mRNA_E_fasciculatus_S2_contig7911.16078.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7911.16078.1
Unique NamemRNA_E_fasciculatus_S2_contig7911.16078.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7911.16078.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBM8_ECTSI)

HSP 1 Score: 320 bits (819), Expect = 2.200e-102
Identity = 233/445 (52.36%), Postives = 242/445 (54.38%), Query Frame = 1 
Query:    1 MFSFLNLQNFNFDFVGGGGDYIPNXXXXXXXXXXXXXXXXXGKRESGKQLWLWESHGSSSSPTADDSTANMTPRTEPVVTPPPKRAPLDCPAARAETTERAKXXXXXXXXXXXXXXXXXXXXXXXSVFFKLPDLDKILKGEDTNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-IGG-GGDFGHSLASKLSRPVSGRRRGRRASVAPGGSSPGRTRADRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDRPRDQKRPSPRSSPRALSAGHRRESCRDGRVISRAPKGLSAARLLEDAQDVARIRSQASLRAKMEGVCWIASNWCVGGRKGVLSGKRFLVLCDNIVWAELREADRRCSIAAGSVVSSGA-QGGATRKQ 1326
            MFSFLNLQNFNFDFVG   D IPN                 GKRESGKQLWLWESHGSSSS    +STANMTPRTEPVVTPPPKRAPLDCPAAR   TERAK                       SVFF+LPDLDKILKG++ NS     XXX                       +GG GGDFGHSLA+KLSRPVSGRRRGRRASVAPGGSSPGRTRADRLA   XXXXXXXXXXX                                                                                                      RESCRDGRVISR PKGLSAARLLEDAQDVARIRSQA LR+KMEG CWIASNWCVG  KG  S K FL LCDN  WAELR+ADRRCSIAAGS +S G  QGG TRKQ
Sbjct:    1 MFSFLNLQNFNFDFVG---DSIPNSGRTGKKKTSSSN----GKRESGKQLWLWESHGSSSSSPTANSTANMTPRTEPVVTPPPKRAPLDCPAARRPETERAKRRSLSQQSAVRNNTNEHRRS---SVFFRLPDLDKILKGDNANSSSSAEXXXAGRKKDGRRASRSANGGKGHHQGMGGDGGDFGHSLAAKLSRPVSGRRRGRRASVAPGGSSPGRTRADRLAAAEXXXXXXXXXXXEKST--------------------------------------------------------------------------------------------------RESCRDGRVISRTPKGLSAARLLEDAQDVARIRSQAGLRSKMEGFCWIASNWCVGALKGFFSAKSFLFLCDNFFWAELRKADRRCSIAAGSFLSGGGGQGGTTRKQ 337
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BLAST of mRNA_E_fasciculatus_S2_contig7911.16078.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8D2_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 1.640e-51
Identity = 133/223 (59.64%), Postives = 139/223 (62.33%), Query Frame = 1 
Query:    1 MFSFLNLQNFNFDFVGGGGDYIPNXXXXXXXXXXXXXXXXXGKRESGKQLWLWESHGSSSSPTADDSTANMTPRTEPVVTPPPKRAPLDCPAARAETTERAKXXXXXXXXXXXXXXXXXXXXXXXSVFFKLPDLDKILKGEDTNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-IGGG-GDFGHSLASKLSRPVSGRRRGRRASVAPGGSSPGRTRADRLA 663
            MFSFLNLQNFNFDFVG   D I N                 GKRESGKQLWLWESHGSSSS    +S     PRTEPVVTPPPKRAPLDCPAAR ET ERAK            XXXXXXX    SVFF+LPDLDKILKG++ NS                               +GGG GDFG SLA+KLSRPVSGRRRGRRASVAPGGSSPGRTR DRLA
