mRNA_E_fasciculatus_S2_contig7948.16106.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7948.16106.1
Unique NamemRNA_E_fasciculatus_S2_contig7948.16106.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7948.16106.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY4_9PHAE)

HSP 1 Score: 284 bits (726), Expect = 8.470e-95
Identity = 168/229 (73.36%), Postives = 175/229 (76.42%), Query Frame = 1 
Query:    1 MGSVHRALPPLEGNRRC--QDEFGSSREDVPAGSSIVSSGGDALSDLHTKLAHIQWRRHANDKSIRKALETTKRLQERDMMLQLSVDREGERARWTEAIVRDELARPVEISEMFLKDWERREGETQKRQLKETKLHLKSLKRVERTVTSKRSSAITVQRPESRDVAEGRRGGERTLEKQQDDEALKERLRRLRFGVKEKRRDLRRSASYSKDQRGTFSATGFKTGRGRC 681
            MGSV+RALPPLEGNRRC  QDEFGSSRE+VP  S IVS  GDALSDLHTKLAHIQWRRHANDKSIRKALETTKRLQERDMMLQLSVDREGE                                         TKLHLKSLKRVERTVTSK+ SAIT QRPESRD AEGR GGER LE+Q+DDEALKERLRR+R GVKEKRR+LRRSASYSKDQRGTFSATGFKTGRGRC
Sbjct:    1 MGSVYRALPPLEGNRRCRPQDEFGSSRENVPPRSIIVSGSGDALSDLHTKLAHIQWRRHANDKSIRKALETTKRLQERDMMLQLSVDREGE-----------------------------------------TKLHLKSLKRVERTVTSKKCSAITAQRPESRD-AEGRGGGERALEQQEDDEALKERLRRVRVGVKEKRRELRRSASYSKDQRGTFSATGFKTGRGRC 187
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7948.16106.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized8.470e-9573.36protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7948contigE_fasciculatus_S2_contig7948:2416..4115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size684
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_010000.1
Cds size684
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842455.1297026-CDS-E_fasciculatus_S2_contig7948:2415..27121696842455.1297026-CDS-E_fasciculatus_S2_contig7948:2415..2712Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7948 2416..2712 -
1696842455.1564803-CDS-E_fasciculatus_S2_contig7948:2997..31201696842455.1564803-CDS-E_fasciculatus_S2_contig7948:2997..3120Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7948 2998..3120 -
1696842455.1829967-CDS-E_fasciculatus_S2_contig7948:3568..36411696842455.1829967-CDS-E_fasciculatus_S2_contig7948:3568..3641Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7948 3569..3641 -
1696842455.2040286-CDS-E_fasciculatus_S2_contig7948:3924..41151696842455.2040286-CDS-E_fasciculatus_S2_contig7948:3924..4115Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7948 3925..4115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7948.16106.1prot_E_fasciculatus_S2_contig7948.16106.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7948 2416..4115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7948.16106.1

