mRNA_E_fasciculatus_S2_contig797.16124.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig797.16124.1
Unique NamemRNA_E_fasciculatus_S2_contig797.16124.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig797.16124.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig797contigE_fasciculatus_S2_contig797:10513..10890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size378
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842456.7465434-UTR-E_fasciculatus_S2_contig797:10512..105311696842456.7465434-UTR-E_fasciculatus_S2_contig797:10512..10531Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig797 10513..10531 +
1696842456.7681782-UTR-E_fasciculatus_S2_contig797:10864..108901696842456.7681782-UTR-E_fasciculatus_S2_contig797:10864..10890Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig797 10865..10890 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842456.7578416-CDS-E_fasciculatus_S2_contig797:10531..108641696842456.7578416-CDS-E_fasciculatus_S2_contig797:10531..10864Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig797 10532..10864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig797.16124.1prot_E_fasciculatus_S2_contig797.16124.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig797 10532..10864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig797.16124.1

>prot_E_fasciculatus_S2_contig797.16124.1 ID=prot_E_fasciculatus_S2_contig797.16124.1|Name=mRNA_E_fasciculatus_S2_contig797.16124.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=111bp
MHTSIDIPPRYHPFSTPAGHTLYSSTKQLLISRENNKKSEKRDIDYGSLT
CFALSLTKSVLLLACNTIRSRRYMMLPAMTFLRRTHYLGPSETEKTPIND
RESAKTKAYN*
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mRNA from alignment at E_fasciculatus_S2_contig797:10513..10890+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig797.16124.1 ID=mRNA_E_fasciculatus_S2_contig797.16124.1|Name=mRNA_E_fasciculatus_S2_contig797.16124.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=378bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig797:10513..10890+ (Ectocarpus fasciculatus EfasUO2)
CTCTTGTGTAGCATATTGTATGCATACGTCGATTGATATTCCTCCTCGAT
ACCATCCGTTTTCTACCCCAGCAGGCCACACTCTCTACAGCAGTACAAAG
CAGCTATTAATATCACGAGAGAACAACAAAAAAAGCGAAAAAAGGGATAT
AGACTATGGTAGTCTAACGTGCTTTGCTCTCAGTCTAACTAAGTCTGTTC
TCTTACTCGCTTGCAACACCATACGTAGCCGACGTTACATGATGTTGCCG
GCAATGACATTTCTCCGCCGCACGCACTATCTGGGACCTTCCGAGACAGA
AAAAACACCCATAAACGATCGGGAATCGGCGAAGACAAAAGCCTACAATT
AGTGGTCTTTCATCCCACCGCAGCTGCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig797:10513..10890+

>mRNA_E_fasciculatus_S2_contig797.16124.1 ID=mRNA_E_fasciculatus_S2_contig797.16124.1|Name=mRNA_E_fasciculatus_S2_contig797.16124.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=333bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig797:10513..10890+ (Ectocarpus fasciculatus EfasUO2)
ATGCATACGTCGATTGATATTCCTCCTCGATACCATCCGTTTTCTACCCC
AGCAGGCCACACTCTCTACAGCAGTACAAAGCAGCTATTAATATCACGAG
AGAACAACAAAAAAAGCGAAAAAAGGGATATAGACTATGGTAGTCTAACG
TGCTTTGCTCTCAGTCTAACTAAGTCTGTTCTCTTACTCGCTTGCAACAC
CATACGTAGCCGACGTTACATGATGTTGCCGGCAATGACATTTCTCCGCC
GCACGCACTATCTGGGACCTTCCGAGACAGAAAAAACACCCATAAACGAT
CGGGAATCGGCGAAGACAAAAGCCTACAATTAG
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