mRNA_E_fasciculatus_S2_contig7941.16101.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7941.16101.1
Unique NamemRNA_E_fasciculatus_S2_contig7941.16101.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7941.16101.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK66_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 1.400e-72
Identity = 130/132 (98.48%), Postives = 132/132 (100.00%), Query Frame = 2 
Query:  830 GMGEGAAALKASAAGDDGMTAEERQRAEGLASIERSLAEVTAIQRQLGISVDEDEDEKDLEVTDTAWRGQAGLDVSDAANGSRDWSDLSARKGLAVGDAVALTMFAYVGRASHGMASFDLGVLLTALPFLIG 1225
            GMGEGAAALKASAAGDDGMTAEERQRAEGLASIERSLAEVTAIQRQLGISVDEDEDEKDLEVTDTAWRGQAGLDV+DAA+GSRDWSDLSARKGLAVGDAVALTMFAYVGRASHGMASFDLGVLLTALPFLIG
Sbjct:  129 GMGEGAAALKASAAGDDGMTAEERQRAEGLASIERSLAEVTAIQRQLGISVDEDEDEKDLEVTDTAWRGQAGLDVTDAADGSRDWSDLSARKGLAVGDAVALTMFAYVGRASHGMASFDLGVLLTALPFLIG 260
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BLAST of mRNA_E_fasciculatus_S2_contig7941.16101.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZN6_9STRA)

HSP 1 Score: 102 bits (253), Expect = 5.740e-21
Identity = 56/115 (48.70%), Postives = 79/115 (68.70%), Query Frame = 2 
Query:  893 EERQRAEGLASIERSLAEVTAIQRQLGIS----VDEDEDEKDLEVTDTAWRGQAGLDVSDAANGSRDWSDLSARKGLAVGDAVALTMFAYVGRASHGMASFDLGVLLTALPFLIG 1225
            EE++R + L  IE++LAEV  I+RQLG+S     +++E+E+++ +  T W GQAGLDVS+  N  R+WSDL+ R  L +GD   L +F+Y+GRASHG    D G+L TA PFL G
Sbjct:   66 EEQERLKNLRMIEKNLAEVEQIERQLGMSQQWNFEDEEEEEEIPIEKTQWSGQAGLDVSEPGN--RNWSDLATRPLLTLGDMATLVLFSYIGRASHGNPQVDWGLLGTAAPFLAG 178
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BLAST of mRNA_E_fasciculatus_S2_contig7941.16101.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH1_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 8.480e-20
Identity = 58/122 (47.54%), Postives = 80/122 (65.57%), Query Frame = 2 
Query:  893 EERQRAEGLASIERSLAEVTAIQRQL-----------GISVDEDEDEKDLEVTDTAWRGQAGLDVSDAANGSRDWSDLSARKGLAVGDAVALTMFAYVGRASHGMASFDLGVLLTALPFLIG 1225
            +E++R EGL SI+ SL EV   ++Q            G+S +E+EDE+++EV DTAW GQAG+DV+    GS+ W+D+S R GLA GD +ALT+FA +GR  H  +  D+ V  TALPF IG
Sbjct:   52 QEKKRLEGLRSIQASLDEVEMYEKQFRQQAAQQRTRRGLS-EEEEDEREIEVLDTAWSGQAGMDVT--VVGSKTWADISKRLGLAAGDVIALTVFASIGRGVHTGSGIDVEVFKTALPFYIG 170
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BLAST of mRNA_E_fasciculatus_S2_contig7941.16101.1 vs.
