mRNA_E_fasciculatus_S2_contig7972.16129.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7972.16129.1
Unique NamemRNA_E_fasciculatus_S2_contig7972.16129.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7972.16129.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN5_ECTSI)

HSP 1 Score: 629 bits (1623), Expect = 1.880e-225
Identity = 330/391 (84.40%), Postives = 342/391 (87.47%), Query Frame = 1 
Query:    1 MGNQGSFMEKVYVYLPVLMCHSKMDYSDQGTMWNIRAAYFAEQIGLFAFTAYFVFAIRRRRDHRRIFVPDITQGHVLANNVPGPDQLMYRSTSYFQHEMTEVFHELQQQFVALMLTILAHFVLGFRPILLLQIFSAPYHFSENRLLRKFVLGLKPGYRVWGERFEGELEGSKIKEGEKAAPTAAXXXXXXXXXXXXIPGLGSSSDAATSAXXXXXXXXXXXXXXXX-GEDDGSNSLPMPRELEDKLIDAWEAAGEGDFGAVMEQLGPFTVNTRTPALGWSPLMVACGLSQVGEGDIKAMVEDLDAQVDLQDQDGWTCLHWAAQQGRVDAARAVFEALGSIASEPSAAATMIQDLRAMGDAEGKTAADVAREAGLASSVLEGFLGVLEEGAR 1170
            MGNQGSFMEKVYVYLPVLMCHSKMDYSD+ T+WNIRAAYFAEQIGLFAFTAYFVFAIRRRRDHR+I VPDITQG VLANNVPGPD+LMYR T+YFQHEMTEVF +LQQQFVALMLTILAHFVLGFRPILLLQIFSAPYHFSENRLLRK VLGLKPGYRVWGERFEGELEG K+K+ E+AAPTA             IP L SSS  ATSA                 G DDGSNSLPMPRELEDKLIDAWEAAGEGDFGAVMEQLGPFTVNTRTPALGWSPLMVACGLSQVGEGDIKAMVEDLDAQVDLQDQDGWTCLHWAAQQGRVDAAR +FEALGSIASEP+AAATMIQDL AM DAEGKTAADVAR AGLASS LE FLGVLE+GAR
Sbjct:    1 MGNQGSFMEKVYVYLPVLMCHSKMDYSDKSTLWNIRAAYFAEQIGLFAFTAYFVFAIRRRRDHRKILVPDITQGQVLANNVPGPDELMYRKTTYFQHEMTEVFQQLQQQFVALMLTILAHFVLGFRPILLLQIFSAPYHFSENRLLRKLVLGLKPGYRVWGERFEGELEGDKVKKEEEAAPTAVADGEGAGD----IPALDSSSAVATSATVKAEADPAVAIAAAVAGGDDGSNSLPMPRELEDKLIDAWEAAGEGDFGAVMEQLGPFTVNTRTPALGWSPLMVACGLSQVGEGDIKAMVEDLDAQVDLQDQDGWTCLHWAAQQGRVDAARVIFEALGSIASEPTAAATMIQDLLAMRDAEGKTAADVARGAGLASSDLEEFLGVLEDGAR 387
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BLAST of mRNA_E_fasciculatus_S2_contig7972.16129.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K295_9PHAE)

HSP 1 Score: 417 bits (1073), Expect = 1.460e-143
Identity = 227/278 (81.65%), Postives = 232/278 (83.45%), Query Frame = 1 
Query:  340 MLTILAHFVLGFRPILLLQIFSAPYHFSENRLLRKFVLGLKPGYRVWGERFEGELEGSKIKEGEKAAPTAAXXXXXXXXXXXXIPGLGSSSDAATSAXXXXXXXXXXXXXXXX-GEDDGSNSLPMPRELEDKLIDAWEAAGEGDFGAVMEQLGPFTVNTRTPALGWSPLMVACGLSQVGEGDIKAMVEDLDAQVDLQDQDGWTCLHWAAQQGRVDAARAVFEALGSIASEPSAAATMIQDLRAMGDAEGKTAADVAREAGLASSVLEGFLGVLEEGAR 1170
            MLTILAHFVLGFRPILLLQIFS PYHFSENRLLRKFVLGLKPGYRVWGER EGELEG KIK  E+AAPT              IPGLG SS AA SA                 G DDGSNSLPMPRELEDKL+DAWEAAGEGDFGAVMEQLGPF+VNTRTPALGWSPLMVACGLSQVGEGDIKAMVED DAQVDLQDQDGWTCLHWAAQQGRVDAARAVFEALGSIASEP+AAATMIQDLRAM DAEGKTAADVAR AGLASS LE  LGVLE+GAR
Sbjct:    1 MLTILAHFVLGFRPILLLQIFSTPYHFSENRLLRKFVLGLKPGYRVWGERIEGELEGGKIKNEEEAAPTDVADGEGAGG----IPGLGYSSAAAGSAAVKAEADPAATITAAVAGGDDGSNSLPMPRELEDKLVDAWEAAGEGDFGAVMEQLGPFSVNTRTPALGWSPLMVACGLSQVGEGDIKAMVEDFDAQVDLQDQDGWTCLHWAAQQGRVDAARAVFEALGSIASEPAAAATMIQDLRAMRDAEGKTAADVARGAGLASSDLEEILGVLEDGAR 274
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BLAST of mRNA_E_fasciculatus_S2_contig7972.16129.1 vs.
