mRNA_E_fasciculatus_S2_contig7968.16121.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7968.16121.1 vs.
Match: PAS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYK0_9PHAE) HSP 1 Score: 716 bits (1849), Expect = 2.800e-253 Identity = 437/567 (77.07%), Postives = 457/567 (80.60%), Query Frame = 1
Query: 151 DRHDVAEVGSPALSGGVISSPSPEPYHPCSLPPLQQPHQQLQDVLDWPASPRLGGWQAPPSRAMSPMAASGPVVFSTEGDFLQSLQSTG-GGNAAWEHEEGSTTTDNGSSDCSEDMDPVPLFPFH--HKNPQNNGCTFEDSLQSLVEEVAGGGGGVSNCFDLADAAAQAAAAAPSPTAIVPRAGGLQNLVFPAAAKAAAVXXXXX--GTAAAAIVPRGVLEKVSLGKQLLVSPGPSSQVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAAVGKPAKKVAGNGPKKQKKQPLQEQKNPSSPVQLKIKIARKTKALGTGTPEEGPANG--GRPRKAARTAAVTLVAKNPPKSGGVRKAAGRVGGSSTKRVKVSPSKGSPAPASSAVATGGDG---DRFLDEKARRSREKNRDHSRRSRERKKAQLEGLKQASIDLGPYRMLVEQAHDMISVHSANADAFFALASGAFYRQLGFEPTKLLGASLLDLVEPKDAQAVVQAIMDTLSRGGIKQAS-------CVQYRMRPPSSADAIEVETSFRIASRRLLAITRIVAAGVPRSVSPAQ 1800
++HDV GSPALSGGV+SSPSPEPYH CSL PLQQ HQQLQDVLDWPASPRLG QAPPSRA+SPMAAS PVVFSTEGDFLQ+LQSTG GG+ AWEHE GSTTTDNGSSDCSED+DPVPLFPFH H NNGCTFEDSLQSLVEEV GGGG VSNCFDLADAAA+AA AA +PTA+VPRA G +NLVFPAAA A XXXXX GTAAA IVPRGVL+KVSLGKQLLVSPG SS V PA GK K+VAGN PKK KKQPLQEQ N SSPVQLKIK A+K KALGTGTPE A GRPRKAART A T VAK PPKSG VRKAAGR GSSTKRVKVS SKGSPAPAS AVA G DG DRFLD+KARR+REKNRDHSRRSRERKKAQLEGLKQASIDLGPYRMLVEQAHDMISVHSA+ADAFFALASGAFYRQLGFEPTK+LG SLLDLVEPKD QAVVQAIMDTLSRGGIKQAS VQYRMRPPS DA+EVETSFR+ASRRLLAITRIV AGV R VSPAQ
Sbjct: 2 EQHDV---GSPALSGGVVSSPSPEPYHSCSLLPLQQQHQQLQDVLDWPASPRLGALQAPPSRALSPMAAS-PVVFSTEGDFLQTLQSTGCGGSTAWEHE-GSTTTDNGSSDCSEDLDPVPLFPFHPNHHQNNNNGCTFEDSLQSLVEEVTGGGG-VSNCFDLADAAAEAATAASAPTAVVPRASGPKNLVFPAAAAAXXXXXXXXXVGTAAAGIVPRGVLDKVSLGKQLLVSPGSSSPVAPATAAAPVSPPTSPPHTQQQQAPKRKQR-PAVGSGKSIKRVAGNVPKKHKKQPLQEQNN-SSPVQLKIKTAKKAKALGTGTPEAPAAEAAEGRPRKAARTPA-TSVAKIPPKSGDVRKAAGRGEGSSTKRVKVSLSKGSPAPASPAVAAGKDGKDGDRFLDDKARRNREKNRDHSRRSRERKKAQLEGLKQASIDLGPYRMLVEQAHDMISVHSADADAFFALASGAFYRQLGFEPTKMLGTSLLDLVEPKDVQAVVQAIMDTLSRGGIKQASFMHSVPKLVQYRMRPPSDGDAVEVETSFRMASRRLLAITRIVGAGVSRPVSPAQ 559
BLAST of mRNA_E_fasciculatus_S2_contig7968.16121.1 vs.