Match: Uncharacterized (protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIG6_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.590e-8
Identity = 48/127 (37.80%), Postives = 67/127 (52.76%), Query Frame = 2 
Query:  884 MTAEERQRAEGLASIER-------------SLAEVTAIQRQLGISVDEDEDEKDLEVTDTAWRGQAGLDVSDAANGSRDWSDLSARKGLAVGDAVALTMFAYVGRASH-GMASFDLGVLLTALPFLI 1222
            M+AEE++R +GL +  +              L    A   Q     D  +D +DL V +TAW GQAGLDV     G  +W D+ AR  LA+GD +   +FA VGR+ H G  S D+ V+ TA PF++
Sbjct:   90 MSAEEKKRLQGLRASYKLEDVLDFDGTNAEPLPSAPASPAQADPDYDPLDDAEDLAVAETAWSGQAGLDVRRV--GENNWKDVGARPLLALGDVLMFLLFASVGRSIHTGGLSLDVQVVQTAAPFIL 214
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BLAST of mRNA_E_fasciculatus_S2_contig7941.16101.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HX28_9ALVE)

HSP 1 Score: 62.8 bits (151), Expect = 3.290e-7
Identity = 42/106 (39.62%), Postives = 59/106 (55.66%), Query Frame = 2 
Query:  920 ASIERSLAEVTAIQRQLGISVDEDEDEKDLEVTDTAWRGQAGLDVSDAANGSRDWSDLSARKGLAVGDAVALTMFAYVGRASHGM----ASFDLGVLLTALPFLIG 1225
            A I    A+     ++ G   DED  + DLE  +T+W GQAG+D  +  +G+  W+ L  RK L  GD +AL +FA++GRASHG        +L V  TA PF+ G
Sbjct:  133 ARISMIQADADYFAKRAGWKADED-GQTDLEARETSWSGQAGMDEVENFDGA--WAALPKRKLLLAGDLLALYLFAFIGRASHGEDVSGGLLNLEVWQTAAPFIAG 235
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7941.16101.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized1.400e-7298.48protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK66... [more]
Hypothetical5.740e-2148.70protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Uncharacterized8.480e-2047.54protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized1.590e-837.80protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID... [more]
Uncharacterized3.290e-739.62protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7941contigE_fasciculatus_S2_contig7941:2402..6876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score135.6
Seed ortholog evalue2.1e-29
Seed eggNOG ortholog2880.D8LK66
Model size1225
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG free text desc.Protein of unknown function (DUF3054)
EggNOG OGs2CM8N@1,2QPMJ@2759
Ec32 ortholog descriptionProtein of unknown function DUF3054
Ec32 orthologEc-08_002930.1
Cds size483
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7941.16101.1prot_E_fasciculatus_S2_contig7941.16101.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7941 2402..4713 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842454.697212-CDS-E_fasciculatus_S2_contig7941:2401..26201696842454.697212-CDS-E_fasciculatus_S2_contig7941:2401..2620Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7941 2402..2620 +