Sbjct:    1 MFSFLNLQNFNFDFVG---DSISNSGRTGKKKTSSSN----GKRESGKQLWLWESHGSSSSSPTANSXXXXXPRTEPVVTPPPKRAPLDCPAARPET-ERAKRRSLSQQSAVRNXXXXXXXS---SVFFRLPDLDKILKGDNANSSSSAEAVAGGSKKDVRSASRSVTGSKGHHQGMGGGDGDFGQSLAAKLSRPVSGRRRGRRASVAPGGSSPGRTREDRLA 212
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7911.16078.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.200e-10252.36protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.640e-5159.64protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7911contigE_fasciculatus_S2_contig7911:591..4299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size1326
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_003380.1
Cds size1326
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842452.6446512-CDS-E_fasciculatus_S2_contig7911:590..9061696842452.6446512-CDS-E_fasciculatus_S2_contig7911:590..906Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7911 591..906 -
1696842452.65527-CDS-E_fasciculatus_S2_contig7911:3289..42991696842452.65527-CDS-E_fasciculatus_S2_contig7911:3289..4299Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7911 3290..4299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7911.16078.1prot_E_fasciculatus_S2_contig7911.16078.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7911 591..4299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7911.16078.1

>prot_E_fasciculatus_S2_contig7911.16078.1 ID=prot_E_fasciculatus_S2_contig7911.16078.1|Name=mRNA_E_fasciculatus_S2_contig7911.16078.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=442bp
MFSFLNLQNFNFDFVGGGGDYIPNSGGGGRTGKKKTTSSSNGKRESGKQL
WLWESHGSSSSPTADDSTANMTPRTEPVVTPPPKRAPLDCPAARAETTER
AKRRFSSQQQQQQRAVRNNREQRRSSVFFKLPDLDKILKGEDTNSSSEAA
GGSRKKEGRRTSRNANGGKSHHHQGIGGGGDFGHSLASKLSRPVSGRRRG
RRASVAPGGSSPGRTRADRLAAAAAEEEAAARDAAAAAERSTCALDEESR
EQGSAAAAAGEGPPLFESKRDTLLVTVGEEEEVLVLAAGAAAGAAAAAAA
APDGDAVQQQQQQDDRPRDQKRPSPRSSPRALSAGHRRESCRDGRVISRA
PKGLSAARLLEDAQDVARIRSQASLRAKMEGVCWIASNWCVGGRKGVLSG
KRFLVLCDNIVWAELREADRRCSIAAGSVVSSGAQGGATRKQ
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mRNA from alignment at E_fasciculatus_S2_contig7911:591..4299-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7911.16078.1 ID=mRNA_E_fasciculatus_S2_contig7911.16078.1|Name=mRNA_E_fasciculatus_S2_contig7911.16078.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3709bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7911:591..4299- (Ectocarpus fasciculatus EfasUO2)
ATGTTCTCTTTCCTAAACCTCCAGAATTTTAACTTCGATTTCGTCGGAGG
AGGAGGAGACTACATCCCCAACAGCGGCGGCGGCGGGCGCACTGGCAAGA
AGAAGACCACCAGCAGCAGCAATGGCAAGAGAGAGTCCGGCAAGCAGCTC
TGGCTCTGGGAGTCGCACGGCTCCTCCTCCTCGCCGACAGCCGACGACAG
CACTGCCAACATGACCCCGAGGACCGAGCCGGTCGTCACCCCGCCCCCGA
