mRNA_E_fasciculatus_S2_contig7917.16083.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7917.16083.1
Unique NamemRNA_E_fasciculatus_S2_contig7917.16083.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7917.16083.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z1_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 2.060e-64
Identity = 100/107 (93.46%), Postives = 101/107 (94.39%), Query Frame = 1 
Query:    1 RNSGSPTEARTYRDIEAVCAWARKNVLQEGEDGSGKNKGHGLILYGQSVGSGPTCYLASDKSKGPFAGALGARQGDIRGRPRAVEEASLVGAG*GPQRHLRGEASPE 321
            R SGSPTEARTYRDIEAVCAWARKNVLQEGEDGSGKNKGHGLILYGQSVGSGPTCYLASDKSKGPFAGA+GARQGDIRGRPRAVEE  LVGAG GPQRHLRGE S E
Sbjct:  134 RASGSPTEARTYRDIEAVCAWARKNVLQEGEDGSGKNKGHGLILYGQSVGSGPTCYLASDKSKGPFAGAVGARQGDIRGRPRAVEETPLVGAGQGPQRHLRGETSSE 240
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BLAST of mRNA_E_fasciculatus_S2_contig7917.16083.1 vs.
Match: Hydrolase_4 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNT2_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.840e-37
Identity = 66/70 (94.29%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:    1 RNSGSPTEARTYRDIEAVCAWARKNVLQEGEDGSGKNKGHGLILYGQSVGSGPTCYLASDKSKGPFAGAL 210
            R SGSPTEARTYRDIEAVCAWARKNVLQEGEDGSGKNKGHGLILYGQSVGSGPTCYLASDKSKG FAG +
Sbjct:  188 RASGSPTEARTYRDIEAVCAWARKNVLQEGEDGSGKNKGHGLILYGQSVGSGPTCYLASDKSKGSFAGVV 257
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BLAST of mRNA_E_fasciculatus_S2_contig7917.16083.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H3C4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.050e-9
Identity = 23/35 (65.71%), Postives = 25/35 (71.43%), Query Frame = 2 
Query:  203 VPWEHGKGIYEAVPEPLRRRPWWVPDRGHNDICEG 307
            V   HG+ +Y A PE  RR PWWVPDRGHNDI EG
Sbjct:   73 VSCSHGEDLYNATPEEYRREPWWVPDRGHNDITEG 107
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BLAST of mRNA_E_fasciculatus_S2_contig7917.16083.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9I0E5_HETAK)

HSP 1 Score: 60.5 bits (145), Expect = 1.550e-8
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 2 
Query:  203 VPWEHGKGIYEAVPEPLRRRPWWVPDRGHNDICEG 307
            VP  HG+G++ AVP  L+R PWWVP++GHN+IC G
Sbjct:  235 VPCAHGQGLHAAVPRDLQREPWWVPEKGHNNICSG 269
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BLAST of mRNA_E_fasciculatus_S2_contig7917.16083.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWH1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.090e-8
Identity = 19/39 (48.72%), Postives = 27/39 (69.23%), Query Frame = 2 
Query:  203 VPWEHGKGIYEAVPEPLRRRPWWVPDRGHNDICEGRRHL 319
            V W HG  ++  +P+  R  PWWVP+RGHN+IC+G+  L
Sbjct:   68 VDWSHGVNLWNTIPDKFRVEPWWVPERGHNNICQGQTAL 106
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BLAST of mRNA_E_fasciculatus_S2_contig7917.16083.1 vs.
Match: Hypothetical (protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3R8T6_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.840e-8
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 2 
Query:  215 HGKGIYEAVPEPLRRRPWWVPDRGHNDICEGRRHL 319
            HG+ +YEA+ +  +R PWWVPDRGHNDI +G  HL
Sbjct:  376 HGRALYEALKDDCKREPWWVPDRGHNDIMDGGSHL 410
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BLAST of mRNA_E_fasciculatus_S2_contig7917.16083.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VG10_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.910e-8
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 2 
Query:  215 HGKGIYEAVPEPLRRRPWWVPDRGHNDICEGRRHL 319
            HG+ ++EAVPE  RR PWWV DRGHNDI EGR  L
Sbjct:  397 HGQRLHEAVPEDCRRPPWWVKDRGHNDITEGRSKL 431
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BLAST of mRNA_E_fasciculatus_S2_contig7917.16083.1 vs.
