mRNA_E_fasciculatus_S2_contig7946.16103.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7946.16103.1
Unique NamemRNA_E_fasciculatus_S2_contig7946.16103.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7946.16103.1 vs.
Match: Uncharacterized (protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMI2_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 3.320e-41
Identity = 79/112 (70.54%), Postives = 79/112 (70.54%), Query Frame = 1 
Query:    1 GRRLGFPARKMGRSQGVRPHPREQWETMMRKHPRKKGEMLGIPARRVDRSHSVAWITTTTFGRKARRTAKETTIRLTVWMISGSTWTETCWWTTSLSYVNGGTHCVTHEDLP 336
            GRRLGFPARKMGRSQGVR                                HSVAWITTTTFGRKARRTAKETTIRLTVWMISGST TETCWWTTSLSYVNGGTHCVTHEDLP
Sbjct:   76 GRRLGFPARKMGRSQGVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSVAWITTTTFGRKARRTAKETTIRLTVWMISGSTSTETCWWTTSLSYVNGGTHCVTHEDLP 187
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7946.16103.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.320e-4170.54protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7946contigE_fasciculatus_S2_contig7946:276..1466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size517
Hectar predicted targeting categoryother localisation
Exons3
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842454.841645-UTR-E_fasciculatus_S2_contig7946:275..4531696842454.841645-UTR-E_fasciculatus_S2_contig7946:275..453Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7946 276..453 -
1696842454.9109955-UTR-E_fasciculatus_S2_contig7946:1436..14661696842454.9109955-UTR-E_fasciculatus_S2_contig7946:1436..1466Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7946 1437..1466 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842454.8618243-CDS-E_fasciculatus_S2_contig7946:453..4981696842454.8618243-CDS-E_fasciculatus_S2_contig7946:453..498Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7946 454..498 -
1696842454.8746915-CDS-E_fasciculatus_S2_contig7946:854..9831696842454.8746915-CDS-E_fasciculatus_S2_contig7946:854..983Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7946 855..983 -
1696842454.8932047-CDS-E_fasciculatus_S2_contig7946:1301..14361696842454.8932047-CDS-E_fasciculatus_S2_contig7946:1301..1436Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7946 1302..1436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7946.16103.1prot_E_fasciculatus_S2_contig7946.16103.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7946 454..1436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7946.16103.1

>prot_E_fasciculatus_S2_contig7946.16103.1 ID=prot_E_fasciculatus_S2_contig7946.16103.1|Name=mRNA_E_fasciculatus_S2_contig7946.16103.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=103bp
MGRSQGVRPHPREQWETMMRKHPRKKGEMLGIPARRVDRSHSVAWITTTT
FGRKARRTAKETTIRLTVWMISGSTWTETCWWTTSLSYVNGGTHCVTHED
LP*
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mRNA from alignment at E_fasciculatus_S2_contig7946:276..1466-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7946.16103.1 ID=mRNA_E_fasciculatus_S2_contig7946.16103.1|Name=mRNA_E_fasciculatus_S2_contig7946.16103.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1191bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7946:276..1466- (Ectocarpus fasciculatus EfasUO2)
GGGCGGAGGTTAGGCTTCCCAGCGAGGAAGATGGGTCGGAGTCAGGGGGT
CCGACCCCACCCGCGGGAGCAGTGGGAAACGATGATGAGGAAACACCCGA
GGAAGAAGGGGGAGATGTTGGGAATCCCGGCGAGGAGGGTGGATCGGAGT
CACAGCGTCGCTTGGGTGAGCGGCTGCGCTTGTGCATTGTTGACGGCGCC
GAGATATACATTCTACTTTGTTGATGTTGGCTACCCCTCAGGGGCCACCC
AAGCACCCGCATACCACAACACTGTCGTAAGGTTTCTTCTTCATACTTGT
ACTTTGCATGTTTGAGCAGCTGAATCCCGCCGAATTTACCTGACTGATCA
TCCTTTCCAAGACAACACAGTAGTATAGTGGGGACGGGAGAGACGTCATC
GCCTACTTGGTAAAATGCATTCCCGAAAAATGATACGAGGTACTACCGAG
CAACTTCTCCTGGCGCATTGATCGATTTCCTAGATAACTACGACGACGTT
TGGGAGGAAGGCTCGCAGGACAGCGAAGGAGACGACGATTCGCTTGACGG
TATGGATGATATCGGGATCGACCTGGACGGAGACTTGCTGGTGGACGACG
AGCCTTAGTTATGTGCGTTGGTATCCGACCGTCTATATAACGCCGTTAGT
TTGACGGCTTGTGCCTTGCGACAATTAAATTTAGCACATATCGTAGGAGA
GGCTTTCTGTGTGCCATGCGCAGAAAACACAGCCCGGTTCATCATATGCC
TCCCCTCCAACAAAAAAACGGTATATTGCACCAACAACACTTCGAAAATA
CAACGGGTAGCCCGCATTTTTTTTGGCGCCTTATGCGTCCCCCCCAGCAT
TGTCAGGGATACCATGGCATTAGCCCGGGTTTCGTTAGGCGTTTTTTCCG
CAAAACAGCTTACGCGAAGATTCCCCTTCCCGACTTTTCGGTGTCTCGTT
CCGATATTATTCTCGCAGGTGAATGGTGGAACCCATTGCGTGACCCACGA
AGATCTACCGTAACGGAGTGCAGCTGCATTCGGCTGTTGTGTTCTCCTCG
TAGAAATGAGAATTGCCACAAGTGGTTTTCGGCCATGTGGGTTTGCTACG
CAGCACAATTGCGTGTGTGTGGTACAGTCGAAGTCTACACTTCGGTGTCT
GCGTCTTTTTTTTTTGTGTGTGGTGCCAGGTTCAAAACAGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7946:276..1466-

>mRNA_E_fasciculatus_S2_contig7946.16103.1 ID=mRNA_E_fasciculatus_S2_contig7946.16103.1|Name=mRNA_E_fasciculatus_S2_contig7946.16103.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=309bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7946:276..1466- (Ectocarpus fasciculatus EfasUO2)
ATGGGTCGGAGTCAGGGGGTCCGACCCCACCCGCGGGAGCAGTGGGAAAC
GATGATGAGGAAACACCCGAGGAAGAAGGGGGAGATGTTGGGAATCCCGG
CGAGGAGGGTGGATCGGAGTCACAGCGTCGCTTGGATAACTACGACGACG
TTTGGGAGGAAGGCTCGCAGGACAGCGAAGGAGACGACGATTCGCTTGAC
GGTATGGATGATATCGGGATCGACCTGGACGGAGACTTGCTGGTGGACGA
CGAGCCTTAGTTATGTGAATGGTGGAACCCATTGCGTGACCCACGAAGAT
CTACCGTAA
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