mRNA_E_fasciculatus_S2_contig7929.16088.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7929.16088.1 vs.
Match: Mannuronan (C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA2_ECTSI) HSP 1 Score: 288 bits (736), Expect = 2.480e-95 Identity = 144/161 (89.44%), Postives = 154/161 (95.65%), Query Frame = 3
Query: 135 MEFRRRSATTSLGLAVLGLLAA---AAAQDTASPNDPISKPDCDSDMEVSIRYAGTTQRLYLESADGETRGGCVTLGQIWESRAGKGPLFAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDDGGDADELRLLSTSDTYINLRAHGGSLDFVGTKV 608
MEFRRRSAT+S GLA+LGLLA+ AAA DTASPNDPISKPDCDSD+EVSIRYAG T+RLYLESADGETRGGC TLGQ+WESRAGKGPL+AVDPDSGDVSET+TGTWLLTEELYVEDGITLKVYGTD+GGDADELRLLSTSDTYINLRA+GGSLDFVGTKV
Sbjct: 1 MEFRRRSATSSFGLALLGLLASTTPAAAADTASPNDPISKPDCDSDIEVSIRYAGNTKRLYLESADGETRGGCATLGQVWESRAGKGPLYAVDPDSGDVSETQTGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSDTYINLRAYGGSLDFVGTKV 161
BLAST of mRNA_E_fasciculatus_S2_contig7929.16088.1 vs.
Match: Mannuronan (C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 288 bits (738), Expect = 1.270e-92 Identity = 145/161 (90.06%), Postives = 154/161 (95.65%), Query Frame = 3
Query: 135 MEFRRRSATTSLGLAVLGLLAA---AAAQDTASPNDPISKPDCDSDMEVSIRYAGTTQRLYLESADGETRGGCVTLGQIWESRAGKGPLFAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDDGGDADELRLLSTSDTYINLRAHGGSLDFVGTKV 608
MEFRR+SAT+S GLA+LGLLA+ AAA DTASPNDPISKPDCDSD+EVSIRYAGTT+RLYLESADGETRGGC TLGQIWESRAGK PL+AVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTD+GGDADELRLLSTS+TYINLRAHGGSLDFVGTKV
Sbjct: 1 MEFRRKSATSSFGLALLGLLASTTPAAAADTASPNDPISKPDCDSDIEVSIRYAGTTKRLYLESADGETRGGCATLGQIWESRAGKAPLYAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSETYINLRAHGGSLDFVGTKV 161
BLAST of mRNA_E_fasciculatus_S2_contig7929.16088.1 vs.
Match: MEP5a (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE) HSP 1 Score: 265 bits (677), Expect = 1.410e-85 Identity = 137/161 (85.09%), Postives = 148/161 (91.93%), Query Frame = 3
Query: 135 MEFRRRSATTSLGLAVLGLLAA---AAAQDTASPNDPISKPDCDSDMEVSIRYAGTTQRLYLESADGETRGGCVTLGQIWESRAGKGPLFAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDDGGDADELRLLSTSDTYINLRAHGGSLDFVGTKV 608
MEFRR SAT+S LA+LGLLAA AAA DTASPNDPISKPDCDSD+ VSIRYA +T+RLYLESADGETRGGCVTLGQIWE+RAGK PL+AVDP+SG+ SE ETGTWLLTEELYVEDGITLKVYGT +GGDADELRLLST+DTYINLRAHGGSLDFVGTKV
Sbjct: 1 MEFRR-SATSSFCLALLGLLAATMRAAAADTASPNDPISKPDCDSDIAVSIRYASSTKRLYLESADGETRGGCVTLGQIWENRAGKAPLYAVDPESGNESENETGTWLLTEELYVEDGITLKVYGTGEGGDADELRLLSTTDTYINLRAHGGSLDFVGTKV 160
BLAST of mRNA_E_fasciculatus_S2_contig7929.16088.1 vs.
