mRNA_E_fasciculatus_S2_contig7958.16114.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7958.16114.1
Unique NamemRNA_E_fasciculatus_S2_contig7958.16114.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7958.16114.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Z4_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 7.400e-22
Identity = 60/108 (55.56%), Postives = 63/108 (58.33%), Query Frame = 3 
Query:    3 VPGAGVARNGKRKAEHERHASASKKAMEAYYGHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFSSVDGRTSPSQQPGAWGAXXXXXXXXXXXXSVHFSPPEAHGFA 326
            VPGAGV+R+GKRKAEHER+ASASKKAMEAYYGH                             SEFSSVDGRTSPSQQPGAWG              VHFSP EAH FA
Sbjct:    2 VPGAGVSRHGKRKAEHERNASASKKAMEAYYGHAGHAGVAAGGGRSSGGDNSGEEATDDE--SEFSSVDGRTSPSQQPGAWGVAPPPQPGM----GVHFSP-EAHDFA 102
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7958.16114.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I8_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 3.530e-18
Identity = 56/106 (52.83%), Postives = 59/106 (55.66%), Query Frame = 3 
Query:    3 VPGAGVARNGKRKAEHERHASASKKAMEAYYGHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEFSSVDGRTSPSQQPGAWGAXXXXXXXXXXXXSVHFSPPEAHG 320
            VPGAGV R+GKRKAEHER+ASASKK MEAYYGH                             SEFSSVDGRTSP+QQPG WGA             V FSP EAHG
Sbjct:    2 VPGAGVVRHGKRKAEHERNASASKKVMEAYYGHAGHAGVVAGGGRSSGGDNSGEEATDDE--SEFSSVDGRTSPAQQPGTWGAAPRPQPGM----GVRFSP-EAHG 100
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7958.16114.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized7.400e-2255.56protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.530e-1852.83protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7958contigE_fasciculatus_S2_contig7958:3924..4337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size415
Hectar predicted targeting categoryother localisation
Exons1
Cds size414
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842456.0376852-CDS-E_fasciculatus_S2_contig7958:3923..43371696842456.0376852-CDS-E_fasciculatus_S2_contig7958:3923..4337Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7958 3924..4337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7958.16114.1prot_E_fasciculatus_S2_contig7958.16114.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7958 3924..4337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7958.16114.1

>prot_E_fasciculatus_S2_contig7958.16114.1 ID=prot_E_fasciculatus_S2_contig7958.16114.1|Name=mRNA_E_fasciculatus_S2_contig7958.16114.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=138bp
WCPGLVWPATGNERRSTSATPRPRRRRWRRTTATGGGFRPPPPPQAVPLG
AKTTAGKRQRTTRANFPRWTAEHPPRSNRAPGGRHLPSSSRGGWGAASTS
ARRRLTGLRQLLRRRRRQATCRRRTQLLGSRWWAVLV*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7958:3924..4337-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7958.16114.1 ID=mRNA_E_fasciculatus_S2_contig7958.16114.1|Name=mRNA_E_fasciculatus_S2_contig7958.16114.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=414bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7958:3924..4337- (Ectocarpus fasciculatus EfasUO2)
TGGTGCCCGGGGCTGGTGTGGCCCGCAACGGGAAACGAAAGGCGGAGCAC
GAGCGCCACGCCTCGGCCTCGAAGAAGGCGATGGAGGCGTACTACGGCCA
CGGGGGGGGGGTTTCGGCCGCCGCCGCCGCCGCAGGCCGTTCCTCTGGGG
GCGAAAACAACAGCGGGGAAGAGGCAACGGACGACGAGAGCGAATTTTCC
TCGGTGGACGGCAGAACATCCCCCTCGCAGCAACCGGGCGCCTGGGGGGC
GCCACCTCCCCAGCAGCAGCCGGGGGGGATGGGGGGCAGCGTCCACTTCA
GCCCGCCGGAGGCTCACGGGTTTGCGGCAGCTGCTGCGGCGGCGGCGGCG
GCAGGCCACATGCCGGCGGCGCACGCAGCTGCTGGGCAGCAGGTGGTGGG
CGGTGCTAGTCTAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7958:3924..4337-

>mRNA_E_fasciculatus_S2_contig7958.16114.1 ID=mRNA_E_fasciculatus_S2_contig7958.16114.1|Name=mRNA_E_fasciculatus_S2_contig7958.16114.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=414bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7958:3924..4337- (Ectocarpus fasciculatus EfasUO2)
TGGTGCCCGGGGCTGGTGTGGCCCGCAACGGGAAACGAAAGGCGGAGCAC
GAGCGCCACGCCTCGGCCTCGAAGAAGGCGATGGAGGCGTACTACGGCCA
CGGGGGGGGGGTTTCGGCCGCCGCCGCCGCCGCAGGCCGTTCCTCTGGGG
GCGAAAACAACAGCGGGGAAGAGGCAACGGACGACGAGAGCGAATTTTCC
TCGGTGGACGGCAGAACATCCCCCTCGCAGCAACCGGGCGCCTGGGGGGC
GCCACCTCCCCAGCAGCAGCCGGGGGGGATGGGGGGCAGCGTCCACTTCA
GCCCGCCGGAGGCTCACGGGTTTGCGGCAGCTGCTGCGGCGGCGGCGGCG
GCAGGCCACATGCCGGCGGCGCACGCAGCTGCTGGGCAGCAGGTGGTGGG
CGGTGCTAGTCTAG
back to top