Match: Uncharacterized (protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M330_BLAHO)

HSP 1 Score: 59.7 bits (143), Expect = 4.690e-7
Identity = 39/132 (29.55%), Postives = 65/132 (49.24%), Query Frame = 1 
Query:  721 LEDKLIDAWEAAGEGDFGAVMEQLGPFTVNTRTPALGWSPLMVACGLSQVGEGDIKAMVEDLDAQVDLQDQDGWTCLHWAAQQGRVDAARAVFEALGSIASEPSAAATMIQDLRAMGDAEGKTAADVAREAG 1116
            L+ ++   W+      + ++++      VNT T   GW+PLMV  G + +G+ +    +  L   +D QD +GWTCLHWAA    V     + E +GS+          +  L  + + EG TA +VA++ G
Sbjct:   32 LKKEIQKCWDDGEVATYDSLLQLCSLAGVNTATEH-GWTPLMVIMG-NPLGDMNAIDTLVKLRVSIDAQDDEGWTCLHWAAYHNNVGGVEKLMETVGSVP---------VLKLLTVKNKEGLTALEVAKKNG 152
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BLAST of mRNA_E_fasciculatus_S2_contig7972.16129.1 vs.
Match: Uncharacterized (protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SIM2_BLAHN)

HSP 1 Score: 57.8 bits (138), Expect = 1.060e-5
Identity = 30/97 (30.93%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:  721 LEDKLIDAWEAAGEGDFGAVMEQLGPFTVNTRTPALGWSPLMVACGLSQVGEGDIKAMVEDLDAQVDLQDQDGWTCLHWAAQQGRVDAARAVFEALG 1011
            LED+++  W+      +  +++      VNT T   GW+ LMV  G +  G+ ++   +  +   ++L+D +GWTC+HWAA    V A   + E+LG
Sbjct:  137 LEDEIVKCWDDGEIATYDKLLKLCQLCGVNTTTEH-GWTALMVVFG-NPYGDMNVIPKLVGMGGNLELEDDEGWTCMHWAAYHNNVAAVELLLESLG 231
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7972.16129.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized1.880e-22584.40protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.460e-14381.65protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.690e-729.55protein n=1 Tax=Blastocystis hominis TaxID=12968 R... [more]
Uncharacterized1.060e-530.93protein n=1 Tax=Blastocystis sp. subtype 1 (strain... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7972contigE_fasciculatus_S2_contig7972:2437..5606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score636.7
Seed ortholog evalue7e-180
Seed eggNOG ortholog2880.D8LIN5
Model size1176
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Phosphate transport (Pho88)
EggNOG OGs2CMQ9@1,2QRCY@2759
Ec32 ortholog descriptionInorganic phosphate transporter Pho88
Ec32 orthologEc-11_004540.1
Cds size1173
