCGGGAGTTCGTGGGTGCGAATGGGGGAGTGGTGGCGGTCAACCCGGCGC
TCGTGGATGTCCTTGGCAAAGACGTGGGGGTCGACGGGGTGCGGGGCACA
GCTACGGCGGAAGGGCGGAGTATGGAGGAGATGGGTCTGATGGTGGGCGG
ACCGCTAGGCACTATCGTGGAGGAAGAGGAGGTGGAG
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