Match: Hypothetical (protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1USD1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 7.900e-7
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 2 
Query:  173 PRTSLRGPL--RVPWEHGKGIYEAVPEPLRRRPWWVPDRGHNDICEG 307
            P   + G L   V + HG+ ++E +PE  RR PWW+ DRGHNDI EG
Sbjct:  334 PTMVIHGKLDQEVAFHHGREMHENIPEEYRRDPWWIRDRGHNDITEG 380
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BLAST of mRNA_E_fasciculatus_S2_contig7917.16083.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z4K0_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.000e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 2 
Query:  215 HGKGIYEAVPEPLRRRPWWVPDRGHNDICEG 307
            HG  ++ AVP+ L+R PWWVPDRGHNDI EG
Sbjct:  381 HGIAMHAAVPDHLKRDPWWVPDRGHNDITEG 411
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BLAST of mRNA_E_fasciculatus_S2_contig7917.16083.1 vs.
Match: Predicted (protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y3S1_PHATC)

HSP 1 Score: 55.5 bits (132), Expect = 9.430e-7
Identity = 22/31 (70.97%), Postives = 23/31 (74.19%), Query Frame = 2 
Query:  215 HGKGIYEAVPEPLRRRPWWVPDRGHNDICEG 307
            HG  I+ AVPE  RR PWWV DRGHNDI EG
Sbjct:  247 HGMDIHNAVPEECRRDPWWVSDRGHNDIIEG 277
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7917.16083.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.060e-6493.46protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hydrolase_42.840e-3794.29domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Hypothetical2.050e-965.71protein (Fragment) n=1 Tax=Thalassionema nitzschio... [more]
Hypothetical1.550e-860.00protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical2.090e-848.72protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical4.840e-860.00protein n=4 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical4.910e-868.57protein n=1 Tax=Chaetoceros debilis TaxID=122233 R... [more]
Hypothetical7.900e-748.94protein n=1 Tax=Grammatophora oceanica TaxID=21045... [more]
Uncharacterized8.000e-767.74protein n=1 Tax=Pseudo-nitzschia multistriata TaxI... [more]
Predicted9.430e-770.97protein n=1 Tax=Phaeodactylum tricornutum (strain ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7917contigE_fasciculatus_S2_contig7917:5048..7016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score183.7
Seed ortholog evalue3.9e-44
Seed eggNOG ortholog2880.D7G4Z1
Model size321
KEGG koko:K10908,ko:K17890
KEGG Pathwayko04136,ko04138,ko04140,ko04621,map04136,map04138,map04140,map04621
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.palmitoyl-(protein) hydrolase activity
EggNOG OGsCOG1073@1,KOG1552@2759
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-28_001050.1
EC2.7.7.6
Cds size282
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842452.9418998-UTR-E_fasciculatus_S2_contig7917:5047..50861696842452.9418998-UTR-E_fasciculatus_S2_contig7917:5047..5086Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7917 5048..5086 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842452.9587917-CDS-E_fasciculatus_S2_contig7917:5086..51661696842452.9587917-CDS-E_fasciculatus_S2_contig7917:5086..5166Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7917 5087..5166 -
1696842452.9695032-CDS-E_fasciculatus_S2_contig7917:6080..61681696842452.9695032-CDS-E_fasciculatus_S2_contig7917:6080..6168Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7917 6081..6168 -
1696842452.9795575-CDS-E_fasciculatus_S2_contig7917:6902..70161696842452.9795575-CDS-E_fasciculatus_S2_contig7917:6902..7016Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7917 6903..7016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7917.16083.1prot_E_fasciculatus_S2_contig7917.16083.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7917 5087..7016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7917.16083.1