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7972.16129.1prot_E_fasciculatus_S2_contig7972.16129.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7972 2440..5606 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842457.4277925-UTR-E_fasciculatus_S2_contig7972:2436..24391696842457.4277925-UTR-E_fasciculatus_S2_contig7972:2436..2439Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7972 2437..2439 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842457.4465175-CDS-E_fasciculatus_S2_contig7972:2439..27451696842457.4465175-CDS-E_fasciculatus_S2_contig7972:2439..2745Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7972 2440..2745 -
1696842457.458777-CDS-E_fasciculatus_S2_contig7972:3077..33081696842457.458777-CDS-E_fasciculatus_S2_contig7972:3077..3308Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7972 3078..3308 -
1696842457.470448-CDS-E_fasciculatus_S2_contig7972:3678..40111696842457.470448-CDS-E_fasciculatus_S2_contig7972:3678..4011Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7972 3679..4011 -
1696842457.4825034-CDS-E_fasciculatus_S2_contig7972:4441..46151696842457.4825034-CDS-E_fasciculatus_S2_contig7972:4441..4615Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7972 4442..4615 -
1696842457.4919658-CDS-E_fasciculatus_S2_contig7972:5477..56061696842457.4919658-CDS-E_fasciculatus_S2_contig7972:5477..5606Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7972 5478..5606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7972.16129.1

>prot_E_fasciculatus_S2_contig7972.16129.1 ID=prot_E_fasciculatus_S2_contig7972.16129.1|Name=mRNA_E_fasciculatus_S2_contig7972.16129.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=391bp
MGNQGSFMEKVYVYLPVLMCHSKMDYSDQGTMWNIRAAYFAEQIGLFAFT
AYFVFAIRRRRDHRRIFVPDITQGHVLANNVPGPDQLMYRSTSYFQHEMT
EVFHELQQQFVALMLTILAHFVLGFRPILLLQIFSAPYHFSENRLLRKFV
LGLKPGYRVWGERFEGELEGSKIKEGEKAAPTAAAAAEGEGEGAGAIPGL
GSSSDAATSAVKVEAEPAVTVTAAVAGEDDGSNSLPMPRELEDKLIDAWE
AAGEGDFGAVMEQLGPFTVNTRTPALGWSPLMVACGLSQVGEGDIKAMVE
DLDAQVDLQDQDGWTCLHWAAQQGRVDAARAVFEALGSIASEPSAAATMI
QDLRAMGDAEGKTAADVAREAGLASSVLEGFLGVLEEGAR*
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mRNA from alignment at E_fasciculatus_S2_contig7972:2437..5606-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7972.16129.1 ID=mRNA_E_fasciculatus_S2_contig7972.16129.1|Name=mRNA_E_fasciculatus_S2_contig7972.16129.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3170bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7972:2437..5606- (Ectocarpus fasciculatus EfasUO2)
ATGGGGAACCAAGGCTCCTTCATGGAGAAGGTGTACGTGTATTTGCCTGT