AGCGGGCGCCGTTGGATTGTCCCGCGGCTCGCGCGGAGACAACGGAGAGG
GCCAAGCGGCGCTTCTCCTCGCAACAGCAGCAGCAGCAGAGAGCCGTGCG
CAACAACAGAGAACAACGGCGCTCGTCCGTGTTCTTCAAGCTGCCGGACC
TCGACAAGATCCTCAAGGGTGAAGACACCAACAGCAGCTCAGAGGCCGCC
GGCGGCAGCAGGAAGAAGGAAGGGCGGCGCACCAGCAGGAACGCCAACGG
CGGCAAGAGCCACCATCACCAGGGCATCGGCGGCGGCGGCGACTTCGGGC
ACAGCCTCGCGTCCAAGCTCAGCCGGCCCGTTTCGGGCCGCAGGCGCGGC
CGCCGAGCGTCCGTTGCGCCCGGCGGCTCTTCGCCCGGGCGGACGAGAGC
GGATCGCTTAGCGGCGGCTGCAGCGGAAGAAGAAGCAGCAGCAAGGGACG
CCGCGGCGGCGGCGGAGAGGTCAACGTGCGCGTTGGATGAAGAGTCTCGA
GAACAAGGTTCAGCGGCGGCGGCGGCGGGAGAAGGGCCACCGTTGTTCGA
ATCGAAACGCGACACGCTGCTGGTGACCGTTGGGGAGGAGGAGGAGGTGC
TGGTGCTGGCTGCTGGTGCTGCTGCTGGTGCTGCTGCTGCTGCTGCTGCT
GCACCCGACGGTGATGCTGTCCAGCAGCAGCAGCAACAGGATGATCGCCC
GAGGGATCAAAAGCGACCGTCCCCAAGATCTTCGCCGAGAGCTCTCAGCG
CCGGCCACAGGTATTTAGATTTTTGTATTCTATTCTATGAGCATGATGTT
TCCATGTGTCTCTTTGTCATGGTTCATGCGTCATCTACTTGTAAATAGTC
CACTTGTCGGAACTTATAGTAAATAGTCTACTGCTGCTGTAGTCCACCTG
TCGGAAATCTGGGATCTTTCTTTTGTAGTCTACACTACGAGCATGATTGC
GCATTTTACATAGTAGTAGTAGACGTCACCTCTCGGAATCTTGAATCTTG
AGCGTACAATGGATGGTGCATGCTCGCACTAACCCTCACTTTACCTTGCG
CATCTGCTTGTAGTTTGCATGTCGTATTCCTTGCATGGTGACATAGCTGA
CCCTGCTGTAGTTGCAGTTTTTACGTACATATGCATAAAAACAAAACGGT
TTTGCTTTCCTCTTCGAAATCGTAATCGTTCGTCTGTTTCACATGCACCC
GATGATTCTTCGATTCCTTCCGTGTAAAGAATCTTTTCCCCGAATTTCCG
TCTTCTTGCACGATGCTGGCTGGTGGCCTTGTTGTCGTCGCATGCATGCA
AACAAGCATGCATGCACGAGAGAAAAAACAGACAATTTTGAGCGGACCTA
TTGTAACTGCTGCCCATATGCATACTGGATTCCGGTGTTTTGGTGTCTGG
CTGTTGCTGCTGCAGGTGCAAAATTAGATTACCTTCCTATATCCGGAAGT
GAGTGTCGTCCGTTGCACAACTACCTGCCAGTACATCATGTGCATACCTC
TAGAAGTATTTTGTATTTTGTATTTTGCATGCGAAATCCCGTCGGCAATA
AAAAAATGTTGTATGCATCGTACAACGGTCGTTGTCGTCGCGTCATGGAC
GGGTGAATGGATGAACTGGCTTTCCCCGCATTCGAGATCGCGTTTTCATG
CGTTCAATGCACACGATGTGAAACAACAAGAGCGCTTGTTCGTGCGTACA
GCAGTGTGTGCATTGGTTCTTCTCTCTTGCTTGAGAGGAGAGAAGGACGG
CTGAACCATAACCTGTCATTCCTCGCGTAAGGCTCGCGCGTCGGAAATAG
TTCTTTTTGTGTGACCCTCCTGGGTCGGAGCTCTTCGGCTACATCAGCAG
AGGCGATGGTGTGGCATTTGATCTGGGCTTCCATTTCATTATTCAACAGG
TTTGTCTGGACGTCGCTCCAGCTCCTCCCATAGCTCTTTCAGCTGTTGTT
GCATGACGAGTTCCAGCTGCGAATTCATGCAGCAACAGCCGAAATGAGCT
TGCCGAGAAGCTGGGAGCAGCGTGGAGATGACCGTTAAATGTTGTAGCAT
GTGCATATGCGATATGCACACAACGGCAATGACACGGTCGTTGTTGTTTG
TGCCATGGACGGGTGAATGGATGGACTGGCTTCCCCACATTCGAGATCGC
GCGTTCATGCGTTCAATGCACACGATTTGCGCTTGAGAGGAGAGAAGGAC
GGCTAACCCACAACCAGTCATTCTCGCGTAAGGCCCGCGCCTCGTAAATG
TTTCTTTTTTGTGTGACCCTCACCCATCGGAGCCTTTCAGCTACGTCACA
AGCGATGGTGACGTCGGTCGATCTGGGCTTTTCATTTTTCATTCGCCCGC
ACCCCGCGGTTTTCGTCTTCACGTCGCTCAAGCTCCTCCGATAATTCTTT
CAGCTGTTATTGCATGATGCCTTCCATCTGCGAAGCCATGCAGCAGCAGC
CGAAAGAGCTTGTCGAGAAGCTGGAGCAGCATGAAGACGAAAAACCGCGG
GGTGTGGGTTGATCAAAATGGAGGGCCCCGATCGACGACCTACATGCACC
TCACCATCAGCAGTCTCGGCGGCGCATGCATGGCCATCATTGCATGGCCA