>prot_E_fasciculatus_S2_contig7917.16083.1 ID=prot_E_fasciculatus_S2_contig7917.16083.1|Name=mRNA_E_fasciculatus_S2_contig7917.16083.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=94bp
RNSGSPTEARTYRDIEAVCAWARKNVLQEGEDGSGKNKGHGLILYGQSVG
SGPTCYLASDKSKGPFAGALGARQGDIRGRPRAVEEASLVGAG*
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mRNA from alignment at E_fasciculatus_S2_contig7917:5048..7016-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7917.16083.1 ID=mRNA_E_fasciculatus_S2_contig7917.16083.1|Name=mRNA_E_fasciculatus_S2_contig7917.16083.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1969bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7917:5048..7016- (Ectocarpus fasciculatus EfasUO2)
CGAAACAGCGGTTCTCCGACGGAGGCCCGGACGTACAGAGATATAGAGGC
GGTGTGTGCGTGGGCGCGAAAAAACGTGCTGCAGGAGGGAGAAGACGGCA
GCGGGAAAAACAAGGTGAAGAATTTATGCGTTATGTTGAGATTCGAACAA
AACCTCACAAGGATCCAAGCTGGATACGATGTGCGACATATGTGGGACGT
GAGCCCGTATTTTGTATTTTCCCGCGTTAGGCAAATAAAGCTGTGATCAG
TAAGATCAGGGTTAACGCTTGGGACGTCGTATTCACGTCCGGCGACCCGT
CGGTACAGTCGGCGGTGTTTTTCTGTTCAAAGCGTGTGCTCCTCCCCTTA
TACCACCCTTCCCCGCGGCGGTTTTCAGTGCGTGAGATTGACGGTGGCCA
CAACGAGAGGAAAACTGAACGGGGTATGGTGGCATGTGTAGAAAAGATTA
AACACGGAATTGCTCTGTGAGTCGAAGCGCAAGAACAATCACCGACAAAG
TCGAAGACGTCTGCATCAGTGGTGGAGACCCCTGGCTCTGTCCTGAAGGG
GATCGAGCGTGGTTGGTGGCCAGATGCGTGAAACCGAAAATCCAACCACC
GACTTCATCCCCGCTTGATGTGCGCGAGGTTCAACAACAACTTCGCGAAA
CAGGAGCTGCAAGGCAACATATTTAGCTTCCCCGTGGTCTAAACGTATGG
AGTAATCGCTAAGCCATGCAAAACATGAGTACGCCTCCCCCCCCTCCCGC
GCGCTTTGATGCATGCATGCATGCCCCATATCTATCTGATGACGTTTTTT
ATGCGGCGATCTTTACGAAATGGGAAACCTTTTCCCTTGCTCATTCAGGG
GCATGGTTTGATTCTGTACGGCCAAAGCGTCGGAAGTGGACCTACCTGCT
ACCTGGCCTCGGACAAGTCTAAGGGGCCCTTTGCGGGTGAGAGGGACGCA
CGCGTCTGCTTTTTTGCCGTGCTTGCTTGATATGTGTTTGTATGTGAATC
AGCATCGAACGTGCTGCAGTAGTCGTCCACTGTTGTTGTGCATGGTGTTG
GTTCGTCTTGGGACTGATGTCTTGCTGCAGTAGTCGTCCACTGTTGTTGT
GTTTTGTCTCCTTACCGCAAAGAACATAGCCAACAAGGATGAGCCAGGCT
TTTGTTGGTGCTGCACAGCGCACAATCCTTGCCTTGATGGACGATTTTGT
TATTTGCCTTCATTTCTCCATTTATGTCTCTCCTTCTCTCTTTACGTGCG
TGTCTCTCCCTTGTCTCTCTTCGGGCAACCAGGCGTGGTGCTGCACAGCC
CCATCCTGAGCGGCATGCGCGTCCTGACGGAGAGTCGAGCGCTTTCGTGC
CTCGACATCTACCCGAACGTAGACAGGGCGTCTCGGATGACTTGCCCGGT
GATGGTGATGCACGGAGCGAGGGACGAAGAGGTGAGTGCTCGCCTTTTTC
CTTGTCACGCTTCGTTGTCCTCGTGAGGGCACACGATAGGACATAGTATT
CGTTGTCCTGTTGAGAACACACGATAATGGATGGAGTTTGTTTTGTGCAA
GGGCAAATTAAAAGGAAACACGATATGTATACAGGGCATGCGTTGTCCTG
GTCAGAACACACTAAAGTTCACTAGTCGATGAAGGCTTTTTGTGCAAGGG
CAAACAAATTGTTTATTGTTATTAGCCTAGCATGAAGCAGGGCCGTGAGG
CATTTCTGTTCGAAACCGGTAGCGAGCGAGCTACGGCGTGACCGCCGGTT
CAATGCGATGAAACACCCCAAAAAGCAGCGTCTCAATGTCGTCCAAAAGT
TGACTGTTGCACGGCGTGCCGTTTCCTCGCGTTATCTTCTTGCGTCTCAG
GTGCCCTGGGAGCACGGCAAGGGGATATACGAGGCCGTCCCCGAGCCGTT
GAGGAGGCGTCCCTGGTGGGTGCCGGATAGGGGCCACAACGACATCTGCG
AGGGGAGGCGTCACCTGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7917:5048..7016-

>mRNA_E_fasciculatus_S2_contig7917.16083.1 ID=mRNA_E_fasciculatus_S2_contig7917.16083.1|Name=mRNA_E_fasciculatus_S2_contig7917.16083.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=282bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7917:5048..7016- (Ectocarpus fasciculatus EfasUO2)
CGAAACAGCGGTTCTCCGACGGAGGCCCGGACGTACAGAGATATAGAGGC
GGTGTGTGCGTGGGCGCGAAAAAACGTGCTGCAGGAGGGAGAAGACGGCA
GCGGGAAAAACAAGGGGCATGGTTTGATTCTGTACGGCCAAAGCGTCGGA
AGTGGACCTACCTGCTACCTGGCCTCGGACAAGTCTAAGGGGCCCTTTGC
GGGTGCCCTGGGAGCACGGCAAGGGGATATACGAGGCCGTCCCCGAGCCG
TTGAGGAGGCGTCCCTGGTGGGTGCCGGATAG
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