GCTGATGTGCCATTCCAAGATGGACTACTCCGACCAGGGCACGATGTGGA
ACATCCGAGCTGCCTACTTCGCTGAGCAGGTAAGCTGGAAGTGGAGAGTC
GGCAAAGACGAGTGGCGCCGGGAATGTTGGGCGTGATTTCTCTTGCTTAG
GCCACGTGTCGGCCGCTAAATTTAGGGACAGAGTGGAAAGAAGCAGCGGT
CTGTGCGTAAGATTGCAGGCGTGGTTTGGTAATCAGGGCGGGAGAAGGAG
GGACACACGTACACGGCGCAAGTTTACTAAATCGAAGTATAGCTTTTCTA
CGCCGCTGCTGCTAACGGTAGGTCAGCTGGTGAAGGTTAACGGATTGGCT
GAACTTCATGTACGACCCCCCTCTTTCCACGCATGCACCTGTTCGTTGGC
CCAACGCGTGCCACCAGCCAAAAGTGTGGAGTGCGTTTACTAAATTTCGG
CCCTCACTCGGATGGGGAGGGGGTACATCATCTCATATAGATGACAGCGA
GACCGGCATCGCTGTTTGCTGTTTTCTCCTGTAGTTTGTTTGCAGCGGTT
GGTGACGAGAAACTCGGTCAGAGAAAAAAAGTTGTGCATGATGATGTAGA
TCGAGGCAGAAAACCTGGAAAAAGATAGGGGAATAGGGCTGAACATACAG
CAGGAGGATCCGGCAGTACGGATAACAAAAGAAACCTTCATTTTTGAAAA
ATCAGCGAGGGTATATGTAGCCTGTTTTCCTAAACCCGAAGTTGACAGTT
CTTACTGCCCAACGCTACCTGCTGTGTACAAACCAGTGCCACGATACTTG
GCCCCCGTATCCGACAGCGAACCTTCGACCACCGCGACCACACCTCTTTA
ACCGAAGAAATAAATGCCATTCCACCACCACCACCACCACCACCACATCC
CCTCGCGTTTCTATGTCCGCACGCCTCATCATCATCATCAGATCGGCCTC
TTCGCGTTCACGGCGTACTTCGTCTTCGCCATCCGAAGAAGGCGCGATCA
TCGAAGAATATTCGTTCCGGATATAACGCAGGGGCATGTGCTAGCCAACA
ACGTCCCTGGCCCGGACCAATTGATGTACCGTAGCACGAGCTACTTCCAG
CACGAGATGACCGAGGTGGGCGTGTGGGCTCCCAGGAAAGCGCCTTTTAT
GTTTTGCCCACGTGGGCGGAGCGTTATTGTTGGTAGGTTTGGGAAGAGCC
AGCCCGCGACATGGTTATGTCTAGGGGTTTTCGTGCCTTTGAGAGGGCGA
GCTTATAGCCAGAAGCGGGTCGGGGGTTCCATTTGAACGCCCCAACAGGC
GCTCGGTCGCCAGCTGGTGCACGTACGAAAGGACTGCTGTTGGTTCAACG
TTCTCCTCTTGGATGAGTCCACCATGCTCCTGCCGGCCGTCGCCGCCAAA
ACCCGTTTCTCACCGTGATACGCTCACCCACCCAGCGGCCAAAGGGGACT
TCAATAACACCAGCAGTAGTTCCGATACCCACCTCCCTTTCCAGCGCTCA
AAACTTCACCCCCACACAACGTCAACAAAAAAATGCCCCCGACAGGTGTT
CCATGAGCTCCAGCAGCAGTTCGTGGCCCTCATGCTGACGATCCTGGCGC
ACTTCGTGCTGGGATTCCGGCCCATCCTCCTGCTGCAAATATTCTCCGCG
CCCTACCACTTCTCCGAGAACCGACTCCTGCGCAAGTTCGTCCTGGGCCT
CAAGCCGGGCTACCGCGTCTGGGGGGAGAGGTTTGAAGGAGAGCTGGAAG
GGAGTAAGATTAAGGAAGGGGAGAAGGCGGCTCCGACGGCGGCGGCGGCG
GCGGAGGGGGAGGGGGAGGGGGCGGGCGCCATTCCCGGGTTGGGTTCTTC
GTCAGATGCTGCTACTTCTGCTGTGAAGGTGAGCCTGTTGTGTTTTATTT
TGGTGGGCATGGGAACGCCCTTGAGGAACGGGCAAGGAAAAATACAAAAC
CATGTCACGTCAAGGTTTTTGGAACTTGGAGGGAAAGCGATGGTTGACAC
GAAGAAATGTTTAGATGGTGATCAGGCAACATGGACGTGAAGTGTAGAGT
AGGTCATTGTTTGCTGCAACACCAAACGAGTACCACGTCGCCAGTCTGTA
GTGTAGAATAGCACGAGGGTGCGCTGTCTCAGAACAAATGCGAGGCCAAA
CAGTCCGCCGCGCTCCTCAAACCACAATTTTACGGCGACGTCACTAAGCA
CTAACTAGTTAGCCTTTTCTCCCACATCTACCCAAACACAAACCACAGGT
GGAAGCCGAGCCAGCAGTAACGGTCACCGCCGCGGTGGCCGGGGAGGACG
ACGGGAGCAATAGTCTGCCGATGCCGAGGGAGTTGGAGGACAAGCTGATC