>prot_E_fasciculatus_S2_contig7948.16106.1 ID=prot_E_fasciculatus_S2_contig7948.16106.1|Name=mRNA_E_fasciculatus_S2_contig7948.16106.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=228bp
MGSVHRALPPLEGNRRCQDEFGSSREDVPAGSSIVSSGGDALSDLHTKLA
HIQWRRHANDKSIRKALETTKRLQERDMMLQLSVDREGERARWTEAIVRD
ELARPVEISEMFLKDWERREGETQKRQLKETKLHLKSLKRVERTVTSKRS
SAITVQRPESRDVAEGRRGGERTLEKQQDDEALKERLRRLRFGVKEKRRD
LRRSASYSKDQRGTFSATGFKTGRGRC*
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mRNA from alignment at E_fasciculatus_S2_contig7948:2416..4115-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7948.16106.1 ID=mRNA_E_fasciculatus_S2_contig7948.16106.1|Name=mRNA_E_fasciculatus_S2_contig7948.16106.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1700bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7948:2416..4115- (Ectocarpus fasciculatus EfasUO2)
ATGGGTTCCGTTCATAGGGCTCTACCCCCTTTAGAAGGAAACCGCCGATG
TCAGGACGAGTTCGGTTCAAGCCGTGAGGATGTCCCAGCGGGATCAAGTA
TCGTGTCCAGTGGCGGGGATGCTTTGAGCGATCTCCATACCAAGTTGGCG
CATATCCAATGGCGAAGGCACGCGAATGATAAGAGCATAAGGTGAGGGCG
GTGATGTTCATATTACTCATGCTCGGCTGGCTGCTCGTATATCGCCGTGG
ACCGGACTGAGCACTGCTATACTGTCTATAGAAGTTTCCTGCTGCGCTAC
TCTACTGTAGATCCCGAAGCAAAGCATGTTGCAGCGTTGCAGTCGCAAGG
TACATCAGCAGGTGATTGTGACGTTCCGCGCCCCGGCTTGCGGTGCTGTG
CGATTCGGCGACAGAACGCAAGTGAACACGGTAACAGGTTGGTTCACTCC
GCCTGCCTGCCGTGTCGGTCACAGGAAGGCGCTCGAAACCACCAAACGGC
TGCAAGAGCGTGACATGATGCTTCAGCTCTCTGTCGATAGGGAAGGGGTG
AGCTCCATCGCAGATTGGTCGGTATAACTTGTCGTCATACTACTACAGTA
TCAACTTCGATACACCATATCCATCGATACGGAAGAAGATAGAGTTGGAC
GATGTGGTGTTTATTATCCCCGAATCAGGTCCGGAGCCGGCCCCGTCAGG
GAATGATCGTGTTGGTAACACCAACGCGACAAAACATCGCATTATACTTG
AAGCTGCAACTTACACGAAGAAAACTGTTCCCTAGAAAGATACCGGACTG
CTGCGCAAGAGCTAATGGGTATTGCTCTGATCTTGTAGAAAAAAACGGCC
GTCTGACAGGACGGGGTTCGTGTAAACTGATGGGGCAGGAAGTACACATC
CTTCGTAGGCAATTCCACGAACCTGCCAAATAGCTAACAAAGGAAACATG
TGACCGCTTTTTTCACCGATTGGTTTGACAAATGGCCTCGAATAGGAGAG
AGCGCGGTGGACGGAAGCCATCGTGAGAGACGAACTGGCGCGCCCAGTCG
AGATTAGCGAAATGTTTTTGAAGGATTGGGAACGGCGAGAAGGAGAGACC
CAAAAGAGGCAGCTCAAGGTACGTACTCTAGACCCCCGATTCGCAGTATA
TATTTTCTTTTCGCGTGTGGATACCATAGTTTCCCAAGCATCACAGCATT
GGGGCAATTGACGGTCATCATGACCCACATTAGGAACAAGGCCCATTCTG
ACTGATACGACTGCCGCGTTCCTACTGAAGTTCCTCTGCCAGAAGTATTC
GCCGCGAAGACAACCCTTGCCTACAATATGCTCGAGTTTTTATCATGAAA
AAGTAAAAGGATGTTCAACATCAAACCACCCGTCTTCTCCACTCGTGGTT
CAGGAGACGAAACTCCATCTAAAAAGCCTCAAGCGTGTGGAACGGACGGT
TACATCGAAGAGGAGTAGCGCCATCACCGTCCAGCGGCCTGAAAGCCGCG
ATGTTGCCGAGGGACGACGAGGAGGAGAGCGCACGTTGGAGAAGCAACAA
GACGACGAAGCCTTGAAGGAGAGGCTGCGGAGATTGCGCTTCGGGGTCAA
GGAGAAGCGCAGAGATCTTCGACGTAGCGCCTCCTACTCGAAAGATCAAA
GAGGAACTTTTAGCGCCACTGGCTTCAAGACTGGGCGCGGGCGATGCTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7948:2416..4115-

>mRNA_E_fasciculatus_S2_contig7948.16106.1 ID=mRNA_E_fasciculatus_S2_contig7948.16106.1|Name=mRNA_E_fasciculatus_S2_contig7948.16106.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=684bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7948:2416..4115- (Ectocarpus fasciculatus EfasUO2)
ATGGGTTCCGTTCATAGGGCTCTACCCCCTTTAGAAGGAAACCGCCGATG
TCAGGACGAGTTCGGTTCAAGCCGTGAGGATGTCCCAGCGGGATCAAGTA
TCGTGTCCAGTGGCGGGGATGCTTTGAGCGATCTCCATACCAAGTTGGCG
CATATCCAATGGCGAAGGCACGCGAATGATAAGAGCATAAGGAAGGCGCT
CGAAACCACCAAACGGCTGCAAGAGCGTGACATGATGCTTCAGCTCTCTG
TCGATAGGGAAGGGGAGAGAGCGCGGTGGACGGAAGCCATCGTGAGAGAC
GAACTGGCGCGCCCAGTCGAGATTAGCGAAATGTTTTTGAAGGATTGGGA
ACGGCGAGAAGGAGAGACCCAAAAGAGGCAGCTCAAGGAGACGAAACTCC
ATCTAAAAAGCCTCAAGCGTGTGGAACGGACGGTTACATCGAAGAGGAGT
AGCGCCATCACCGTCCAGCGGCCTGAAAGCCGCGATGTTGCCGAGGGACG
ACGAGGAGGAGAGCGCACGTTGGAGAAGCAACAAGACGACGAAGCCTTGA
AGGAGAGGCTGCGGAGATTGCGCTTCGGGGTCAAGGAGAAGCGCAGAGAT
CTTCGACGTAGCGCCTCCTACTCGAAAGATCAAAGAGGAACTTTTAGCGC
CACTGGCTTCAAGACTGGGCGCGGGCGATGCTAA
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