Match: PAS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJL9_ECTSI) HSP 1 Score: 613 bits (1581), Expect = 4.080e-213 Identity = 414/583 (71.01%), Postives = 432/583 (74.10%), Query Frame = 1
Query: 67 RASSWASSPTAKLYEAGAPHQRQLLQPKDRHDVAEVGSPALSGGVISSPSPEPYHPCSLPPLQQPHQQLQDVLDWPASPRLGGWQAPPSRAMSPMAASGPVVFSTEGDFLQSLQSTGGGNAAWEHEEGSTTTDNGSSDCSEDMDPVPLFPFHHKNPQNNGCTFEDSLQSLVEEVAGGGGGVSNCFDLADAAAQAAAAAPSPTAIVPRAGGLQNLVFPAAAKAAAVXXXXXGTAAAAIVPRGVLEKVSLGKQLLVSPGPSSQVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----PAAAVGKPAKKVAGNGPKKQKKQPLQEQKNPSSPVQLKIKIARKTKALGTGTPEEGPANGGRPRKAARTAAVTLVAKNPPKSGGVRKAAGRVGGSSTKRVKVSPSKGSPAPASSAVATGG-DGDRFLDEKARRSREKNRDHSRRSRERKKAQLEGLKQASIDLGPYRMLVEQAHDMISVHSANADAFFALASGAFYRQLGFEPTKLLGASLLDLVEPKDAQAVVQAIMDTLSRGGIKQASCVQYRMRPPSSADAIEVETSFRIASRRLLAITRIVAAGVPRSVSPAQ 1800
RASSWASSPTAKLYEAGAP Q+QLLQPK++HDV +VGSPALSGGV+SSPSPEPYHPCSL PLQ HQQLQDVLDWPASPRLGG QAPP+RA+SPMAA SLQSLVEEVAGGGG VSNCFDLADAAA+AAAAA S TA V RA G +NLVFPA XXX GTAAAAIVPRGVLEKVSLGKQLLVSP SS V XXXXXXXXXXXXXXXXXXXXXXXXX PA GKP KKVAGNGPKKQKKQPLQEQKNPS GRPRKAARTAA T +AK+PPKSGGVRKAAGR GGSSTKRVKVSPS GSPAPAS AVA G DGDRFLD+K RRSREKNRDHSRRSR+RKKAQLEGLKQASIDLGPYRMLVEQAHDMISVHSA+ADAFFALASGAFYRQLGFEPTK+LGASLLDLVE KD QAVVQAIMDTLSRGGIKQ VQYRMRPPS DA+EVETSFR+ASRRLLAITRIV AGVPRSVSPA+
Sbjct: 5 RASSWASSPTAKLYEAGAP-QQQLLQPKEQHDVRDVGSPALSGGVVSSPSPEPYHPCSLLPLQHQHQQLQDVLDWPASPRLGGLQAPPTRALSPMAA--------------------------------------------------------------------SLQSLVEEVAGGGG-VSNCFDLADAAAEAAAAAFSHTATVSRASGSKNLVFPAXXXX--XXXXKVGTAAAAIVPRGVLEKVSLGKQLLVSPECSSPVAAXXXXXXXXXXXXXXXXXXXXXXXXXAPKRKQRPAVGSGKPTKKVAGNGPKKQKKQPLQEQKNPSXXXXXXXXXXXXXXXXXXXXXXXXXXAEGRPRKAARTAA-TSMAKSPPKSGGVRKAAGRGGGSSTKRVKVSPSNGSPAPASPAVAAAGKDGDRFLDDKTRRSREKNRDHSRRSRQRKKAQLEGLKQASIDLGPYRMLVEQAHDMISVHSADADAFFALASGAFYRQLGFEPTKMLGASLLDLVETKDVQAVVQAIMDTLSRGGIKQ---VQYRMRPPSDGDAVEVETSFRMASRRLLAITRIVGAGVPRSVSPAK 511
BLAST of mRNA_E_fasciculatus_S2_contig7968.16121.1 vs.
Match: PAS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ44_9PHAE) HSP 1 Score: 115 bits (288), Expect = 1.250e-24 Identity = 71/152 (46.71%), Postives = 92/152 (60.53%), Query Frame = 1
Query: 1321 DEKARRSREKNRDHSRRSRERKKAQLEGLKQASIDLGPYRMLVEQAHDMISVHSANADAFFALASGAFYRQLGFEPTKLLGASLLDLVEPKDAQAVVQAIMDTLSRGGIKQASCVQYRMRPPSSADAIEVETSFRIASRRLLAITRIVAAGV 1776
+E+ R+R +NRDHSRRSR+RKKA +EG+K +LG YRMLVEQAHD+IS H+ + F AS AF R LG LLG L+ LV P DA V +A+ L + Q V YR+R VE+SFR+ +L+AITR+ GV
Sbjct: 178 EERLERNRIRNRDHSRRSRQRKKALVEGMKNQVTELGAYRMLVEQAHDLISAHTTDDRTVFLYASNAFQRALGIRTEDLLGVQLIHLVHPDDAGRVTEALRRALLCNQVTQV--VVYRLR--HQQQEFTVESSFRVVPTKLVAITRVGGPGV 325
BLAST of mRNA_E_fasciculatus_S2_contig7968.16121.1 vs.