GACGCTTGGGAGGCGGCGGGGGAGGGGGACTTCGGCGCCGTGATGGAGCA
GCTGGGGCCGTTCACCGTCAACACGCGGACCCCCGCGTTGGGGTGGAGCC
CTCTCATGGTGGCGTGCGGTTTGTCGCAGGTGTGCCCAGCTGCCGTCGTG
CTTACGAGCGCGCGCGCGGGGGGGGTCGGTAGTCGTTTCATGTGGTAGCA
ACGTGGTTGGTTGCGTCGGGTAATCTGTGTTTTGTCGTTTGCTTGTGTGG
GGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCA
TTTTCTCCATCCGTGGGACCTGATTTCATTGGCTTGATCACACCATCGCC
GCCGTCATGCGAACGTGCGTGCCAGTGCTGTCTTGCTGGCGCAATCAGCC
GCAAGTGCTGTCCTATTTCGCCCTACAAACGGAACGAGCCGCTAACCGTG
ACCCTCTTCAGGTGGGAGAAGGAGACATCAAGGCGATGGTCGAAGACCTC
GACGCTCAAGTCGACCTCCAGGACCAGGACGGGTGGACGTGCCTCCACTG
GGCCGCGCAGCAAGGCCGCGTCGATGCCGCCCGGGCGGTCTTCGAAGCCC
TCGGAAGCATCGCCAGCGAGCCGTCCGCCGCGGCGACCATGATCCAAGAC
CTCCGAGCGATGGGGGATGCGGAGGGGAAAACCGCGGCAGATGTGGCAAG
GGAGGCAGGGCTGGCCAGTTCGGTTTTGGAGGGATTTTTGGGGGTCTTGG
AAGAAGGGGCTCGGTAGGCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7972:2437..5606-

>mRNA_E_fasciculatus_S2_contig7972.16129.1 ID=mRNA_E_fasciculatus_S2_contig7972.16129.1|Name=mRNA_E_fasciculatus_S2_contig7972.16129.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1173bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7972:2437..5606- (Ectocarpus fasciculatus EfasUO2)
ATGGGGAACCAAGGCTCCTTCATGGAGAAGGTGTACGTGTATTTGCCTGT
GCTGATGTGCCATTCCAAGATGGACTACTCCGACCAGGGCACGATGTGGA
ACATCCGAGCTGCCTACTTCGCTGAGCAGATCGGCCTCTTCGCGTTCACG
GCGTACTTCGTCTTCGCCATCCGAAGAAGGCGCGATCATCGAAGAATATT
CGTTCCGGATATAACGCAGGGGCATGTGCTAGCCAACAACGTCCCTGGCC
CGGACCAATTGATGTACCGTAGCACGAGCTACTTCCAGCACGAGATGACC
GAGGTGTTCCATGAGCTCCAGCAGCAGTTCGTGGCCCTCATGCTGACGAT
CCTGGCGCACTTCGTGCTGGGATTCCGGCCCATCCTCCTGCTGCAAATAT
TCTCCGCGCCCTACCACTTCTCCGAGAACCGACTCCTGCGCAAGTTCGTC
CTGGGCCTCAAGCCGGGCTACCGCGTCTGGGGGGAGAGGTTTGAAGGAGA
GCTGGAAGGGAGTAAGATTAAGGAAGGGGAGAAGGCGGCTCCGACGGCGG
CGGCGGCGGCGGAGGGGGAGGGGGAGGGGGCGGGCGCCATTCCCGGGTTG
GGTTCTTCGTCAGATGCTGCTACTTCTGCTGTGAAGGTGGAAGCCGAGCC
AGCAGTAACGGTCACCGCCGCGGTGGCCGGGGAGGACGACGGGAGCAATA
GTCTGCCGATGCCGAGGGAGTTGGAGGACAAGCTGATCGACGCTTGGGAG
GCGGCGGGGGAGGGGGACTTCGGCGCCGTGATGGAGCAGCTGGGGCCGTT
CACCGTCAACACGCGGACCCCCGCGTTGGGGTGGAGCCCTCTCATGGTGG
CGTGCGGTTTGTCGCAGGTGGGAGAAGGAGACATCAAGGCGATGGTCGAA
GACCTCGACGCTCAAGTCGACCTCCAGGACCAGGACGGGTGGACGTGCCT
CCACTGGGCCGCGCAGCAAGGCCGCGTCGATGCCGCCCGGGCGGTCTTCG
AAGCCCTCGGAAGCATCGCCAGCGAGCCGTCCGCCGCGGCGACCATGATC
CAAGACCTCCGAGCGATGGGGGATGCGGAGGGGAAAACCGCGGCAGATGT
GGCAAGGGAGGCAGGGCTGGCCAGTTCGGTTTTGGAGGGATTTTTGGGGG
TCTTGGAAGAAGGGGCTCGGTAG
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