CAGGATAGTTGGTACGGCAGTAACTTGGGACTTGGAACTTGGAGCGGCAT
CAGTCATCGTTCCGTCTTGTACTCCTCCCACGAATCACAAGAGTCCGATA
CATGAGGCCACCAAACCGTCTCGTCTCGTAAGGTTGCTACGTGACCCACA
GCGGACAATGTCACTGCTGCTTGACACGCCAGTATCAAGTAGACCGCTTT
TTTACCCCACTGCGAACTATTTATTAATACCTTATCCTGGACGCGCTGTC
TATCTACGGGCCGAGAGGGATCGTTTGGCACGACCATTTGGACATTTGCA
CTCGAGAAGACTGCTTCTGCTGCTCTATTGTATGTATTATGTATGCTCCT
TCCCTCGAAGAGCACAGCCATACAAATACCCTTACGCTACGACCATCGTC
GTGAACAGACTCCCTGTTAATCCTATGTACCATGATAATCCCCCCAACCA
TTGACTTAAAAATCAACTAATTATGTAATTCACTGGTATCCTTCCCTATT
AACTCCACCCCCATCCCCCCACCCCCCCTCCCAAACAAAACAGGCGCGAG
TCGTGCCGCGACGGTCGAGTCATCAGCCGCGCGCCCAAGGGCCTCTCCGC
CGCGCGCCTGCTCGAGGACGCCCAGGACGTGGCCCGCATCCGCAGCCAGG
CCAGCCTCCGCGCCAAGATGGAGGGGGTCTGCTGGATCGCGAGCAACTGG
TGCGTGGGCGGCCGGAAGGGGGTCCTCAGCGGCAAGAGGTTCCTGGTCCT
GTGCGACAACATCGTCTGGGCCGAGCTGCGCGAGGCCGACCGCCGTTGCA
GCATCGCGGCGGGCAGCGTCGTGAGCAGCGGGGCGCAAGGCGGCGCCACT
CGCAAGCAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7911:591..4299-

>mRNA_E_fasciculatus_S2_contig7911.16078.1 ID=mRNA_E_fasciculatus_S2_contig7911.16078.1|Name=mRNA_E_fasciculatus_S2_contig7911.16078.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1326bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7911:591..4299- (Ectocarpus fasciculatus EfasUO2)
ATGTTCTCTTTCCTAAACCTCCAGAATTTTAACTTCGATTTCGTCGGAGG
AGGAGGAGACTACATCCCCAACAGCGGCGGCGGCGGGCGCACTGGCAAGA
AGAAGACCACCAGCAGCAGCAATGGCAAGAGAGAGTCCGGCAAGCAGCTC
TGGCTCTGGGAGTCGCACGGCTCCTCCTCCTCGCCGACAGCCGACGACAG
CACTGCCAACATGACCCCGAGGACCGAGCCGGTCGTCACCCCGCCCCCGA
AGCGGGCGCCGTTGGATTGTCCCGCGGCTCGCGCGGAGACAACGGAGAGG
GCCAAGCGGCGCTTCTCCTCGCAACAGCAGCAGCAGCAGAGAGCCGTGCG
CAACAACAGAGAACAACGGCGCTCGTCCGTGTTCTTCAAGCTGCCGGACC
TCGACAAGATCCTCAAGGGTGAAGACACCAACAGCAGCTCAGAGGCCGCC
GGCGGCAGCAGGAAGAAGGAAGGGCGGCGCACCAGCAGGAACGCCAACGG
CGGCAAGAGCCACCATCACCAGGGCATCGGCGGCGGCGGCGACTTCGGGC
ACAGCCTCGCGTCCAAGCTCAGCCGGCCCGTTTCGGGCCGCAGGCGCGGC
CGCCGAGCGTCCGTTGCGCCCGGCGGCTCTTCGCCCGGGCGGACGAGAGC
GGATCGCTTAGCGGCGGCTGCAGCGGAAGAAGAAGCAGCAGCAAGGGACG
CCGCGGCGGCGGCGGAGAGGTCAACGTGCGCGTTGGATGAAGAGTCTCGA
GAACAAGGTTCAGCGGCGGCGGCGGCGGGAGAAGGGCCACCGTTGTTCGA
ATCGAAACGCGACACGCTGCTGGTGACCGTTGGGGAGGAGGAGGAGGTGC
TGGTGCTGGCTGCTGGTGCTGCTGCTGGTGCTGCTGCTGCTGCTGCTGCT
GCACCCGACGGTGATGCTGTCCAGCAGCAGCAGCAACAGGATGATCGCCC
GAGGGATCAAAAGCGACCGTCCCCAAGATCTTCGCCGAGAGCTCTCAGCG
CCGGCCACAGGCGCGAGTCGTGCCGCGACGGTCGAGTCATCAGCCGCGCG
CCCAAGGGCCTCTCCGCCGCGCGCCTGCTCGAGGACGCCCAGGACGTGGC
CCGCATCCGCAGCCAGGCCAGCCTCCGCGCCAAGATGGAGGGGGTCTGCT
GGATCGCGAGCAACTGGTGCGTGGGCGGCCGGAAGGGGGTCCTCAGCGGC
AAGAGGTTCCTGGTCCTGTGCGACAACATCGTCTGGGCCGAGCTGCGCGA
GGCCGACCGCCGTTGCAGCATCGCGGCGGGCAGCGTCGTGAGCAGCGGGG
CGCAAGGCGGCGCCACTCGCAAGCAA
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