Match: Mannuronan (C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE) HSP 1 Score: 209 bits (531), Expect = 8.130e-62 Identity = 103/146 (70.55%), Postives = 123/146 (84.25%), Query Frame = 3
Query: 177 AVLGLLAA--AAAQDTASPNDPISKPDCDSDMEVSIRYAGTTQRLYLESADGETRGGCVTLGQIWESRAGKGPLFAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDDGGDADELRLLSTSDTYINLRAHGGSLDFVGTKV 608
A++G+LA AA +DT SPN+PI KP+CD + VSIRY+ +RLYLESAD +TRGGCVTL QIWE + G+ PL+AVD SGD+S++ TGTWLLTEEL+VEDGITLKV+GT GGDADELRLLSTSDT+INLRAHGGSLDF+ TKV
Sbjct: 9 ALVGILALKLAAGKDTKSPNEPIPKPECDESIAVSIRYSSVYERLYLESADSKTRGGCVTLEQIWEHQRGEAPLYAVDSKSGDISDSATGTWLLTEELFVEDGITLKVHGTSAGGDADELRLLSTSDTFINLRAHGGSLDFLSTKV 154
BLAST of mRNA_E_fasciculatus_S2_contig7929.16088.1 vs.
Match: Mannuronan (C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI) HSP 1 Score: 204 bits (520), Expect = 4.220e-60 Identity = 113/162 (69.75%), Postives = 126/162 (77.78%), Query Frame = 3
Query: 135 MEFRRRSATTSLGLAVLGLLAAAAAQDTASPNDPISKPDCD---SDMEVSIRYAGTTQRLYLESAD-GETRGGCVTLGQIWESRAGKGPLFAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDDGGDADELRLLSTSDTYINLRAHGGSLDFVGTKV 608
ME RR +A LA++GLLAA + SD+ VSIRYAGTT RLYLESAD G TRGGCVTLGQIWESRAGKGPL+AVDPDSG+VS + TGTWLLTEELYVEDGITLKVYG++ GGDADELRLLST++T+INLRAHGGSLDFV TKV
Sbjct: 1 MELRRSAA-----LALVGLLAATSTXXXXXXXXXXXXXXXXXXXSDIAVSIRYAGTTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKV 157
BLAST of mRNA_E_fasciculatus_S2_contig7929.16088.1 vs.
Match: Mannuronan (C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI) HSP 1 Score: 196 bits (499), Expect = 4.980e-58 Identity = 109/162 (67.28%), Postives = 124/162 (76.54%), Query Frame = 3
Query: 135 MEFRRRSATTSLGLAVLGLLAAAAAQDTASPNDPISKPDCDS---DMEVSIRYAGTTQRLYLESAD-GETRGGCVTLGQIWESRAGKGPLFAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDDGGDADELRLLSTSDTYINLRAHGGSLDFVGTKV 608
ME RR +A LA++GLLAA + D+ VSIRYA +T RLYLESAD G TRGGCVTLGQIWESRAGKGPL+AVDPDSG+VS + TGTWLLTEELYVEDGITL+VYG++ GGDADELRLLST++T+INLRAHGGSLDFV TKV
Sbjct: 1 MELRRSAA-----LALVGLLAATSTXXXXXXXXXXXXXXXXXXXXDIAVSIRYAESTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKV 157
BLAST of mRNA_E_fasciculatus_S2_contig7929.16088.1 vs.
Match: Mannuronan (C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE) HSP 1 Score: 191 bits (486), Expect = 3.930e-55 Identity = 102/155 (65.81%), Postives = 123/155 (79.35%), Query Frame = 3
Query: 153 SATTSLGLA-VLGLLAA--AAAQDTASPNDPISKPDCDSDMEVSIRYAGTTQRLYLESADGETRGGCVTLGQIWESRAGKGPLFAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDDGGDADELRLLSTSDTYINLRAHGGSLDFVGTKV 608
+ATT L A ++ LLAA A A +T+S N ISKP C S +VSIRY+ +++RLYLESADG+TRGGCVTL +IW+ G PL+AV P SGDVS + TGTWLLTE+LYVEDGITL+V+GT GG+A+ELRLLSTS +INLRAHGGSLDFV TKV
Sbjct: 3 TATTMLRTAAIVSLLAARGADAANTSSKNKAISKPSCKSSTKVSIRYSASSKRLYLESADGKTRGGCVTLEEIWKDLDGSAPLYAVKPSSGDVSSSATGTWLLTEDLYVEDGITLQVHGTSAGGNANELRLLSTSKDFINLRAHGGSLDFVSTKV 157
BLAST of mRNA_E_fasciculatus_S2_contig7929.16088.1 vs.
