mRNA_E_fasciculatus_S2_contig7927.16087.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7927.16087.1
Unique NamemRNA_E_fasciculatus_S2_contig7927.16087.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7927.16087.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFJ5_ECTSI)

HSP 1 Score: 441 bits (1134), Expect = 2.130e-151
Identity = 226/254 (88.98%), Postives = 235/254 (92.52%), Query Frame = 1 
Query:    1 GGGXXXXXXXXEEVEEEIDWPLSPTPLEDIKETRAEMAYADLQFIEERHKTNHTKWFWRNRSRALNEKAAIALVTPVLEDAYASGGVLEPVGTGFRKSCLSDEPGNNGTTVYRSKRRAAIEEIGFLTPKPVVYVANVPSEAAPSSDEEDNANDDAKSKEASESAEAIRKVALAHADRVVGLKRDYGVPAVVGCLRNPEGQNALGAAVFKAIPRDFLSRDPKLKKSANSPGRKTQQRTQQRRRPGVTKAPRTGGV 762
            GGG        EEVEEEIDWPLSPTPLEDIKETRAEMAYADLQFIEERHKTNHTKWFWRNR+RALNEKAAIALVTP+LEDAYASGGVLEPVGTGFR SCL DEPG NGTT+YRSKRRAAIEEIGFLTPKPVVYVANVPSEAAPSSDE+D+ANDDA+ KEASES EA+RKVALAHAD+VV LKRDYG P VVGCLRNPEGQNALGAAVFKAIPRDFLSRDPKL+KSANSP RKTQQRTQQRRRPG TKAPRTG V
Sbjct:  266 GGGVKQGGGDGEEVEEEIDWPLSPTPLEDIKETRAEMAYADLQFIEERHKTNHTKWFWRNRNRALNEKAAIALVTPLLEDAYASGGVLEPVGTGFRNSCLRDEPGENGTTLYRSKRRAAIEEIGFLTPKPVVYVANVPSEAAPSSDEDDDANDDAEPKEASESGEAVRKVALAHADKVVSLKRDYGAPVVVGCLRNPEGQNALGAAVFKAIPRDFLSRDPKLRKSANSPRRKTQQRTQQRRRPGETKAPRTGAV 519
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7927.16087.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.130e-15188.98protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFJ5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7927contigE_fasciculatus_S2_contig7927:5046..7049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size771
Hectar predicted targeting categoryother localisation
Exons4
Cds size771
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842453.3461127-CDS-E_fasciculatus_S2_contig7927:5045..51981696842453.3461127-CDS-E_fasciculatus_S2_contig7927:5045..5198Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7927 5046..5198 -
1696842453.3586743-CDS-E_fasciculatus_S2_contig7927:5735..59901696842453.3586743-CDS-E_fasciculatus_S2_contig7927:5735..5990Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7927 5736..5990 -
1696842453.3679843-CDS-E_fasciculatus_S2_contig7927:6326..65401696842453.3679843-CDS-E_fasciculatus_S2_contig7927:6326..6540Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7927 6327..6540 -
1696842453.3775737-CDS-E_fasciculatus_S2_contig7927:6900..70491696842453.3775737-CDS-E_fasciculatus_S2_contig7927:6900..7049Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7927 6901..7049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7927.16087.1prot_E_fasciculatus_S2_contig7927.16087.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7927 5046..7049 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7927.16087.1