Match: Multi-sensor (hybrid histidine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G032_ECTSI) HSP 1 Score: 87.0 bits (214), Expect = 8.770e-17 Identity = 53/124 (42.74%), Postives = 68/124 (54.84%), Query Frame = 1
Query: 1405 LKQASIDLGPYRMLVEQAHDMISVHSANADAFFALASGAFYRQLGFEPTKLLGASLLDLVEPKDAQAVVQAIMDTLSRGGIKQASCVQYRMRPPSSADAIEVETSFRIASRRLLAITRIVAAGV 1776
+K +LG YRMLVEQAHD+IS H+ + F AS AF R LG LLG L+ LV P DA V +A+ L + Q V YR+R VE+SFR+ +L+AITR+ GV
Sbjct: 1 MKNQVTELGAYRMLVEQAHDLISAHTTDDRTVFLYASNAFQRVLGISTEDLLGVQLIHLVHPDDAGRVTEALPPALLCNQVTQV--VVYRLR--HQQQEFTVESSFRVVPTKLVAITRVGGPGV 120
BLAST of mRNA_E_fasciculatus_S2_contig7968.16121.1 vs.
Match: PAS (domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WZ67_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 1.150e-10 Identity = 54/147 (36.73%), Postives = 84/147 (57.14%), Query Frame = 1
Query: 1327 KARRSREKNRDHSRRSRERKKAQLEGLKQASIDLGPYRMLVEQAHDMISVHSANADAFFALASGAFYRQLGFEPTKLLGA--SLLDLVEPKDAQAVVQAIMDTLSRGGIKQASCVQYRMRPPSSADAIEVETSFRIASRRLLAITRI 1761
K +SRE+NRDHSR+SR RKK +E LK L Y+ + EQ D I++ +A + A F +S A+ R LG++P +++ S LDLV P +AQ V +A+ S G + Q+R++ + ETS R+A + ++ TR+
Sbjct: 238 KEEKSRERNRDHSRKSRLRKKEFVESLKHEVGQLQVYQQICEQCLDCIALVAAESSAIFLYSSAAYTRVLGYQPHQIVPGQTSFLDLVHPDNAQEV-RAVFTKFSTLG--ETRRFQFRIKS-MEGEYFRAETSARLAEKGVVCSTRV 380
BLAST of mRNA_E_fasciculatus_S2_contig7968.16121.1 vs.
Match: PAS (domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPB1_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 5.080e-9 Identity = 50/147 (34.01%), Postives = 84/147 (57.14%), Query Frame = 1
Query: 1327 KARRSREKNRDHSRRSRERKKAQLEGLKQASIDLGPYRMLVEQAHDMISVHSANADAFFALASGAFYRQLGFEPTKLLGA--SLLDLVEPKDAQAVVQAIMDTLSRGGIKQASCVQYRMRPPSSADAIEVETSFRIASRRLLAITRI 1761
K +SRE+NRDHSR+SR RKK +E LK L Y+ + EQ D I++ +A A A F +S A+ R LG++ +++ S LD+V P + Q V +A+ L+ G + ++R++ + + ET+ R+A + ++ TR+
Sbjct: 139 KEEKSRERNRDHSRKSRLRKKEFVESLKHEVGQLQVYQQICEQCMDCIALVAAEASAVFLFSSAAYTRVLGYQNHQIVPGQTSFLDMVHPDNVQEV-RAVFTKLNTLG--ETHRFKFRIKS-TDGEYFPAETTARLAEKGVVCSTRV 281
BLAST of mRNA_E_fasciculatus_S2_contig7968.16121.1 vs.
Match: PAS (domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1Z3_PYTIN) HSP 1 Score: 69.7 bits (169), Expect = 5.410e-9 Identity = 53/148 (35.81%), Postives = 83/148 (56.08%), Query Frame = 1
Query: 1327 KARRSREKNRDHSRRSRERKKAQLEGLKQASIDLGPYRMLVEQAHDMISVHSANADAFFALASGAFYRQLGFEPTKLLG--ASLLDLVEPKDAQAVVQAIMDTLSR-GGIKQASCVQYRMRPPSSADAIEVETSFRIASRRLLAITRI 1761
K +SRE+NRDHSR+SR RKK +E LK L Y+ + E D+I + +A A F S ++ R LG++ ++L+ AS LDLV P A V++I S G K+ ++R+R + + + ETS R+A + ++ TR+
Sbjct: 262 KEEKSRERNRDHSRKSRLRKKEYVESLKMEVQQLQIYQQVCEYNQDLIXLVTAEPKAVFLFTSSSYARVLGYQGSQLIPGQASFLDLVHPSQV-AEVRSIFQKFSNIGDFKR---FRFRIRS-ADGEFFDAETSARVAEKGVVCSTRV 404
BLAST of mRNA_E_fasciculatus_S2_contig7968.16121.1 vs.