1696842454.708173-CDS-E_fasciculatus_S2_contig7941:4151..42231696842454.708173-CDS-E_fasciculatus_S2_contig7941:4151..4223Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7941 4152..4223 +
1696842454.717627-CDS-E_fasciculatus_S2_contig7941:4521..47131696842454.717627-CDS-E_fasciculatus_S2_contig7941:4521..4713Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7941 4522..4713 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842454.7277365-UTR-E_fasciculatus_S2_contig7941:4713..51461696842454.7277365-UTR-E_fasciculatus_S2_contig7941:4713..5146Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7941 4714..5146 +
1696842454.740907-UTR-E_fasciculatus_S2_contig7941:5971..60671696842454.740907-UTR-E_fasciculatus_S2_contig7941:5971..6067Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7941 5972..6067 +
1696842454.754527-UTR-E_fasciculatus_S2_contig7941:6663..68761696842454.754527-UTR-E_fasciculatus_S2_contig7941:6663..6876Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7941 6664..6876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7941.16101.1

>prot_E_fasciculatus_S2_contig7941.16101.1 ID=prot_E_fasciculatus_S2_contig7941.16101.1|Name=mRNA_E_fasciculatus_S2_contig7941.16101.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=161bp
MRCPAVVLVVASAALPCARGFLRPSVVARRRAAGASSSGPADIMTTCVKP
SSQGGAAGVGRRGLFMMAEGRLTDGDLDNISLDPSTLDESELQRVEGIRA
IQSKMVEVDEKKLELRRAARKQKEAAQVHTPYSLRGEIFHRCSSSHHTRS
SVHKRPHVFV*
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mRNA from alignment at E_fasciculatus_S2_contig7941:2402..6876+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7941.16101.1 ID=mRNA_E_fasciculatus_S2_contig7941.16101.1|Name=mRNA_E_fasciculatus_S2_contig7941.16101.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4475bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7941:2402..6876+ (Ectocarpus fasciculatus EfasUO2)
ATGCGTTGCCCTGCCGTAGTGCTCGTCGTCGCCTCCGCTGCGCTTCCGTG
CGCGAGGGGGTTCCTGCGGCCGAGTGTCGTCGCCAGAAGGCGTGCAGCTG
GAGCCAGCAGCAGCGGCCCCGCCGACATCATGACTACTTGCGTCAAGCCG
AGCAGCCAAGGCGGAGCCGCTGGTGTTGGCCGGCGGGGCCTGTTCATGAT
GGCGGAAGGCAGGCTCACGGTAAGCGAGAGAGAGAGAGAGAGCGAAAGAG
CATACAAGCCGTTACCGTCAAGCGTGCCGGTCTTTTTTCTTTCTGTTTTG
CTCGCACACGCCAGGGACAAAATCCAGAGTATTTACGTAGAGAGCGTCCG
CATGAGCATGAAGTTGACATGATCTCTGGTGTAACAAGCCGGCTTGCCAT
CGGTTGACACTCTGGTTGATGTTATACTCTACTGATGGCGATTTTTGGTG