>prot_E_fasciculatus_S2_contig7927.16087.1 ID=prot_E_fasciculatus_S2_contig7927.16087.1|Name=mRNA_E_fasciculatus_S2_contig7927.16087.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=257bp
GGGGGGGGGDGEEVEEEIDWPLSPTPLEDIKETRAEMAYADLQFIEERHK
TNHTKWFWRNRSRALNEKAAIALVTPVLEDAYASGGVLEPVGTGFRKSCL
SDEPGNNGTTVYRSKRRAAIEEIGFLTPKPVVYVANVPSEAAPSSDEEDN
ANDDAKSKEASESAEAIRKVALAHADRVVGLKRDYGVPAVVGCLRNPEGQ
NALGAAVFKAIPRDFLSRDPKLKKSANSPGRKTQQRTQQRRRPGVTKAPR
TGGVAV*
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mRNA from alignment at E_fasciculatus_S2_contig7927:5046..7049-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7927.16087.1 ID=mRNA_E_fasciculatus_S2_contig7927.16087.1|Name=mRNA_E_fasciculatus_S2_contig7927.16087.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2004bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7927:5046..7049- (Ectocarpus fasciculatus EfasUO2)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGATGGCGAGGAGGTAGAGGAGGA
GATCGACTGGCCGCTGTCTCCGACGCCGCTGGAGGACATCAAGGAAACGA
GGGCTGAAATGGCCTACGCCGACCTTCAGTTTATCGAGGAGAGGCACAAG
TAAGTCGGCAAAACCTCGCTGCCATGCCATTGACACAAAAATAGAACACG
GTAGGTACGTGCAAGTCCCTTTGTAAATGCAGAATGACGTCCAGTTGTTT
CGACGGAATTGGCAGCGTGTTCGATCCGGGCGTTCTTACGTCGGGGTTAG
GTTGGGGATGGAAACATACAAAAAGGTTTATCGTGCAACACGGCAAATAT
TCGCTTCCCGCAGCCGCGCTGGCAACGCACGCGTCCGAGCTTTGGATGTG
CCTTTATAAATTAGAAGTACATTCGCCTAGCAAGGCTCGCTTCTTGTAAC
CGTTGCCTCTCGTTCTTTCGCTGCCCCCCGGTACCTCCTCGCCTGTAACC
GTTGCCAAGAACGAACCACACGAAGTGGTTCTGGCGGAACCGGAGCCGCG
CCTTGAACGAAAAGGCCGCCATCGCGCTGGTGACACCGGTGCTGGAAGAC
GCCTACGCCAGCGGCGGCGTTCTTGAGCCCGTTGGAACCGGGTTCCGAAA
AAGCTGCTTGAGCGACGAGCCGGGAAACAACGGCACTACGGTCTACAGGA
GCAAGCGGAGGGCGGCGATTGAGGTATGAGCGAGGACTGTAATGCCTTGC
CCCGGTTGTCAGCCGAAACAGGGACGACGCCCTGCTCGCGTGGCCGGCGG
CGAGACGAGTCAGACTAGCTCATGACAGCATTTTCGCGAGAGTTAGATAA
CCGTCTGAACTTCTAAGCTTGTTTTGATAGCGAGCCGGGAAGCACTGTCA
ACTGTCCCATTCATGGACGCGTACCCCACAGGTCACGTATCGGCAGTTCA
CGACTCACTCGCATCGCCATGACGCCTTTTCCGCAACCTCTAAAGCGTGC
ACGCCCGTCTCTTCCCCTTGGCATCATGGTGCGACCACTGCTTCCCCGCA
CCGATGCAGGAGATTGGGTTCCTGACCCCCAAGCCCGTCGTTTACGTCGC
CAACGTGCCTTCGGAAGCGGCGCCTTCTAGCGATGAGGAGGATAACGCCA
ACGACGACGCTAAATCGAAAGAGGCATCCGAATCGGCGGAAGCCATCAGG
AAAGTGGCCCTCGCACACGCGGACAGGGTGGTCGGTCTCAAGCGCGACTA
CGGCGTGCCCGCCGTTGTGGGGTGCCTGAGAAATCCAGAAGGGCAGAACG
CTCTCGGAGCCGCGGTGAGATGCTTGGCTGGCATTGAGATTGTGGTTGCT
GCTGTTTTTATGTTTTTATGGAGGGTTTTGGTGAAACTGTGTCTTTGGTC
TTTCCAAAACTACCGTTGTTTTCTGCCGCATTTTACAAGTTGGCGGTCAC
CCTGAGCAGGTGTACAGTCGATGCAAAGTAGAGCATGGCTCAAAAACATG
GTGTAGACCAGCCAGCTTGCTGCGTGTAACACGTTCGAAAGTCTCTCTGC
CACGGACAACCCCCTGAGGCATCCATTTGGGAAGTCACTCCCATTCCAGC
ACAACAATGCTGTAGGTACAGCAAAGTCTGTGTACGAATATCACCGCCGC
AGGAGGAAAAGTGCCTATTTGTAGTTTCCAATGTAAAGTTTTCAGACTTA
TGCACGGATATGATCACCGATTGCTTTGCCTAGGTGGTTGCTGGAACAAG
ACTGTTCACTTCTACGTAAACAAATTACCGTTTGTCGTTTCTCCTTGTTG
TGTGCTTGCTCACACCTCTATCGGAACGCGAACGTCGGCTTCCGTGCGCA
GGTGTTCAAAGCCATCCCTCGGGACTTCCTGAGCCGCGATCCCAAGCTCA
AGAAGAGCGCAAACAGTCCAGGAAGGAAAACGCAACAGCGGACTCAACAG
CGGCGACGACCGGGTGTAACAAAGGCGCCTAGAACAGGAGGGGTAGCTGT
TTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7927:5046..7049-

>mRNA_E_fasciculatus_S2_contig7927.16087.1 ID=mRNA_E_fasciculatus_S2_contig7927.16087.1|Name=mRNA_E_fasciculatus_S2_contig7927.16087.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=771bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7927:5046..7049- (Ectocarpus fasciculatus EfasUO2)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGATGGCGAGGAGGTAGAGGAGGA
GATCGACTGGCCGCTGTCTCCGACGCCGCTGGAGGACATCAAGGAAACGA
GGGCTGAAATGGCCTACGCCGACCTTCAGTTTATCGAGGAGAGGCACAAA
ACGAACCACACGAAGTGGTTCTGGCGGAACCGGAGCCGCGCCTTGAACGA
AAAGGCCGCCATCGCGCTGGTGACACCGGTGCTGGAAGACGCCTACGCCA
GCGGCGGCGTTCTTGAGCCCGTTGGAACCGGGTTCCGAAAAAGCTGCTTG
AGCGACGAGCCGGGAAACAACGGCACTACGGTCTACAGGAGCAAGCGGAG
GGCGGCGATTGAGGAGATTGGGTTCCTGACCCCCAAGCCCGTCGTTTACG
TCGCCAACGTGCCTTCGGAAGCGGCGCCTTCTAGCGATGAGGAGGATAAC
GCCAACGACGACGCTAAATCGAAAGAGGCATCCGAATCGGCGGAAGCCAT
CAGGAAAGTGGCCCTCGCACACGCGGACAGGGTGGTCGGTCTCAAGCGCG
ACTACGGCGTGCCCGCCGTTGTGGGGTGCCTGAGAAATCCAGAAGGGCAG
AACGCTCTCGGAGCCGCGGTGTTCAAAGCCATCCCTCGGGACTTCCTGAG
CCGCGATCCCAAGCTCAAGAAGAGCGCAAACAGTCCAGGAAGGAAAACGC
AACAGCGGACTCAACAGCGGCGACGACCGGGTGTAACAAAGGCGCCTAGA
ACAGGAGGGGTAGCTGTTTAG
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