Match: PAS (domain-containing protein n=24 Tax=Phytophthora TaxID=4783 RepID=H3GUL9_PHYRM) HSP 1 Score: 68.9 bits (167), Expect = 8.440e-9 Identity = 50/147 (34.01%), Postives = 84/147 (57.14%), Query Frame = 1
Query: 1327 KARRSREKNRDHSRRSRERKKAQLEGLKQASIDLGPYRMLVEQAHDMISVHSANADAFFALASGAFYRQLGFEPTKLLGA--SLLDLVEPKDAQAVVQAIMDTLSRGGIKQASCVQYRMRPPSSADAIEVETSFRIASRRLLAITRI 1761
K +SRE+NRDHSR+SR RKK +E LK L Y+ + EQ D I++ +A A A F +S A+ R LG++ +++ S LD+V P + Q V +A+ L+ G + ++R++ + + ET+ R+A + ++ TR+
Sbjct: 237 KEEKSRERNRDHSRKSRLRKKEFVESLKHEVGQLQVYQQICEQCMDCIALVAAEASAVFLFSSAAYTRVLGYQNHQIVPGQTSFLDMVHPDNVQEV-RAVFTKLNTLG--ETHRFKFRIKS-TDGEFFNAETTARLAEKGVVCSTRV 379
BLAST of mRNA_E_fasciculatus_S2_contig7968.16121.1 vs.
Match: PAS (domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VUN5_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.580e-8 Identity = 50/147 (34.01%), Postives = 83/147 (56.46%), Query Frame = 1
Query: 1327 KARRSREKNRDHSRRSRERKKAQLEGLKQASIDLGPYRMLVEQAHDMISVHSANADAFFALASGAFYRQLGFEPTKLLGA--SLLDLVEPKDAQAVVQAIMDTLSRGGIKQASCVQYRMRPPSSADAIEVETSFRIASRRLLAITRI 1761
K +SRE+NRDHSR+SR RKK +E LK L Y+ + EQ D I++ +A A A F +S A+ R LG++ +++ S LD+V P + Q V +A+ L+ G + ++R++ + ET+ R+A + ++ TR+
Sbjct: 248 KEEKSRERNRDHSRKSRLRKKEFVESLKHEVGQLQVYQQICEQCMDCIALVAAEASAIFLFSSAAYTRVLGYQNHQIVPGQTSFLDMVHPDNVQEV-RAVFTKLNTLG--ETHRFKFRIKS-MDGEYFNAETTARMAEKGVVCSTRV 390
BLAST of mRNA_E_fasciculatus_S2_contig7968.16121.1 vs.
Match: PAS (domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WD31_GLOUD) HSP 1 Score: 67.0 bits (162), Expect = 3.840e-8 Identity = 51/147 (34.69%), Postives = 79/147 (53.74%), Query Frame = 1
Query: 1327 KARRSREKNRDHSRRSRERKKAQLEGLKQASIDLGPYRMLVEQAHDMISVHSANADAFFALASGAFYRQLGFEPTKLLGA--SLLDLVEPKDAQAVVQAIMDTLSRGGIKQASCVQYRMRPPSSADAIEVETSFRIASRRLLAITRI 1761
K +SRE+NRDHSR+SR RKK +E LK L Y+ + EQ D+I++ N DA F +S A+ R LG++ +L+ S LDLV P++ Q V + G K+ Q+R++ + ETS + + ++ TR+
Sbjct: 257 KEEKSRERNRDHSRKSRLRKKEFVESLKHEVSQLQIYQQICEQCLDLIAL--VNQDAIFMYSSAAYSRVLGYQGHQLIAGQTSFLDLVHPENVQEVRSVFQKFSALGESKK---FQFRIKSVEG-EYFRAETSACMTDKGVVCSTRV 397 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7968.16121.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7968.16121.1 >prot_E_fasciculatus_S2_contig7968.16121.1 ID=prot_E_fasciculatus_S2_contig7968.16121.1|Name=mRNA_E_fasciculatus_S2_contig7968.16121.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=600bp DSTNTRQPKTSPPPPPRSLLPTRASSWASSPTAKLYEAGAPHQRQLLQPKback to top mRNA from alignment at E_fasciculatus_S2_contig7968:3806..7068- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7968.16121.1 ID=mRNA_E_fasciculatus_S2_contig7968.16121.1|Name=mRNA_E_fasciculatus_S2_contig7968.16121.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3263bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7968:3806..7068- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7968:3806..7068- >mRNA_E_fasciculatus_S2_contig7968.16121.1 ID=mRNA_E_fasciculatus_S2_contig7968.16121.1|Name=mRNA_E_fasciculatus_S2_contig7968.16121.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1800bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7968:3806..7068- (Ectocarpus fasciculatus EfasUO2)back to top |