GGCAAGAGTAGTTCATGGTTGTTGGTCGATCATCGGTTGCTTTGCTCTAA
TGTCAACATTTAGAGCCATTTTTTTCTCCTAATTTGATTCGGTTGAACGA
GAACCGAGGATGAATGCGCATGTTTCCTTTGCGAGTTTGCGAGGGAACCA
TTCCTGCCATTTTTGGCCGGGCCAATAGCAAGCAGGTGTGCAAAGGTTGT
GTTGTAGTGATCAGGGATGCTGCACACAGAATCTGTTCGGGCCATTTTTT
ACTCCTAAATTTGATGCGGTTGAACGAGAACCGAGAATGAATGCGCATGT
TTTCTTTGCGAGAGCGCCATTTCCTGCCATTTTTGGCCGGGCCAACAGCA
AAGGCAGGTGTGCAACGTGCAAGGGTTGTATTATGTATTATTGTAATAGT
CAGGGATGCTGCACACAGAAATCTGTCACAAGGTCACGTACCCGGGAAAC
AGCAGCACGCCGTTGGCTGTGTGAAACGTGTATACACCTAGTGTTTGTGT
GCATACCTACCTTGCGAAGTCGGATTGTAGACTACGACATCCTGCATGAA
ACTCCAGCCAAGCGCGGAGGGTGAGGAGGCGGGGATGGAGGGCAACGCTT
CCCGCGTTTTTTGTGGAGAAAGTGCGTAGTGTTAGTGTTTGCATTCTGTT
CACTCCTGTAGTCGTTGAAGAAGCACGCATGGTACTCGGGGCGAGTTTGA
GTGGCACCTCCTTACCTCCTTTGGCACTACAGCAGTAGACCACTTGCTAT
CAAAGCCTGATTTACTTACAGAGGAACTGTTTGGTGTGCCGGGTGGTACA
CGGTACATCGATCGGCAAGGCCTTCGTAACCATGTGATGCAAGTGGCCGC
ACATGACCATTTAGTTCTAGGTTTGACAATTTTCAGCATTTATGCCACCG
ATCGCTCTCACGAGGTTGCCTGTCATGTCCTTTCGTCCCAGTGTTAGCGA
CACCTCTGGGCGCGTTTTGACGCAAACATAGCACGCCTCCGTTGACCCCG
GGGATGGAAAGCTATCGTCCCCCAAATCTCAAGGACGCTTCTCCGCGTCC
GAAGGGCACGTGAAAAACTTAGTCTATGAAAGTCCTCTACGCGCGGCTGA
CTGCGATTTTACGTACACGTTGACCAGTGTCGTTGTCTTGTACCTGCGTG
GCCGCATTCGTCCATGCCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTTCGTTAATGTTGACTGGTCTACTGCAATGCGCCCA
CGCCGGTACATACTGCGCATGTGGTTGTCCTGCTGTGTTCTGTCTTGCAG
GATGGCGATCTGGACAACATCAGCCTTGACCCTTCCACACTGGATGAGAG
CGAGCTACAGAGGGTCGAAGGGGTGAGCAAACAAAGCCAGCAGGCGATTG
TGTGGCCGTAAGTATGTATCCGTTTGAACCCTCGATGAAGAAGGCCGAAA
CTCCAACTTTTGTCAATACTCTGTAGATGCGGAGGCAAGCACGTGCAGTT
TGTTGAGGAGTGGGTATGGTCTGGTTGTGTCAACGGGCTGGCCTTTGTGT
CCCCATTGATATGTGACCCTACCCTTTCGCGCTCTCCTCCTGTTGGCGCG
CCTCTCCTCGTGCGTTATACGTGCGTGTTTCTGCCCGCCATGCTCCCCGC
CCCGCCCCCGCCGCCCCAAGATCCGTGCGATCCAATCGAAAATGGTGGAG
GTTGACGAGAAGAAGCTGGAGCTGAGGAGAGCAGCGAGGAAACAAAAAGA
GGCGGCGCAGGTACATACTCCATACTCCCTTCGTGGCGAAATTTTCCACC
GTTGTTCCTCCTCGCATCACACACGGAGTTCCGTGCATAAGAGACCCCAC
GTATTTGTCTGATTGATTGTTGCTGCGAACCCCCTCCCATAGAAAACGAC
CGCGATATATATATGTCATTCTCGCTTCTGCACCCGCCCGCACAAATTGT
CCCCCGCTTGCTTTGGTGCAAACCTGCTTGGCAGGCAGAAGCTACACGCC
ACGGCCGCGCGCATGCCAATAAATATGACCCCCCCCCCCCAACCAACCAT
ATAAGTATGTGAGGTCTATGGTCTAACGACTACGGCATGCATGATACTGA
GTACCCCCCCCCCCACCAAGGCTTGCAAAACATGCGTACGCCCCCCACAC
ACCCCGCCCCCACCCACCCCCCAACCCACCGATCGATCCAAACGCCGTCT
CCCAACAGGGTATGGGCGAAGGCGCCGCCGCTCTGAAGGCGTCTGCTGCT
GGGGACGACGGGATGACCGCGGAGGAGAGGCAACGAGCGGAAGGCGTGAG
TGTTTGTTTTCTCGGGGTTATTTTTCGCTGTAGCTGTGTCGGGTAGACAG
TGGCTTGTGGCTTCCACAATGAATATGAATGGTTTCATTTAGCATGTAGT
GTTTGGTGCTGTTTGATTCCATGTTTCTCGGTACATTGTTCTCTTTCTGC