Match: Mannuronan (C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA) HSP 1 Score: 186 bits (472), Expect = 4.280e-53 Identity = 100/146 (68.49%), Postives = 112/146 (76.71%), Query Frame = 3
Query: 177 AVLGLLAA--AAAQDTASPNDPISKPDCDSDMEVSIRYAGTTQRLYLESADGETRGGCVTLGQIWESRAGKGPLFAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDDGGDADELRLLSTSDTYINLRAHGGSLDFVGTKV 608
AV+ LLAA A A +TAS N I+KP C S +VSIRY+ T++RLYLESADG TRGGCVTL IW G PL+AV P SGDVS + TGTWLLTE LYVEDGITL+V+G GG ADELRLLSTS +INLRAHGGSLDFV TKV
Sbjct: 9 AVMTLLAARGADAANTASRNKAIAKPSCKSSTKVSIRYSKTSKRLYLESADGNTRGGCVTLEDIWRDLDGGAPLYAVKPSSGDVSSSITGTWLLTESLYVEDGITLQVHGKSAGGKADELRLLSTSKDFINLRAHGGSLDFVSTKV 154
BLAST of mRNA_E_fasciculatus_S2_contig7929.16088.1 vs.
Match: Mannuronan (C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE) HSP 1 Score: 182 bits (463), Expect = 5.400e-52 Identity = 87/122 (71.31%), Postives = 102/122 (83.61%), Query Frame = 3
Query: 243 KPDCDSDMEVSIRYAGTTQRLYLESADGETRGGCVTLGQIWESRAGKGPLFAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDDGGDADELRLLSTSDTYINLRAHGGSLDFVGTKV 608
KPDCDS + VS+RY + RLY+ESA+G TRGGCVTL QIWE + PL+AVDP SGDVS + TGTWLLTEE+YVEDGITL+V+G GGDADELRLLSTSDT+I+LRA+GGSLDF+ TKV
Sbjct: 7 KPDCDSSIAVSVRYNAESARLYIESANGRTRGGCVTLEQIWEQQVDGSPLYAVDPKSGDVSRSATGTWLLTEEMYVEDGITLQVHGISAGGDADELRLLSTSDTFIHLRAYGGSLDFLSTKV 128
BLAST of mRNA_E_fasciculatus_S2_contig7929.16088.1 vs.
Match: Mannuronan (C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD45_ECTSI) HSP 1 Score: 169 bits (428), Expect = 5.100e-46 Identity = 91/145 (62.76%), Postives = 103/145 (71.03%), Query Frame = 3
Query: 213 DTASPNDPISKPDCDSDMEVSIRYAGTTQRLYLESADGETRGGCVTLGQIWESRAG------KGPLFAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDDGGDADELRLLST-------SDTYINLRAHGGSLDFVGTKV 608
DT SPN PI KP+C+S VSIRY+ TT RLYLE+ RGGCVT+ QIWE+R G K PL+AVDP SG+ S+ TGTWLL E+LYVEDGITLKV+G GG ADELRL ST + TYINLRAHGGSLDF TKV
Sbjct: 102 DTPSPNTPIPKPECNSTQAVSIRYSATTGRLYLEAGVEGERGGCVTVEQIWEARGGGTTTGAKAPLYAVDPVSGEYSDVITGTWLLEEDLYVEDGITLKVWGNGSGGYADELRLKSTPPTEDGGNGTYINLRAHGGSLDFEHTKV 246 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7929.16088.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7929.16088.1 >prot_E_fasciculatus_S2_contig7929.16088.1 ID=prot_E_fasciculatus_S2_contig7929.16088.1|Name=mRNA_E_fasciculatus_S2_contig7929.16088.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=158bp MEFRRRSATTSLGLAVLGLLAAAAAQDTASPNDPISKPDCDSDMEVSIRYback to top mRNA from alignment at E_fasciculatus_S2_contig7929:260..2203- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7929.16088.1 ID=mRNA_E_fasciculatus_S2_contig7929.16088.1|Name=mRNA_E_fasciculatus_S2_contig7929.16088.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1944bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7929:260..2203- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7929:260..2203- >mRNA_E_fasciculatus_S2_contig7929.16088.1 ID=mRNA_E_fasciculatus_S2_contig7929.16088.1|Name=mRNA_E_fasciculatus_S2_contig7929.16088.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=474bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7929:260..2203- (Ectocarpus fasciculatus EfasUO2)back to top |