TCGTGTATGGTCGAAGAGTAGACTTCGATACAGGCGGCACGACCGAACAC
CACTACAAGGTTGAGTTGAGTAAAGTGCCTTGTTTCGGCCCACGTTGCGC
TCGGGACTCATGCCGCTTCCAAATCGTTTGCATGTTTTGTTTTTTATGCT
CGTCGCGCAAAAGTACATACATCATCTTCGCTCGGAGGGTACATGACAAT
ACCAGCTCCCAGGAACAGAATGGTCTAACAGCAGGTAGCAACCGGCAGTG
TTGTCCGCTCGCACGTCTAGCTGCGCTATTCCTAGCGCTGATGCTCCCGA
CGTGCGAGGTAGACTCGATTAAGAATGATCAGCGTGCGTCTGTCTCGACC
AAGCACGCAGATATTCTCTACGCCATATAATTGAAATGCCTATTCTTCCA
ACTCCAATAAACACCAATTTCTGACTCTTCCCCCCTTTAGTAGGATCCGT
CAGAAATACTCGCTTTTTTTGCTCGTCGCGTAGAAGTACATACATCATCT
TCGCTCGGAAGGTAAATCGAGCTATGCAAATCTTACCATCCAAAGTCGCT
CCGTGTCTTGATTTCGTTTCGATCTCGCCGCCCGGCACGATTAATAAAAC
ACGGACAACAAACGAAAAACGTAACCGTCATGCTTTTTTGATGTGTGTGT
TTGTGTTTTTGTGTGTCTAGCTGGCGTCCATCGAGCGCAGCCTGGCGGAG
GTAACGGCCATCCAGAGGCAGCTCGGAATCAGCGTCGACGAGGATGAGGA
CGAGAAGGACCTCGAAGTGAGTCAGTCGCTTTGTGCTTTGTTCAAAGGGT
TTGACGGCAAGCAGTTGCTCAGGTTTTTTAAGGGTTTCTATGCGGACGAC
TTTTTGTTTTTTGGGTCTGGGTTGACGGTAACCTGTTGCTTACGGTTTAA
GGGGTTTGTATTACTTTTATGGTTTTTTTTTATGGGTTTTCGTTCAGGGC
AAGCGGCTGCTTCCGTTTTTAATTCCTGTTATTTTATTTTTTACGGATTG
GTGTTTTTTCCGCTCTTGGATGGGGTTGTCGAACGGATGGGGGTGTTGCA
TCACCCGTTAGTTTTTTTTTCGATCGAGAAAGGCTCGAGGCTACTCGCTG
GTCGATCACGACAAAAGCGGCGAGATTCCAAGGTGGATGTTGCTCTTGGA
GCCACTTCTAGTAAGACGGCAGCAAAAGAAATAGGCAACAACAGCAATAC
GCTCGAAACAAACAGCAGAGGCAGCGGCACCAACCAAGTCAACAGCAAAA
CCCCCCCATCACCACGCCACCAACAATACTCGTACCCACGTTTACCAAAA
TCACTCAAGTCCCCACCCCAGATAACCAACAAACACCTTTGACACGCCGA
CACTTGGGACAGGTGACGGACACCGCTTGGAGGGGACAAGCAGGCCTCGA
CGTCAGCGACGCCGCCAACGGTAGCCGGGACTGGTCGGACCTTTCCGCCC
GGAAGGGTCTCGCGGTCGGGGACGCGGTGGCACTGACGATGTTCGCCTAC
GTCGGACGCGCCAGCCACGGGATGGCTTCGTTCGACCTCGGGGTGCTGTT
GACGGCTCTTCCCTTCCTTATCGGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7941:2402..6876+

>mRNA_E_fasciculatus_S2_contig7941.16101.1 ID=mRNA_E_fasciculatus_S2_contig7941.16101.1|Name=mRNA_E_fasciculatus_S2_contig7941.16101.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=483bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7941:2402..6876+ (Ectocarpus fasciculatus EfasUO2)
ATGCGTTGCCCTGCCGTAGTGCTCGTCGTCGCCTCCGCTGCGCTTCCGTG
CGCGAGGGGGTTCCTGCGGCCGAGTGTCGTCGCCAGAAGGCGTGCAGCTG
GAGCCAGCAGCAGCGGCCCCGCCGACATCATGACTACTTGCGTCAAGCCG
AGCAGCCAAGGCGGAGCCGCTGGTGTTGGCCGGCGGGGCCTGTTCATGAT
GGCGGAAGGCAGGCTCACGGATGGCGATCTGGACAACATCAGCCTTGACC
CTTCCACACTGGATGAGAGCGAGCTACAGAGGGTCGAAGGGATCCGTGCG
ATCCAATCGAAAATGGTGGAGGTTGACGAGAAGAAGCTGGAGCTGAGGAG
AGCAGCGAGGAAACAAAAAGAGGCGGCGCAGGTACATACTCCATACTCCC
TTCGTGGCGAAATTTTCCACCGTTGTTCCTCCTCGCATCACACACGGAGT
TCCGTGCATAAGAGACCCCACGTATTTGTCTGA
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